>input_sequence_66859
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------------------------------------------------------------------------------AT
GGCGCCGGTGAAGGTGTTGGGGTCGGCGGCGTTCACGAACGTGGCGCGGGTGCTGGTGTGCCTGGAGGAGGTCGGCGCCG
AGTACGAGATCGTCGACGTCGACTTCCGTTCCAAGGAGCACAAGGGCCCCGACCACCTCGCCAGAAACGTAAGCACACCC
AATCCTCAG-CTTGCAGCAGAGTTTGGAGAAATCCCTAAGTTTTGGTGCATA--------GAACTACCGCCGGATGCTGA
T--TGATTCATAACTCTGCTTTTCTCCGGCCAGCCGTTCGGCCAGGTCCCGGCGTTCCAGGACGGGGATCTCACGCTCTT
CCGTCAGTTTTCAATTTCCTATTGATTTTCAAATCCCTATACTCCGTACTGATTTTGAGATCACGGAATTATATATGCAT
CTCCG---TCTTCTCAGAGTCCCGCGCGATCTCACGCTACGTGCTCCGCAAGCACATGACCGACGAGGTCAACCTGCTGA
GGGAAGGCGACCCCAAGGAGTCGGCCCTCGTCGACGTCTGGCTGGACGTGGAGGCCCTCAGCTTCGACCCCGCCATGCGC
TCGGTGTTCTACCAGCACCGCGTCGCGCCGGCGCTGGGCGGGGCGCCCGACGAGAAGATCATCGGCGAGAGCGTCGAGAA
GCTGAGGAAGGTGCTGGACGTGTACGAGGCCCGGCTGAGCAAGCACAGGTACCTGGCCGGGGATTTCCTGAGCCTCGTGG
ACCTCAGCCACTTCCCTGAGACGCACTACTTCATGGGGATGCCGTATGCGGCGGTGTTCGACGCCTACCCTCGTGTTAGG
GCGTGGCTCGAGGAGCTGTTCGACAGGCCCGCCGTCAAGAAGGTCATCGCGCTCATGGCCAAGGACTTCAATTAG-----
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>chr5D_1_TraesCS5D01G440700
ACCCAAGAAACAGAGCAAGATGATTAAATCATGCCAACATGGTTCGAACGTCCGTCAGCCAAGATACAGCGCTCCAACCA
CTGGGCCAATTTTTTTACTAAATTTTCCATGCTATCACTACAAAATTTCTATATCTGCCATGCTTGCAGAAAACAGAAAA
AATCTACATTTTTCACGTGATTAGCACAAACATTTTTTTACAAATTTGCAATGCTTTTTCCACCACATTTACGCAGCCAA
ACTAAAATATTTCTATGTGTTGCCATGCTTGTAGGAAAAGTGATTAGCGAAAAACAAAATTTGCGCAGGTTTCGGATGTT
TATTTATTAAACTTTCAAGTGGAGCATAGAAAATTTGTACTTACATAAATGCCAAATTTGGAAATTTGATTTTTTTTCCT
GCAATCATGACCATCAGATATATATATATTTATTGTACGATGTTTTTTTATCTCGCCATGTTGAAATTTCTTGTTATGTA
TCATGGCAATTCGTGGGCTATTTGTCCCCTTAGTTTTTTGTGTTTTTCTGAAACTAATAGTTTCGGCTTTTTTTTTTGCG
CGGTAATAGTGTTGTTCATCATGGCAAATTTACCATCCATCATGGCACAAGAAATTTAATGCTTACTTTTATGATGCTCA
ATCCCGGGCCTCTTTTGGCCCATTATTTTTCTTTTAGCA-----------------------------------------
--------------------------------------------------------------------CGTGACGCACTC
ATCCACACATCCCTGCCGAAGTGCCGAGCGAGTAGAGGCATGTCCTTCGTAGAAGCTGCTTATTAATCAGGGCTAGTGCT
