>input_sequence_66879
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------------------------------------------ACTTTTGCTGGCCGGCCGGAGCCACACGACCACAAGGA
AGGAGCTAAGCTAGCACCGACAAACAGCCCTTGCT------------GCCGTCCCGATGGCAAGCACCAACATGGCGTCG
GCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCACCAACGGCGGCGTGAGCAGCCGCGTCAGCTTCGTCCC
CTCCAACCGACTGGGCTTGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCCACTGCCGCCGCGCCGGCGGAACCAGCACCGG
CCGCGGAGGAGAAACCGGACGCCGCCGTGGCCACCAAGGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGACCCAAGAGG
GGAACCAAGGTACGTCAGTACACTCCATTGTTAGCATCTCTGTGAAGCGGCTGGGGCAATCGTGGCTCAACTCTTGCCTG
AAATGAAATATGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCACGGTTGAT
CAGGTAACCAACGGGCTTGTCCCCTCCAATCTTCACTTCTTGCAAA-TGCAATGGAATGCTTCTGTTAGTGTAGTGAACT
CGATCACCAAATACTGATGGATGGCGCGT--GTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCGCCAAGGTG
AACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAACGATCGAAGCTGCCG-
--CGTGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCAAGTGACGATGTGAATGTTAGCCTCTCACAAACCTTATGTG
TAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGG--------------------------------------
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>chr5A_1_TraesCS5A01G482800
GTCAGCGACTGGATGGAGCGGGAGAGAAGGACGGGGAGCGGTTGGAGAAGGAACCGCCACAATGCACTAGAAGGAGGTGC
GCCGTCTTGCCCATGCCAGTGGGCGCGCTCTTGGGGAAGGTTGCTAGCTCACGTGTGTGAGCTCAGCCGCAGACCGCGGC
ACCCACGCACATTATGTGTCTAGCGAGGATCGCGCCATTGCGTAGAACAAGGCTACGACGGGCGCGTCGTCGTGGGCGTG
GGCTTGGCGCCGGTGGAAGACAAGATAGGTCGGGAGCATGCGGCCGTGCACGAAGAGGATGATTGCCGGCGACATTTTAG
AGATAGAGAGAGGAGAAGTAGGGGAAAAGACTAGTCAAAGTGTCCATGTGGCTGGATGCAAAAAAAATGTCCATGTGGGC
TTTTTTGCAAAACCAGCTCCTGACGAGCGGGATCCACCGCTAGGAAGTGTGTGCTGAAAACGCTCTAATCCGCCGATTAC
TTGTTTACGCAGATGATTATATGGGTCCTGATGTGGCAGTAATAGCATAATGCATTCAGCCCGCTATGGATTTCGCTAGT
TTTGACTACGGTTATTGTTGCAGAGAAGCTAATGTGGTTGTTGCTGATAGCTTAGCTAAATTTTCTTGTGTTTCTAACTC
GTCTGAACTCTGTGACTTTACTATCCTCGACTTATTCTTCCCCATATTGTAAACGATATGTCAATTGTTTAAGGAATAAA
ATGTATGATGTTCACAAAAAGAAAGAAAACTCGACGGTGACCAACGATAGCCGAAATGAACCAAGATTGCAATCTGTGTA
TGTGGGCGAGCAAGCGAGTGCATCGCATGGATGGGAGGTTATCCACATGGGAGGATAAGATATGCCATGCGGCGGCACCG
CAGTGGCCGGCACAAATCACCCACTTGGCTGGAGATAGATGATCCGC--CTATCTCCGCTCGCCATCCCGACCAGGGCCG
GTTGCACCTTATTTCGCCTTACACCTCGCCATCGACTCACATACTTTTGCTGGCCGGCCGGAGCCACACGACCACAAGGA
AGGAGCTAAGCTAGCACCGACAAACAGCCCTTGCT------------GCCGTCCCGATGGCAAGCACCAACATGGCGTCG
GCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCACCAACGGCGGCGTGAGCAGCCGCGTCAGCTTCGTCCC
CTCCAACCGACTGGGCTTGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCCACTGCCGCCGCGCCGGCGGAACCAGCACCGG
CCGCGGAGGAGAAACCGGACGCCGCCGTGGCCACCAAGGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGACCCAAGAGG
GGAACCAAGGTACGTCAGTACACTCCATTGTTAGCATCTCTGTGAAGCGGCTGGGGCAATCGTGGCTCAACTCTTGCCTG
AAATGAAATATGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCACGGTTGAT
CAGGTAACCAACGGGCTTGTCCCCTCCAATCTTCACTTCTTGCAAA-TGCAATGGAATGCTTCTGTTAGTGTAGTGAACT
