>input_sequence_66870
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------------------ATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAAC
TTTGATAACTGAATCGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGTTTGCCATGCTACGTAGTGCTTTTTTTTGT
TGGTCAACTGATAGTAAGGCCCAATTAAAGGAAGCCGTTTATCGAGTTATATGTTAGTAAATCGAGCTCTTTGGTTATGC
TTCCCTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAA
GAGCTGGGAGAAGAAAGTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCTTACAACCCAACTCATACTCTGGAC
ACAAGGATACATAGGTGCATGTGACTTTCCAATTTGGAATTCGTGCACTTGTTTTGATTAACCATGCTGACATTTTTCAA
CTGCACAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTCTCT
TTGAAGCATTCCGATCTTGTTTTCGTGTCTGTGGACGTAGACGAACTACCGGTACACAAATGTTCCACCGGCTCATTACT
AATTCAGCTTTGAGCGAATGCTCAAACTAAATGTCATTTCGATATATGTTTTTTTTTTGTCAGGAACTGGTCACGGAATT
CGAGGTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAAGAAGGAGATCGACAAGATGGTGGGGGGGAACCAGGCCG
ATCTTCAGCAGAAGTTCGAACCATACTGCCGGCCAGGTGACGAAGTTATGAGTAAACAGTCTTTCGAGGACAAAACCTGA
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>chr1D_1_TraesCS1D01G301200
TAACGGCAAGGGCCGTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGG
ACGACGGCCGGCAGGCGTCCAACGCGGGGAAATCTGAATCTTCCGTTGGATCCCCCATCATCATCAGGAGGAGGAACATA
GGCTTCTTGGTCCTGCGCAAGGTATGC--------ATGTATATGTGC----------ATTTCGTTCTGCTCTCAACAATG
TAATAGAGTAATAACCAGGCTGCATGCATGGCTGCCGAAAGCTATTTGCCGGTTCCATATCATGGCATTTCCTA--AATC
TACAATATACATCTAAGCGATGTGGTAATCGTATG-TTT-------------------------------TTTCCTTGGC
GTTCAAACCGTCATATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGCATCTCCTTTGGGCAAAAAAAATCGACACCC
TAGGATCGTCTGAAACTGTTGCGTGCGGATTCAGGCAAATATGTTGAGCAAGATTCGCCATCGTGCAGACAAACTTCTTG
GTTCTATTGGATTTGCCGTGGCTGTGACTTGGG--CATCAAATCTGTTTCAATTTTTCTATCTAAAACAAACAGCACGTT
TTTGGCTGGTCTGTTCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTTGAAGAATTGAAGTGCTATTCACCATTTGT
ATGTACACCCTCTGTTCCTAAATATAGGAAGTTTTAGCACTTCAATTTAAACTGTCAAAACATCTTATATTTAAGAACAG
AGGTACTCCCTTAGTGATCTAAACTCTCTTATATTTCTTTAGAGTT-AGAGGGAGTAGTACATATTTATATTCACCATTT
CGCCATCTAGAGCTAGCTATGTTAATCATATTTGATGTA-TTGGTATCATGTTATGGCATAGCGTATTGCTTTTATCCAG
TCAAATAGTGAAATCAGCACTGAAAATATAT--CTCTTTTTCCTCCTCGTCTACCAGAGTCCAGGAGTCCGGACATCCTG
ACGGATTTGCTCGAACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAAC
TTTGATAACTGAATCGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGTTTGCCATGCTACGTAGTGCTTTTTTTTGT
TGGTCAACTGATAGTAAGGCCCAATTAAAGGAAGCCGTTTATCGAGTTATATGTTAGTAAATCGAGCTCTTTGGTTATGC
TTCCCTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAA
GAGCTGGGAGAAGAAAGTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCTTACAACCCAACTCATACTCTGGAC
ACAAGGATACATAGGTGCATGTGACTTTCCAATTTGGAATTCGTGCACTTGTTTTGATTAACCATGCTGACATTTTTCAA
CTGCACAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTCTCT
TTGAAGCATTCCGATCTTGTTTTCGTGTCTGTGGACGTAGACGAACTACCGGTACACAAATGTTCCACCGGCTCATTACT
AATTCAGCTTTGAGCGAATGCTCAAACTAAATGTCATTTCGATATATGTTTTTTTTTTGTCAGGAACTGGTCACGGAATT
CGAGGTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAAGAAGGAGATCGACAAGATGGTGGGGGGGAACCAGGCCG
ATCTTCAGCAGAAGTTCGAACCATACTGCCGGCCAGGTGACGAAGTTATGAGTAAACAGTCTTTCGAGGACAAAACCTGA
TGTTCCTGCCCGCCAGTCAATAGAGCTTCAGAACGAGCACGGCCTCCATTGGCTGGGAGCATCAGCAAGAGCCTGCTCGG
CGGCATACGTAGGTTCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGTGTCCACACTCGATCAGCAGTAAATTAA
GTTAGCCCAGCATCTGTAACTCTGCACCACACACGCTGTCCATATGAACTCGCACG-AAACAATGTACTGATTGATTGAC