GGTAGACAAGACAATTCAGACGACGACTAGTTGTCCACACTATACGTACGTGTCACCTCACTTCAACTAGTCAAAGCACC
AAGTCTCATGGTGTACGACGTGTTGGACCTTCCCTTCTTTCTC--CT------CTCCCTCCCATGCTGTATAAATCAAGG
GGCAGGGCCGTGAGAATTCCGCATAAACCAGTGGAGGGGAGGGAGCACCGTCATCCATCAGCAGAGGAGAGC-AGAGCAT
GGCGCCGGTGAAGGTGTTGGGGTCGGCGGCGTTCACGAACGTGGCGCGGGTGCTGGTGTGCCTGGAGGAGGTCGGCGCCG
AGTACGAGATCGTCGACGTCGACTTCCGTTCCAAGGAGCACAAGGGCCCCGACCACCTCGCCAGAAACGTAAGCACACCC
AATCCTCAG-CTTGCAGCAGAGTTTGGAGAAATCCCTAAGTTTTGGTGCATA--------GAACTACCGCCGGATGCTGA
T--TGATTCATAACTCTGCTTTTCTCCGGCCAGCCGTTCGGCCAGGTCCCGGCGTTCCAGGACGGGGATCTCACGCTCTT
CCGTCAGTTTTCAATTTCCTATTGATTTTCAAATCCCTATACTCCGTACTGATTTTGAGATCACGGAATTATATATGCAT
CTCCG---TCTTCTCAGAGTCCCGCGCGATCTCACGCTACGTGCTCCGCAAGCACATGACCGACGAGGTCAACCTGCTGA
GGGAAGGCGACCCCAAGGAGTCGGCCCTCGTCGACGTCTGGCTGGACGTGGAGGCCCTCAGCTTCGACCCCGCCATGCGC
TCGGTGTTCTACCAGCACCGCGTCGCGCCGGCGCTGGGCGGGGCGCCCGACGAGAAGATCATCGGCGAGAGCGTCGAGAA
GCTGAGGAAGGTGCTGGACGTGTACGAGGCCCGGCTGAGCAAGCACAGGTACCTGGCCGGGGATTTCCTGAGCCTCGTGG
ACCTCAGCCACTTCCCTGAGACGCACTACTTCATGGGGATGCCGTATGCGGCGGTGTTCGACGCCTACCCTCGTGTTAGG
GCGTGGCTCGAGGAGCTGTTCGACAGGCCCGCCGTCAAGAAGGTCATCGCGCTCATGGCCAAGGACTTCAATTAGTTATA
CT----------------------TCTGAGTAAAGGTTTCGCCTGCCAGGTTACATTA----------TGTGGTGAGAAA
TAAGAAGGGGC-CCTATGCAATAAGACCAAGGTT--------------GACTGTATGTATTGTCTTTACATCTCACCACA
GACTTTCTTATCAATCTAGATTTGCCGCTACTATTTGATAACTTGTCAACGTGCTCTGTTTTCTGAGTATCACTACTCTG
TTTTATGCTCTGTTTTCGTACATGCAT-----------------------------------------------------
----------TGCATTGCTCTGC-------GCCCTCTCT----------------------CGACCAACTGAGCTTTCTT
TGCAATGGCACACATGACACAACGATAATAGG------------------------------------------------
---------------------------CATCAATGGGAACAAGACGAAAACAGCCAGTAGCTCTTTATTTCGACTGCAGC
AA---GAAACCAAATAATGCTATAGTACAGATGTGGAACACAACAATGACCAACCCTCCTCGCCAATGCTCAATGCTAAA
CCAATATGGAAATCAAATCGTGTCAC----ACAGGAAACGAATTTCTGAGTCGCCAGCCAGCTACCGCTTCAGTCCAGCG
GCCGAGACGCTCGC-------TCACTACACGGCCGACACGGCGTAGACCGCAGCAGCCGCGAGCGCAAACACCAGACCCG
CCGTGCCCCTGAGTGACGAGCCGCCGTTCTCCTGCAGGTACGCCGATGGCGTCGCCTTCGACCCAGAGCCGGCAGGTGTC
TGCCCCTCTGGCGTGGTCGGCGTGGCGGCGCCAGGAGCACTGCCACCACC---GTTGCACTTGCTCGCCGGCGGGGTCTG