CGATCACCAAATACTGATGGATGGCGCGT--GTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCGCCAAGGTG
AACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAACGATCGAAGCTGCCG-
--CGTGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCAAGTGACGATGTGAATGTTAGCCTCTCACAAACCTTATGTG
TAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAATAATCTCCTCCTGTTGCTTAAGATGATTGCAT
TCTTGCTCACTTTTGTACAAAAGATCGGTTGTTCATGTTACCGGAAGGCTACACAGAGCAATACAGCATGCACAG---AA
CAACAAGGTTCACAAAGACATATCCAGTCGATTATTGATTTCTTTTTAGTCAAGATTGGACATTATTGATCAAATCGGTT
ACATCTCTAACGGATCCCCTACGATCCTTTAGTGGAGGTGCAATCCTTTAGTGGACGACAA-------------------
-------------------------ATTATCCTCCTCGGCCTGAAAACTTCGGCCAAGTATCTCAAATATACTCGACCGA
GGCCGGGCGGAGTAAAATTTTCTTTTACCCTTTCTCCCGCCCGAGCGGCTATCCTGTCGTCGTTTC---CCCCTACTCGC
CGCAGCACCCACCAATGCCCTCGATTCCGGATGGGATGGAGAGGCAAGATCCTTCCGCCACCGCCACCGGGGCTTCACTG
CCGAAAACGACCCCGCGCCGCCGCCCGCACCAAAAAAGAGGTTGGGCACCAAAACCTCCTCAGGGCCACCTCACCGGCAA
CCACCGCCGGTAGCAAGGTCGGTGGCAAGGCTGTTGCATCTTCGACG---GTTCACCGCCCTCCTACTGCTCTAGCCATC
GGTAAGCGGGCAAGGAAGTAGACAACCGCTATGTCTCCGGTGACGGCAGGCCGCCCTCCCACTGCTCCAGCCGCGGCAAG
AGGGCAAGGAAGCAGACGACAA-TGTGTCGGCACTCGTCGATGACGTGGCGAAGAAGAAGAACAAGAAGGTGCCTTCGG-
-TGCCTCGCCCTCGTCCGGTGCCATGGACCCCGTCTCAGGCCACCGCTACGGCTACTCCTCCTATGCGTCCGACCGCCGT
TGCCGGCAACAAGGATTGTGGCTGCCAAGTGGTCGATGAAATGCCATCAAGGTAATAAAATGTCTTTTCATTTCGGCTAA
TGCATTGTCTGGTGGTGG-----TGTTGTCATAGTGCGGAGATGAACGCAACTAAATTCTTTT
>chr5B_748
AACTCGCAGTA---------------------------------------------------------------------
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---------------------------------------ACCAACGATAGCCGAAATAAACCAAGATTGCAATCTGTGTA
TGTGGGCGAGCAAGCAAGTCCATCGCATGGATGGGAGGTTATCCACATGGGAGGATAAGATACGCCATGTGGCGTCACCG
CAGTGGCCGGCACAAATCACCCACTTGGCTGGAGATAGATAATCCGC--CTATCTCCGCTCGCCATCCCGGCCAAGGCCG
TTTGCACCTTATTTCGCCTTACACCTCACCATCGACTTACATACTTCTGTT----GGCCGGAGCCACACGAGCTAGC---
------------ACCACCGACAAACAATACCTTGCTGTTCTGAGCTCGCCGTCCCGATGGCAAGCACCAACATGGCGTCG
GCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCTCCAACGGCGGCGTGGGCAGCCGCGTCAGCTTCGTCCC
GTCCAACCGGCTCGGCTGGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCGACTGCCGCCGCACCGGCGGAACCAGCACCGG
CCGCGGAGGAGAAACCGGAAGCCGCCGTGGCCACCAAAGAGCCCGCCAAAGCCAAGCCGCCGCCAAGGGGACCCAAGAGG
GGAACCAAGGTCAGTGCAAATTTCTCTGCAATCTAATAGCATGAGTAACCATTT-------GTGGCTCAACTTTTGCCTG
AAATGAAC--TGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCACGGTTGAT
CAGGTAACCAACGGCTTTGTCCCCTTCAATCTTCACTTATTGCAAATTGCAATGGAATGCTTCTGTTAGTG-----AATT
CGATTACCAAACAATGATGAATGGCGCGTGT--AGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCGCCAAGGTG
AACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAGCGAACGAGGCT-AGCT
GCCATGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCGAGTGACGATGTGAATGTTAGCCTCTCACAAACCTTATGTG
TAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAATAATCTCCTTCTGTTGCTTAAAATGATTGTAT
TCTTGCTCACTTTTGTACAAAAGATCGGTTGTTCATGTTACCGGAAGGCTACACAGAGCAATACAGCATGGACAG---AA
