>input_sequence_66890
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------------------------------------------------------------------ATGCTGACTACCTT
TGATGCGCTTGTCGATGTCCTACATAACATAAGGGAATTGCCTTTCAGCAGAATCGAGTTCATTCCTGATGAGGTCGCTG
ATATACCGGATTTGCCCTGCAGCAGATACGAGTCCATACATAATGTGGTTGCTCATATTTTTTGTAAGATGGTGGTTGAT
TTGAAAGGAATACTTGAGGGGACTACCAATGGCAGGCACATCAGCAGAGAATGTGCTATACATCCAGCAACTGCTCTTCT
TGTACGATACCTGGAATTTTTCTTTCGCAACGGAGAGATGATGCAGTCAGTTCTTGGCACCAGGGATTGCACTATTGAGC
TTAT------CATGATTGGTTCTTGGGTCTCCAAGCTCAGTGAAGATGCAGAGGTAATGTTCCCAGGGAAGGGACAAAGG
TGCATATACATGTTGAATAACATGGATTATGTTTATCAACTGAAGCATCATCCTGGAGGATTCCTTTCAAATATAGAACT
GCAGAGGGGTCTCTGTTCGCTGATCCATCAATACATTAAGGGCTATCTCGAGGAATACTGGTTTCCACTTATGCTGTCAT
ATCTGGATGGTGATTCTCTGAAGAAGCCACGCCGTTCATCCTTGTATAAATTCACAACAGAGTTCTTTAGAATCTGTGAT
GGCCAGATGACATGGAAAGTTCGTACTAAGCTTAAACAGAGACTGCGTGAAGAGATAGTGGAATTGATTGTTCCAAAATA
TGTGAGCTTCTTAGAGGCGCTGCAGGACAATCCAAGTTCTTGGTTGAAGAGGATGTGCCGAGCCAGATCTGAGAAACTGG
TGCGCACTGCTGCGCGACTGGAAGAGGTGATCAGAGAACTCTTTGAAAGCTAG---------------------------
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>chr2A_1_TraesCS2A01G030400
GTTCCCGGTATCGGCATCGCGCGCCGCCTCGCCCCACTCCCGGCTCCCGGCATGCTCAGGGCCGTCCCCGCGCCGAGCCG
TACAAAGGAAGTCCACTTGCAGCTTTCCTATACTTGTGCGCTGCGCTTGGAGTTGCCGTCGCCATTCGGCTGTGCGCAAG
TCCGCCGCCTTCCTACTGCACGTTGCCGCCTTCCTACTGCACGTTACCGCCGCCATTCAACATTCAAGATTGACAACTTG
TATAATATAATAATGAAAAAATAGACTACATATCAGTGGATATAGAATATACGTAATTATCCCTTCTTGGTTGTTGATGA
GTTATCTGTGTGGCTTGCTAGCAAATACTCCCTCTGTAAACTAATATA--------------------------------
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----------------AGAGCGTTTAGATCACTATTTTAGTATTCTAAACACTCTTATATTAGTTTACGGAGGAAGTACT
CTTCAGTGAGTACTGTAGACCTGCTCGCAAAGAAAAAGTACCGTAAACCCGAGATGAGAT--------------------
-------------------------------ATTTCTTTTCTTTAGGGTATAC---------------------------
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-------------------------------------------------TCTGCCACTGAATCCTAGTACTAGTATAGTA
GTATTATGTTTGTCTTTACATTATGACATTATGTGGTTTCTTGTGATTGTATCAAGCAACCTGTAGTAGGACTGGCAGCT
AAGAGCGCCTTTGGTGCTATATA-----------GATATAGACATGATACTTTCTGAAACTGTGTACGTTCTTAGCAGTA
CATTCTGAAGTTTGATCTCGTTCTTAAAACAGATTGTTCGACGTAGTTGAGGAGAACCAATGGATTATCTATTCCGATCC
TCATGCGTTGACAGACAGATCAACTGGGACTTTGGTCATGACGATGAAAATTACTGCAAAACTTGTACATTTGATCTGGT
ACGAATTAGATGTGCAGAATTGGAAGCTATGTCAGGAAGTAAAAAAGGTGTGCTTTCAAGAGGTTGTTGGGCAATCTGTA