CACGTTACACGCCTTGGGCAGCTCGAGCGCGCGCGTCTTGTTGATGGTCATGCCGCCGAGCGACGACGAGTCGCCGCCGA
GCGCGCTGCAGCAGTGGCGTAGCTAGCCCAACATGCCAGGGTGGTCCACCAATGCAAAATATTCACATAAATATATTTAT
TTATTATAAAAATATATTTTTCTCTATGCTATATATATTATGGGGAAATTCCAGGGTGGTCCATGGACCACCCTGTCCAC
CCCCTAGATACGCCACTGCGCTGCAG
>chr5B_99
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------------------TAAATTTTCCATGC---CACTACAAATTTTCTATATATGCCATGCTTTCAGAAAACA-AAAA
AATCTACATTTTTCACGTGATTAGCACAAACATTTTTTTACAAATTTGCAATGCTTTTTCCAGCACATTTACACAGCCAA
ATTAAAATATTTCTATGT-TTGCCATACTTGTAGGAAAAGTGACCAGCGAAAAACAAAATTTGCGCAGGTTTCGTATGTT
TATTTATTAAA-TTTCCAGTGGAGCATAGGAAATTTGTACTTACATAAATGCCAAATTTGGAAATTTA----TTTTTCCT
GCAATCATGACCATCAGATG--TATATATTTGTTGTACGACATTTTTTTATATCGCCATGTTGCAATTTCTTGTTATATA
TCATGGCATTTCGTGTGCGACATGTCCCCGTAGGTTTTTGTGTTTTTCTGAAACTAC-----------------------
------TAGTGTTGTTCACCATGGCAAATTTACCATCCATCATGGCAAAAGAAATTTAATGCTTACTTTTATGATGCTCA
ATCCCGGGCCTCTTTTGGCCCATTTTTTGATTATTGCCGACAAAATGGTTTCGCTCATTCCCTCTCCGGCGGAAAGGTTG
GTTCGCACTGGGTATCCCCGGGAAATGCAGCTATGTGCGCGCGTCCTTTTTATTTTTCGTCGTCGGGTCGTGACGCACTC
ATCCACACATCCCTGCCGAGC-------------GAGGCATGTCCTTCGTAGAAGCTGCTTATTAATCAGGGCCAGTGCT
GGT-----AGACAATTCAGACGACGACTAGCTGTCCACACTAC----ACGTGTCACCTCACTTCAACTTGTCAAAGCACT
AAGTTTCATGGTGTACGACGTCTTGGACTTTTCCTTCTTTCTC--CTCCCTCTCTCTCTGGCATGCCGTATAAATCAAGG
AGCGGGGCCGTGAGAATTCCGCATAAACCAGGGGAGGGGAG----CATCGTCATCCAACAGTAGAGCAGAACAAGAGCAT
GGCGCCGGTGAAGGTGTTTGGGTCGGCGGCGTTCACGAACGTGGCGCGGGTGCTGGTGTGCCTGGAGGAGGTCAGCGCCG
AGTACGAGATCGTCGACGTCGACTTCCAATCCAAGGAGCACAAGGGCCCCGATCACCTCGCCAGAAACGTAAGAACACAC
ACCAACC---CTTCTAGCAGAGTAG-----------TAAGTTTCGGATCATA--------GTACTACCACCGGATCTGGA
TGCTGATTCATAACTCTGCTTTTCTCCGACCAGCCGTTCGGCCAGGTCCCGGCGTTCCAGGACGGGGATCTCACGCGCTT
CCGTCAGTTTCCAAACTCTTATTGATCTTCAAATACTACTTATTCTCT----TTCTGAGAGCACCGAATTATATATGCAT
CTTCG---TCTCCTCAGAGTCCCGCGCGATCTCACGCTACGTGCTCCGGAAGCACAGGACCGACGAGGTCAACCTGCTGA
GGGAAGGCGATCCCAAGGAATCGGCCCTCGTCGACGTCTGGATGGACGTGGAGGCGCTCAGCTTCGACCCCATCATGCAC
TCGGTGTTCTACCAGCACCGCGTCGTGCCGGCGCTGGGCGGGACGCCGGACGAGAAGATCATCGGCGAGAGCGTCGAGAA