ACCAGCCAGATGCCTTGAGATCTCATG-AATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCA
CTCATGTCAGGATTCAGGGCAGAATTTATGGGATGGACATCTATATGGATACTATATGCAGGGGTTTGATCGCTTGTTCT
ATGTAGCCAGACATATCAATTACTATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCTCCGCCAAGCAGG
AAATAGGGGTGCCGGAGCGCGGCGGCGGCGGAGAGCCGCCCCTTCTCCCGCTGCGCGATGAGCTTGGTGGCCAGGTCCCA
GCCTCTGCCGGAGTCGAGGTCCAGGATCTGCAGGTCGGGTCTCCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGC
CGGCGGCCTTGAGCTCGGAGTTGAAGTTCTTGAGGCCCGAGGGCGACCTGAGCGCCGGCGTGGCCATCTGCATGAGCACG
ATCCCGGCTGAGTACATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTC
GGCGGGCGGCGTGGGGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGG
GCACGTAGTTCTTGCCAATGCGCAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACCACG
AGGTTGGAGGGCTTGATGTCGCGGTGGACGATGCCGGTGTCG
>chr1B_1
TAACGGCAAGGGCCGTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGG
ACGACGGCCGGCAGGCGTCCAACGCGGGGAAATCTGAATCTTCTGTTGGATCCCCCATCATCATCAGGAGGA---ACATA
GGCTTCCTGGTCCTGCACAAGGTATGT--------ATCTATGTGCATCTTCTTTCCAATTTCTTTCTGCTCTCAACAATG
TAA-----------CCAGGCTGCA----------------------TGCCGGCTCCATATCATAGCATTCAG-A--AATT
TACGATATACATCTAAGCAATGTGGTAATCGTATGCTTTTTTCTAGGATTATTAGGTCAAGAAAAGTTCATTTCCTTGGC
GTTCAAACGGTCATATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGCATCTCCTTTGGACAAAAAAAATTGACACCC
TAGGATCGTCTGAAACTGTTGCATGCGGATTCAGGCAAATATGTTGAGCAAGATTCGCTATCGTGCAGACAAACCTCTCG
GCTCTATTGGATTTGCCGTGGTTGTGACTTGCGGACATCAAATCTCTTTCAA--TTTCTATCTAAAACAAACAGCACGTT
TTTGTCTGGTCTCTTCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTTGAAGAATTGAAGTGCTATTCACCATTTGT
ATGTACACCCTCTGTTCCTAAATATAGGAAGTTTTGGCACTTAAATTTAAACTGTCAAAACATCTTATATTTAAGAACAG
AGGTACTCCCTTAGTGATCTAAACTCTCTTATACTGTATTTCTTTACAGAGGGAGTAGTACATATTTATATTCACCATTT
CGCCATCTAGAGCTAGCTATGTTAATCATATTTGATATA-TTGGTATCATGCTATGGCATAGCGTATTGCTTTTATTCAG
TCAAATAGTGAAATCAGCACTGAAAATATATACCTCTTTTTCCTCCTCGTCTACCAGAGTCCAGGAATCCGGACATCCTG
ACGGATTTGCTCGAACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATCCATCTCATTTACAACTGGCAAC
TTTGATAACTGAATCGTGCACTAGCATCTTTATTGCATAGCTTGTGTTTGCTTGCCATGCTACGTAGTGCTTTTTTTTGC
TGGTCAACTGATTGTAAGGCCC----AAAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGCTCTTTGGTTATGC
TTCCCTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGATTACAGCTCTGGGAATGTGACTCTTATAACCGATCTAAA
GAGTTGGGAGAAGAAAGTGGAAGATGCAGCTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGAC
ACAAGGATATATGGGTGCATGTGGCTTTCCAATTTGGAATTCCTGCAGCTGTTTTCATTAACCATGCCAACATTTTTCAA
CTGCGCAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTACGTACGCCGAACTTTCT
TTGAAGCATTCCGATCTTGTTTTCGTGTCTGTGGACGTGGACGAACTACCGGTACACAAATGTTCCGCCGATCCATTACT
AATTTAGCTTTGAGCGAATGCTCAAACTAAATGTCATTTCGATACATG---TTTTTTTGTCAGGAACTGGTCACGCAATT
CGACGTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAAGGAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGCCG
ATCTTCAGCAGAAGTTCGAACCATACTGCCGGCCAGGTGACGACGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGA
TGTTCCTGCCTGGCAGTCAATAGAGCTTCAGTATGAGCACGGCCTCCATTGTCTGGGAGCATCAGCAAGAGCCTGCTCGG
CGGCATACGTAGGTTCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGCGTCCACACTCGATCAGCAGTAAATTAA
GTTAGCCCAGCATCTGTAACTTTGCACCACACACGCTGTCCATATGAACTCGCACAAAAACAATGTACTGATTGATTGAC
ACCAGCCAGATGCCTTGAGATCTCATG-AATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCA
CTCATGTCAGGACTCAGGACAGAATTTATGGGATGGAGATCTATATAGAAACTATATGCAGGGGTTTGATCGCTCGTTCA