GAGAAGCTCCTTGATGTTGCACTTTCTTTCAGCAATGGAAGTTGGTCTGCTGATCATCCTTTGCCAATGCTGACTACCTT
TGATGCGCTTGTCGATGTCCTACATAACATAAGGGAATTGCCTTTCAGCAGAATCGAGTTCATTCCTGATGAGGTCGCTG
ATATACCGGATTTGCCCTGCAGCAGATACGAGTCCATACATAATGTGGTTGCTCATATTTTTTGTAAGATGGTGGTTGAT
TTGAAAGGAATACTTGAGGGGACTACCAATGGCAGGCACATCAGCAGAGAATGTGCTATACATCCAGCAACTGCTCTTCT
TGTACGATACCTGGAATTTTTCTTTCGCAACGGAGAGATGATGCAGTCAGTTCTTGGCACCAGGGATTGCACTATTGAGC
TTAT------CATGATTGGTTCTTGGGTCTCCAAGCTCAGTGAAGATGCAGAGGTAATGTTCCCAGGGAAGGGACAAAGG
TGCATATACATGTTGAATAACATGGATTATGTTTATCAACTGAAGCATCATCCTGGAGGATTCCTTTCAAATATAGAACT
GCAGAGGGGTCTCTGTTCGCTGATCCATCAATACATTAAGGGCTATCTCGAGGAATACTGGTTTCCACTTATGCTGTCAT
ATCTGGATGGTGATTCTCTGAAGAAGCCACGCCGTTCATCCTTGTATAAATTCACAACAGAGTTCTTTAGAATCTGTGAT
GGCCAGATGACATGGAAAGTTCGTACTAAGCTTAAACAGAGACTGCGTGAAGAGATAGTGGAATTGATTGTTCCAAAATA
TGTGAGCTTCTTAGAGGCGCTGCAGGACAATCCAAGTTCTTGGTTGAAGAGGATGTGCCGAGCCAGATCTGAGAAACTGG
TGCGCACTGCTGCGCGACTGGAAGAGGTGATCAGAGAACTCTTTGAAAGCTAGCGTCTAGAG--------AGCTAGAAGG
GCGCCAAACTTGTACAGGATAGGTGCATTTATCATATACTCCGTCTTAGCATTTAGAGAGCATTTGGTCTGGTGACCCGG
CTGTGTTGCCAAATGGTGTGTGTATAGG--TTTTTTTTTTTTTGTGAGGGTGGTGCACACTTTTTTTTTACAAGTACTCC
CTCCGTTCGGAATTACTTGTCTCGGAAATGGATGTATCTAGAACTAAAATACATCTAGATATATCCATTTTCACGACAAG
TAATTCCGAACGGAGGGAGTATGTATCATAATACAGTACCATAGATAATCTCGGGTTTTGTTTATATTCCATATATAGTC
ACAAGGTATGTGTTCACTTCTCAACAATTAACAATGAGGTAATTACACCAGTGGTGCTCGAACTTGCCACCAATGTTTAC
TTTAGTGTCTGAACTTGAAAAATACACCGAACTGGTTCTAAAACTTGACACGAACGTGCAAATACGATGCTAATCTCATC
CGTAGAGGTAAAGTACGTTGACGTGGCATCATCTGTGGTTGACGTTGCATCAACATGGCGTGGGGCACACTTGTAACGAG
GAAATGAGATTAATTTAGAATATGTATGGCTCAATGACTAGTGGATCCCAGCTGCCAGTATTGGAAATTAAAATGAAAAT
TGGTGCCAAAGTACCTAGAACCGGCCACCTGACACCAAACTGCAACTCAACGGACCAACACGCCAACTAAATTCTATAGA
CAAATTGTGTGTCTTCTGATATTTTATGTAGTGTAAATACAAATGCTTACCTAAATACGCCCCAGTTACTGCGCCCATTT
AGCATATCTTGTTTTTTCTTAACAAAGTGCATAAAGTCCGAAAATTACAGTGACAGTAATACAAATAAAATACAACTATT
CATGTGTTATAAGTACTCTACATAAAAATAAAATAACTAACTTCTAAAAATGTTCATATTTTTTCAAAAATATTAATATA
ATTGCAATAATATATATGAATTA
>chr2B_3
--TCCCGGTATCGGCATCGCGCGCCGCCTCGCCACGCTCCCGGGTCCCGGCATGCTCAGGGCCGTCCCCGCGCTGAGCCG
TACAAAGGAAGTCCACTTGCAGCTTTCCTGTACTTGTGTGCGGCGCTTGGAGTTGCCGTCGCCATTCGGCTGTGCGCAAG
TCCGCCGCCTTCGTACAGCACGTTGCGGGCCTACCGAGGCCTCGCCGCCGCGGTCGTCGGCGCTCTCATCATCGTCCTTT
TTCTGAGGCATCCTCCCCGCTGGGCGGATCAGGAATACCCTCATGGACCTAATCAGATCCCGGCGGCTCCGGCTCCGCAG