GCTGAGGAAGGTGCTGGAGGTGTACGAGGCCCAGCTGACCAAGCACAGGTACCTCGCCGGGGATTTCCTGAGCCTCGTGG
ACCTCAGCCATTTCCCCGAGACGCACTACTTCATGGGGATGCCGTACGCGGCGGTGTTCGACGCATACCCTCGTGTTAGG
GCGTGGCTGGAGGAGCTGTTCGCTAGGCCCGCCGTCAAGAAGGTCATCGCGCTCATGGCCAAGGACTTCAATTAGTTATA
CTACCAGGAACACCACGAAAAAATTCTGAGTAAAGGTATATATGTTTTCTTCCAGAATGTATGTAGTTTGTGGTGAGAAA
TAAAAAGGGGCACGTATGCAATATGACTTTGGCTGTATGTATATTCAAGAATGTATGTATTGTCTTTACATCTCACCA--
GACTTTCTTATCAATTTAGTACTACTACTCTGTTTATTAG---------CGTGCTCTGTTTTCTGAGTATCACTACTCTG
TTTTATGCCTTGT-------------------------------------------------------------------
--------------------------------------------------------------------------TTTCTT
TGAAAAGGCACACATCAAACAGAACAACACAAAATT--------------------------------------------
-------------------------------------------ACAAAAACAACCAGTACCTCTTTATTTCGACTGCAGC
AA---GAAACCAAATAATGCTATAGTACAGATGTGGAACACAACACTGACCAGTCCTCCTCGCCAATGCTCAACGCTAAA
CCAATATGAAAATCTAATCGTGTCACACTGACAGGAAACGAATTTCCGAGTCGCCAGCCAGCTGCCGCTTCAGTCCAGCG
GCCGAGATGCTCGC-------TCACC---------ACACGGCGTAGACCGCAGCAGCCGCGAGGGCGAGCACCAGCCCAG
CCGGGCCATGGAGTGACGAGCCGCCGTTCTCCTGCAGGTACGCCGACGGGGTCGTCTTGGATCCAGACCCTGCCGGTGTC
TGCACCTCGGGCGTGGTCGGCGTGGCGGCCCAG-----------------------------------------------
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>chr5A_723
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-------------------------------GTAGAGGCATGCCCTTCGTAGAAGCTGCTTATTAATCAGGGTTAGTGCT
GGT-----AGACAATTCAGACGACGACTAGTGCTCCACACGATACGTACGTGTCACCTCACTTCAACTTGTCAAAGCACT
AAGTTTCATGATGTACGACGTCTTGGACCTTTCCTTCTTTCTTTTCT------CTCTTTGGTATGCCGTATAAATCAAG-
----GGGCCGTGAGATTTCCGCATAAACCAGGGGAGGGGAG----CATCATCATCCATGAGCAGAGCATA-----AGCAT
GGCGCCGGTGAAGGTGTTCGGGTCGGCGGCGTTCACGAACGTGGCGCGGGTGCTGGTGTGCCTGGAGGAGGTCGGCGCCG
AGTACGAGATCGTCGACGTCGACTTCCATGCCAGGGAACACAAGGGCCCCGACCACCTCGCCAGAAACGTAAGAACACCC
ACCCGACCTTCTTGTAGCAGAGTAG-----------TAAGTTTTGGATCACAGTACTTCGGTACTACCACCGGATCTGGA
TGCTGATTCATAACTCCGATTTTCTCCGACCAGCCGTTCGGCCAGGTCCCGGCGTTCCAGGACGGGGATCTCACGCTCTT
CCGTCAGTTTTCAATTTCTTGTTGATTCTCAAATACTTG---TTCTCT----TTCCGAGATCACCGAATTATATATGCAC