AAGAAGACAGACATATCAAT---TATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCTCCACCGAGCAGG
AAATAGGGGTGCCGGAGCGCGGCGGCGGCGGAGAGCCGTCCCTTCTCCCGCTGCGAGATGAGCTTGGTGGCCAGGTCCCA
GCCTCTGCCGGAGTCGAGGTCCAGGATCTGCAGGTCGGGTCTGCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGC
CGGCGGCCTTGAGCTCGGAGTTGAAGTTCTTGAGGCCCGAGGGGGACCTGAGCGCCGGCGTGGCCATCTGCATGAGCACG
ATCCCGGCCGAGTACATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTC
GGCGGGCGGCGTGGGGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGG
GCACGTAGTTCTTGCCGATGCGGAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACCACG
AGGTTGGAGGGCTTGATGTCGCGGTGGACGATGCCGGTGTCG
>chr1A_1
TAACGGCAAGGGCCGTTCCGCCCCGGCGCCACCCGCCTCTCTCCGAGCCCCCGCCGCCCGCCGGGGTGGGCTTGCCGTGG
ACGACGGCCGGCAGGCATCCAACGCGGGGAAATCTCAATCTTCGGTTGGATCCCCCATCGTCAGGAGGCGGA---ACGTA
GGCTTCTTGGTCCTGC-CAAGGTATGCATGGATTGATGGATATGTGC----------ATTTCATTCTGCTCTCAGCAATG
TA-----GTAATAAGCAGGCTGCATGCATGGCTGCCGAAAGCTATTTGCCGGTTCCATATCATGGCATTTCTTTTTAATC
TACAATATACATCTAAGCAATGTGGTAACCGTATG-TTTTTTCTAGGATTAGTAGGTCAACAAAAGTTCATTTCTTTGGC
GTTCAAACGGTCATATTGTTGTTGGAGGTCTCCTCCAATTTAATGAATGTATCTCCTTTGGATG-AAAAAATTGACACCC
TAGGATTGTCTGAAGCTGTAGCACGCGGATTCAGGCAAATATGTTGAGCAAAATTCGCTATCGTCGAAACAAACTTCTCA
GTTCTATTGGATTTGCTGTGGTTGTGACTTGCGGACATCAAATCTGTTTCAA--TTTCTATCTAAAACAAACAGCACGTT
TTTAGCTGGTCTCTTCTTGTTCATATTTCTGCAGTCTCTGGCCATTGTTTGGAAGAATTGAAGTGCCATTCACCATTTGT
ATGTACACCCTCTGTTCCTAAATATAAGAAGTTTTGACACTTCAATTTAAACTGTCAAAACGTCTTATATTCAAGAACAG
AGGTACTCCCTTAGTGATCTAAACTCTCTTAT-----ATTTCTTTACAGAGGTAGTAGTACATATTTATATTCACCATTT
CGCCATCTAGAGCTAGCTATGTTAATCATATTTGATATATTTGGTATCATGTTAT--------------CTTTTATTCAG
TCAAATAGTGAAATCAGCACTGAAAATAT--ACCTCTTTTTCCTCCTCGTGTACCAGAGTCCAGGAGTCCGGACATCCTG
ACGGATTTGCTCGAACCAATGGGATGCTGCGGCAGCGTGAGTAGTTTTTACTCACATACATCTCATTTACAACTGGCAAC
TTTGATAACTGAATCGTGCACTAGCATCTGTATTGT--------------------------------------------
---------------------------AAGGAAGCCGTTTATCGAGTTATACATTAGTAAATCGAGTTCTTTGGTTATGC
TTCCCTTTGCAGAACCCTGTAGATGAGGAGGAACACCTAGACTACAGCTCTGGGAATGTGACTCTTATAACTGATCTAAA
GAGTTGGGAGAAGAAATTGGAAGATGCAACTGACGCCAATAAAACAGTAAGTAGCCTACAACCTAACTCATACTCTGGAC
ACAAGGATATATAGGTGCATGCAA-TTTCCAATTTCGAATCCCTTCAACTGTATTGATTAACCACGTTGGCATTTTTCAA
CTGCACAGCTTGTTGTAAAATTCAGCGCAGTATGGTGTGGCCCGTGTAGGATCGCTGCTCCTGCATACTCCGAACTCTCT
TTGAAGCATTCCGATCTTGTTTTCGTGTCCGTGGACGTAGACGAACTACCGGTACACAAATGTTCCGCCAATTCATTGCT
ACTTTACCTTTGAGCGAATGCCCAAACTAAATGTCATTTCGATATATGC----TTTTTGTCAGGAACTGGTCACGCAATT
CGACGTACGTGCCACGCCGACATTCATCTTCTTGAGAGATAACAAGGAGATCGACAAGCTGGTGGGGGGGAACCAGGTCG
ATCTTCAGCAGAAGTTCGAACCATACTGCCGGCCAGGCGACGAAGTCATGAGTAAACAGTCTTTCGAGGACAAAACCTGA
TGTTCCTGCCTGCCAGTCGATAGAGCTTCAGGACGAGCACGGCCTCCATTGGCTGGGAGCATCAGCAAGGGCCTGCTCGG
CGGCATACGTAGGTTCGAGAAACTGACCAGCAGAAGTAGGATTTCTTGGTAGCGTCCACACTCGATCAGCAGTAAATTAA
GTTAGCCCAGCATCTGTAACTTTGCGCCACACACGCTGTCCATATGAACTCGCACAAAAACGATGTACTGATTGATTGAT
ACCAGCCAGATGCCTTGAGATCTCATGAAATCATGACTGTACAACAAAATTGCCAATGCCATTGGTGATCTTGCGTCTCA
CTCATGTCAGGACTCAGGACAGAATTTAT--------CATCTATATAGAAACTATATGCAGGGGTTTGGTCGCTTGTTCA
ATGAAGCCAGACGTATCAAT---TATTTGGTGAGCTGCAGCTTTGACAGGACGGCGGCGGCCCGATCACCGCCGAGCAGG
AAATAGGGGTGCCGGAGCGCGGCGGCGGCGGAGAGGCGTCCCTTCTCCCGCTGCGCGATGAGCTTGGTGGCCAGGTCCCA
GCCCCTGCCGGAGTCGAGGTCCAGGATCTGCAGGTCGGGTCTCCGGCGCGTGGTCTCCCGCCACCTGTTGAGGTCGTAGC
CGGCGGCCTTGAGCTCGGAGTTGAAGTTCTTGAGGCCGGAGGGGGACCTGAGGGCCGGCGTGGCCATCTGCATGAGCACG
ATCCCGGCCGAGTACATGTCGAAGAGGTCGGGGCTGTTGAGCTGCCAGAGGATCGGGGAGAGGATGGCGGCGATGGGCTC