ATTCAAACGGAGCAGCCACGCCTCGCTCCCACGCTCTCCATCACCATCACTGGGGGCGTACTGGACGCGAGCCAGGTTGC
TGCTGCCATCCGCAGCTCCATGGCAGACAGCACCCGTCCGACTCCCGCCTTCAGTCCACCCCAAGCTGATTCCTCCGATT
CCGACTCCGACGGGTGCGGGTCAAGCACCAACGGCGACGAGACCAATAACTTGTGGTATACTCCCGTCCATCTCCTGAAA
GCAGGGGATGTCTGTCTCATCCTCCCCGTCTTCATCCAGCAGCTCCAAGAGATGGCTCCAGGGTTAACCGAAGCTGAATC
CCTTGAATTGCTGCTGAGAGCGTTCAGAGAAGCCAACAAATCTGAGAGATTCCACAGGTATTAAATCCCCAAGTACTCGT
TGATTTATTTCAGCACAGGTTTGGTTCTTCCATCGGCACGATTTTTGTTCTTCCAAGAGGAAAAAACTCCAACTTCTCTA
CTTTGAGTCCTTGACTTTGCAATACTAGTCGATTTATTTTCTATAGATATACTACTCCCTCCGTCCGAAAATACTTGTCA
TCAAAATGGATAAAAAAGGTTGTATTTAGAACTAAATACATATAGATACATCCGCTTTTGTTCATTTTGATGACAAGTAT
TTCCGGACGGAGGGAGTATTTCGTACAATCTGTTTTAAGGACAAGATCAAACTTCAGAGTAGTTGACTTACTTCGGCAAT
ACTTCCAAGTAAGTGTTAAAACCGGCGGTATTTTTCTCGCTCTAAGCTTTTATGAATCATGTTTACTTTACACCTTGGAT
GGACATTATGACATTATGTGGGCAGGTTTACTCTGCTGGTATGAGAACATCTGCCACGGAATCCTAGTACTAG-------
----TATGTTTGTCTTTACATTATGACATTGTGTGGTTTCTTGTGATTGTATCATGCAACCTGTAGTAGGACTGGCAGAT
AAGAGCGCCTTTGGTGCTATATAATTGATATATGGATATAGACTTGATACATTCTGAAACTGTGTACGTTCTTAGCAGTA
CATTCTGAAGTTTGATCTTGTTCCTAAAACAGATTGTCCGACGTTGTTGAGGAGAACCAACAGATTATCTATTCGGATCC
TCATGCGTTGACAGACAAATCGACAGGGGCTTTGATCATGACGATGAAAATTACTGCAAAACTTGTACATTTGATCTGGT
ACGAATTAGATGTGCAGAATTGGAAGCTATGTCAGGAAGTCAAAAAGGTATGCTTTCAAGAGGTTGTTGGGCAATCTGTA
GAGAAGCTCCTTGATGTTGCACTTTCTTTCAGCAATGAAAGTTGGTCTGCTGATCATCCTTTGCCAATGCTGACTACCTT
TGATGCGCTTGTCGATGTCCAACATAACATAAGGGAATTGCCTTTCAGCAGAATCGAGTATATTCCTGATGAGGTCGCTG
ATATACCGGACTTGCCCTGCAGCAGATATGAGTCCATACATAATGTGGTTGCTCATATTTTTTGTAAGATGGTGGTTGAT
TTGAAAGGAATACTTGAGGGGACTATCAATGACATGCATATCAGCAGAGAACGTGCTATACATCCAGTAACTGCTCTTCT
TGTACGATACCTGGAATTTTTCTATCGTAACGGAGAGATGATGCAGTCAGTTCTTGGCACCGGGGATTGCACTATTGAGC
TTAT------CATGATTGGCTCTTGGGTCTCCAAGCTCACTGAAGATGCAGAGGTAATGTTCCCAGGGAAGGGACAAAGG
TGCATATACATGTTGAATAACATGGATTATGTTTATCAACTGAAGCATCATCCTGGAGGATTCCTTTCAAATATAGAACT
GCAAAGGGGTCTCTGTTCGCTGATCCATCAATACATTAAGGCCTACCTCGAGGAATACTGGTTTCCACTTATGCTGTCAT
ATCTGGATGGTGATTCTCTGAAGAAGCCACGCCGTTCATCCTTGTATAAATTCACTGAAGAGTTCTTTAGAATCTGTGAT
GGCCAGATGACATGGAAAGTTCGCACTAAGCTTAAACAGAGACTGCGTGAACAGATAGTGGAATTGATTGTTCCAAAATA
TGTGAACTTCTTAGAGGCGCTGCAGGACAATCCAAGTTCTTGGTTGAAGAGGATGTGCCGAGCCAGATCTGAGAAACTGG
TCTGCACTGCTGCGCGACTGGAAGAGGTGATCAGAGGGCTCTTTGAAAGATAGCATCTAGAGAGCTAGTCAGCTAGAAGG
GCGCTAAACTTGTACAGGATCGGTGCATTTATCATATACTCCGTCTTAGCATTTAGAGAGCATTTGGTCTGGTGACCCGG