CAA---GGTTCACAAAGACATATCCAGTCGATTACTGATTTCTTTTTAGTCACGATTGGACATTATTGATCAAATCGATT
ACATCTCTAACCCACCCCCTACGATCCTTTAGTGGAGGTGCAATCCTTTAGTGGAGGATAATAGGCGGCTAACCACACCT
AGCCAAACTCGCAAAGCGTTAGTGGATTATCCTCCTTGGCCTGAAAACTTCGGCCAAGTATCTCAAATATACTCGGCCGA
GGCCACGGGGAGTAAACTTTTCTTTCCCCCTTTCTCCCGCCTAAGCGGCTATCCCTTCCCGTCACGTCACCCCTACTCGC
CGCAGACACCACCAATGTCCCTGATTATGGATGGGATGGAGAGGCAAGACCCTTCCGCCACCACCACCGGCGCTTCACTG
CGAAAACAACCCCAGCGCCGCCGCCCGCACCAAAAAAGAGGTTGGGCACCAAAACCTCCTCAGGGTCACCTTACCGGCAA
CCACCGCTGGTAGCAAGGTCGATGGCAAGGTTGTTGCATCTTCGACGACGGTTGACCGCCCTCATACTGCTCCAGCCATC
GGCAAGCGGGCAAGGAAGCAGACAACGGCTACATCTCCGGTGACGGCAGGCCGCCCTCCCGCTGCTCCAGCTACGGCAAG
AGGGCAAAGAAGTAGACAACAACTGTGTTGGCGCTCGTTGATGACGTGGCGAAGAAGAACAACAAGAAGGTATCTTCGAT
ATGCCTCGTCCTCGTCTGGTGCCATGGACCCCGTCTCTGGCCACCGCTACAGCTACTCCTCCTATGCGTCCGGCCTCCGC
CGCCGGCAACAAGGATTGTGGCTGCCAAGTGGTCAATGAAATACCATCAAGGTAATAAAATTTCTTTTCATTTTGGCTAG
TGCATTGTCAGGTG-------------------------------------------------
>chr5D_749
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----------------------------ACTCGGCGGTGACCAACGATAGCCGAAATAAACCAAGATTGCAATCTGTGTA
TGTGGGCGAGCAAGCAAGTCCATCGCATGGATGGGAGGTTATCCACATGGGAGGATAAGATACGCCATGTGGCGGCACCG
CAGTGGCCGGCACAAATCACCCACTTGGCTGGAGATAGATGATCCGCGCCTATCTCCGCTCGCCATCCCGACCAAGGCCG
TTTGCACCTTATTTCGCCTTACACCTCACCGTCGACTTACATACTTTTGCT----GGCCGGAGCCACACGACCACAAGGA
AGGAGCTAAGCTAGCACCGACAAACAACACTTGCT------------GCCGTCCCGATGGCAAGCACCAACATGGCGTCG
GCCACCTCCAGATTCATGCTGGCGGCGGGCATCCCCAGCGGCACCAACGGCGGCGTGAGCAGCCGCGTCAGCTTCGTCCC
CTCCAACCGGCTGGGCTTGAAGCTCGTGGCCCGCGCCGAGGAGGAGCCGACTGCCGCCGCGCCGGCGGAGCCAGCACCGG
CCGCGGAGGAGAAACCGGAAGGCGCCGTGGCCACCAAAGAGCCCGCCAAAGCCAAGCCGCCGCCGAGGGGACCCAAGAGG
GGCACCAAGGTACGTCAGTACACTCCTTTGCTAGCATCGTTGTGAA--------GGCAATCGTGGCTCAACTCTTGCCTG
AAATGAAA--TGATCAGGTGAAGATTCTGAGGAGGGAGTCCTACTGGTACAACGGGACCGGATCCGTCGTCACGGTTGAT
CAGGTAACCAA-----------------ATCTTCACTTC-------TTGCAATGGAATGCTTCTGTTAGTGG-----ATT
CGATTGCCAAATAATGATGAATGGCGCGTGTGTAGGATCCCAACACCCGTTACCCGGTGGTGGTGCGTTTCGCCAAGGTG
AACTACGCCGGCGTGTCGACCAACAACTACGCCCTGGACGAGATCAAGGAGGTTGCTGCTTAAGCGAACGAGGCTAAGCT
GCCGTGTGCTCCATCCAATGTTTGTATCAGTAGCTCGTCAAGTGACGATGTGAATGTTAGCCTCTCACAAACCTTATGTG
TAATACCTCTGCGATTATATGTATTTGCCTGCTTCCTCATGGACCTAATAATCTCCTCCCGTTGCTTAAAATGATTGTAT
TCTTGCTCACTTTTGTACAAAAGATCGGTTGTTCATGTTGCCGGAAGGCTACACAGAGCAATACAGCATGGACAGCACAA
CAA---GGTTCACAAAGACATATCCAGTCGATTACTGATTTCCTTTTAGTCAAGATTGGACATTATTGATCAAATCGATT
ACATCTCTAACCCACCCCCTACGATCCTTTAGTGGAGG-------------------ATTATAGGCGGCTAACCACACCT
AGCCGAACTCGCAAAGCGTTAGTGGATTATCCTCCTTGGCCCGAAAACTTCCACCAAGTATCTCAAATATACTCGGCCGA
GGCCACGCGGAGTAAAATTTTCTTTCCCCCCTTCTCCCGCCTGAGCAGCTATCCCTTCCCTTCCCGTCACCCCTACTCGC
CGCAGACACCACCAATGCCCCCGATTCCGGATGGGATGGAGAGGCAAGACCCTTCCGCCACCGCCACCGGCGCTTCACTG
CCGAAAACGACCCCGCGCCGCCGCCCGCACCAAAAAAGAGGTTGGGCACCAAAACCTCCTCAGGGCCACCTCACCGGCAA
CCACCGCCGGTAGCAAGGTCGGTGGCAAGGCTGTTGCATCTCCGGCGACAGTTGACCGCCCTCCTACTGCTCCAGCCATC
GGCAAGCGAGCAAGGAAGTAGACAACTGCTACGTCTACGGTGACGGTAGGCCGCCCTCCCGCTGCTCCAGCCGCGGCAAG