GGCGGGCGGCGTGGGGGTCTCCTCGGGGAGCACGTAGAGCTCGGGCGGGCAGTAGTCCGGGTCGAGCAGGGTGCGGTCGG
GCAAGTAGTTCTTGCCGATGCGCAGGTCGGTGGCGGCGCCGAAGTCGATGAGCTTGACCTGGCCCCGGCGGGTGACGACG
AGGTTGGAGGGCTTGATGTCGCGGTGGACGATGCCGGTGTCG
>SNPs
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-------------------------------------------S----------------------------SSS-----
----------------S---------------------------------------------S-----------------
---SSSS----------------------------------------------------------------S--------
------------------S-------------------------------------------------------------
--------S----------------------------------------------------S----------S-------
----------------------S-----------------------------------S-------------------S-
---------------------S---------S--------------------SS--------------------------
------------S-------------------------------------------------------------------
-----------------------------------S--------------------------------------------
---------------------------------S-SSS--SSSS-S----------------------------------
------------------------------------S---------------------------------------S---
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--------------------------------------------------S----------------------------S
------------S---------SSSS-------------------------SS---------------------------
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---S---------------------------------------------------S-------S----------------
---------S--------------------------------S----SS-------------------------------
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------------------------------------------------------------------S---SS--------
----S-------------------------------------------SSS------------------------S----
---S------------------------------------------------------S---------------------
----------------------------------------------S---------------------------------
----------S--------------------S------------------------------------------------
----------------------------------------------------S---------------------------
---------------------S---------------------------------S------------------------
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------------S-----S---------------------------S--S-----------------------------S
---S----------------SSS--------------------------------------------------S------
--------------------------------------S-----------------------------------------
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-------------------------------------------S------------------------------------
--------S-----------------------------------------------------------------------
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----------------S---------------------------------------------------------------
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>forward_177
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GGCTTCTTGGTCCTGCG---------------------------------------------------------------
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>reverse_2053
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----------------------------------------------------TGTCCACACTCGATCAGCAG--------
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