CTGTGTTGCCAAATGGTGTGGTGTATAGTTTTTTTTTTTTTGGGTGAGGGTGG---------------------------
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>chr2A_1114
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-------------------CAGCAGTACTGAGTTGATACATGATGTGGTTGCTCATGTCTTTCGCAAGATGGTGGTTGAT
TTGAGAGGAATGCTTGAAGGGACTACCAGTGACATGCATCGCATCAGAGAATGTGCCATCCATCCAGCAACCGTTCTTCT
TGTACGATACCTGGAATTTTTCTATCGCAGCGGGGACATGATGCAGTTTGTACTTGTCACTGGGGATTGGACTATTGAGC
TTAG------CATGATCTATGCTTGGGCCTCCAAGCTCAGTGAAGATGCAAAAGTAATGTTCCCAGCAAAGGGTCAAAGG
TACATATACATCTTGAATAATATGGATTTTGTTTATCAACTGAAGTATCATCCGGGAGGATGCCTTTCCAGTGTAGAACT
GCAGAGGGGTCTCTGTTCGCTGATCCATCAGCACATACAGAGCTACCTTGACGAATGTTGGGTCCCGCTTGTGGG---AT
ATTTGGGTGTTGATTCTCTGAAGAGATTTCTTG------------------------CAGAGTTCTTTACCATCTGTGAT
AGCCAGATGACATGGAAAGTTCGTACTGTGCTCAAGGTGACACTGCGTCGGGAGATTGTGGGGTTGATTGTTCCAAATTA
TGAGAACTTCTTACAGG---------------------------------------------------------------
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>chr2B_1159
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----------------------------------------------------------------TAAGATGGTGAATTCT
TTCAAAGGCGTAATTCAGAGGACTTCAAATGACATCCGTAGCAGCAAGGAATCTATTATTCATCCAGCAACTTTTATTCT
CATACAAGTCCTGGAATTTTTTGGTCGTAACAGAGAGATGGTCCAGTCAATACTTGAATCTGGAGATTACAACACTGGCC
CATGCTCTGACATGTTTGATTGTTTGGTATCTAAGCTCAAGGAATGTGCAGAAGTAATTTTCCAAGAAAAGGGACAAAGG
TGCATATTCTTCTTGAATAACACAAATTATGTTTTGCAAAAGAATTGCCACTCAGGATTACTCCCTCCCAGTGTAGC---
---GAGTAATCTAGTATCACTGATGGACCAGCACATCGTGAGCTACCTTGAGGAATATTGGTTTCCACTTGTGAG---GT
ATTTGGATGGTGATTCTCTGAAGAAGCCACGCGGTTCTTCCTTGGATAAATTTACCAAAGAGTTCTTTACCATCTGTGAT
AGCCAGATGACTTGGAAAGTTCAAACTAGCCTCAAGGAAAGACTGCGTGAACGGATAGTGGATTTGATTGTTCCAAAATA
TGTAAACTTCTTGAAGGCTCTGCAGGAAAATCCAAGTTCTTGGTTGAAGAGGGTGTGCCGAGCCAGGTCTGAGAAGCCGA
TTTATCCTGCTCCACAACTGGAAAAGGTGATCAGGGGACTCTTTGAAAGATAGCATCTAG-----------------AGG
GCACGAAACTCGTACAGGGTCGGTGCATTTATCATATT-------TTAGCATTTGGAGATCATTTTGTCTGGTG------
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>SNPs
SS-------------------------------S-S-------S-----------------------------S------
-----------------------------S--------S--S--------------------------------------
------------S---S---------S-S-S-S-SSSS--SSSSSSS-SS--SSSS--SS-SS--SSSSSSSSSSS---S
-SSSSSSSS--SS-SSSSSSSSS-SSS-SSSSSS-SSSSS-SSS-S-SS--SSS-SS-SS-SSSSSS-SSSSS-SSSSSS