AGGGCAAGGAAGCAGACGACAACTGTGTCGGCGCTCGCCGATGACGTGGCGAAGAACAAGAAGGTGT------CTTCGG-
-TGCCTCGTCCTCGTCCGGTGCCATGGACCCCGTCTACGGACACCGCTACGGCTACTCCTCCTACGCGTCCGGCCGCCAC
TGTCGGCAACAAGGATTGTGGCTGCCAGGTGGTCGATGAAATGCCATCAAGGTAATAAAATGTCTTTTCATTTCGGCCAG
TGCATTGTCTGGTGATTGCTTGTTGTTGTCGTAGTGTGGAGATGAACACAACTAAATTCTT--
>SNPs
SS-SSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S-----------------------S----------------------
---------------S---S------------------------------------------S------S----------
--------------------------------------------------------------------------S-----
S--------------------------S---------S-------------SSSS-------------------------
--------------------------S-S---------------------------------------------------
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---------S--------------------------------------S-------------------------------
-------------------S-----------------S------------------------------------------
--------------------------S---S-------S-------SSSSS-SS--------------------------
--------SS----------------------------------------------------------------------
--------------SS---------S---------------------------------------------SSSSS--S-
----S--------S-----S------------------------------------------------------------
---------------------------------------------------------------S---S---S---SSSS-
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---------------------------------------------------------------------S-------S--
----------------------------------------------------------------------S---------
---SSS----------------------------S------------------------------------------S--
-----------SS-S----------------------------------------S--S---------------------
------------------------------------S--------------------------------------S----
----SS-------------------SS--------------S------------SS--SSSSSSSS--------------
-----SSS------------S----------------------------S--------------------S---------
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-----------------------------------------------------S------------------S-------
--S-----------------------S----S----------------------------S-------------------
--------------------------------S--------------------------------------SS-------
--------S----------------------------S----------------------------------S------S
-------------------------------------------------------------------------------S
--------------S-S-------------S-----S----------S-------------SS
>forward_378
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--------------------------------------AGTGTCCATGTGGCTGGATG----------------------
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>reverse_2296
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-------------------------------------------------------GTCGTCGTTTCCCCCTACTC-----
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