S--SSSSSS-S-SSSSSSSSS-SSSSS-S-S-S--S-SS-SS-SS--S--------------------------------
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------------------------S---SS-SSSSSSS-S-S-SSS-S-SS-SSSSSSSS-SSSS-S-SS-S-S-S-SS-
SSSSSSSSSSS-SSSS--SSS--S-SSSSSSSSSSSSSSSSSS-SSSSS-SSSSSSSSSS--------------------
-----------------------------------S------S---SSSSSSS---------------------------
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---------------------------------------------------------S---------------SSSSSSS
SSSS--------------------------S-----------------------S-----------------------S-
-------------------------------------------S------S-----------------------------
------------------S----S-------------S------S---------------SS------------S-----
-----------------S---S--S---S-----S---------------------------------------------
----------------------------------------S--------S------------------------------
-------------------------------------S------------------------------------------
--------------------S--------------------------------------SS-------------------
----------S-----------------S---------------------------------------------------
-------------------------------S--S---S-----------------------------------------
-----------------------S-------------------------------------S------------------
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---------------------------------------------S----------------------------------
-------------------------------------------------------S------------------------
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-----S--------------------------------------------------------------------------
-SS---------------------------------S------------S----S-------------------------
----S---------------S-----------------------------------------------------------
--------------------SSSSSSS--------------SS----------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_206
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--------------------------CGCCTTCCTACTGCACGTTA----------------------------------
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>reverse_2805
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----TCCGAACGGAGGGAGTATGT--------------------------------------------------------
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