CTTCTTCATCTCCTCAGAGTCCCGCGCGATCTCACGCTACGTGCTCCGCAAGCACAGGACCGACGAGGTCAACCTGCTGA
GGGAAGGCGACCCCAGGGAATCGGCCCTCGTCGACGTCTGGCTGGACGTGGAGGCCCTCAGCTTCGACCCCGCCATGCAC
TCGGTGTTCTACCAGCACCGCGTCGCGCCGGTGCTGGGCGGGACCCCCGACGAGAAGATCATCGGCGAGAGCGTCGAGAA
GCTGAGGAAGGTGCTGGACGTGTACGAGGCCCGGCTGAGCAAGCACAGGTACCTGGCCGGGGATTTCCCGAGCCTCGTGG
ATCTTAGTCACTTCCCCGAGACGCACTACTTCATGGGGATGCCGTATGCGGCGGTGTTCGATGCCTACCCTCGTGTTAGG
GCGTGGCTGGAGGAGCTGTTCGATAGGCCCGCCGTGAAGAAGGTCATCTCGCTCATGGCCAAGGACTTCAATTAGTTATA
CT----------------------TCTGAGTAAAGGTCGCGCCTGTCAGGTTACATTA----------TGTGGGAGA---
----------C-CGTATGCAATAAGACCAAGGTC--------------GACTGCATGTATTGTCTTTACATCTCACCACA
TACTTCCTTATCAATTTAGACCGTATGCAATAAGACCAAGA---------------------------------------
TTTTCTGCTCTGTTTTCATACGTGCAT-----------------------------------------------------
----------TGCATTGCTCTGCGGTCTGCGCCCTCTCC----------------------CGACCAACGGAGCGTTCTT
TGCACAGGCACGCATGACACATCGATAAGAGGCAAGAATCTACTATCTGTTTGTACCATCA-------------------
----------------------------ATCAATGGGAACAAGACGAAAACAACCAGTAGCTCTTTATTTCGGCTGCAGC
AA---GAAACCAAATAATGCTATAGTACGGATGTGGAACACAACACTGACCAATCCTCCTCGCCAATGCTCAATGCTAAA
CCAATATGAAAACCAAATCGTGTCAC----ACAGGAAACGAATTTCTGAGTCGCCACCCAGCTACCGCTTCAGTCCATCG
CCCGAGATGCTCGC-------TCACTG---------CACGGCGTAGACCGCAGCAGCCGCGAGCGCGAACACGAGGCCCA
CCGTGCCCTGGAGCGACGAGCCGCCGTTCTCCTGCAGGTACGCCGACGGCGTCGCCTTCGACCCCGAGCCGGCAGGTGTC
TGCACCTCCGGCGTGGTCGGCGTGGCGGCGCCAGGGGCACTGCCACCAC---TGTTGCACTTGCTCGCCGGCGGGGTCTG
CACGTTGCACGCGTTGGGGAGCTCGAGCGCGCGCGTCTTGTTGATGGTCATGCCGCCCAGCGACGATGAGTCGCCGCCGA
GCGCGCTGCAG---------------------------------------------------------------------
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>chr5B_2032
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--------------------------------------------------GTGCTCTGTTTTCTGAGTATCACTACTCTG
TTTTCTGCTCTGTTTTCTGAGTATCAGTACTCTGTTTTCTGCTCTGTTTTCCGAGTATCACTACTCTGTTTTCTGCTCTG
TTTCCATATCTGCATCGCTCAGC-------GCCCTCTCTTTTTCTAGATATGTACTTTCGTCGAGGAACTGAGCTATCTT
TGCAAAGGCATACATCGATAAGT----------AAGAATCTACTATGTGTTTGTACCCCGACCTGTGATGATGTGATAGG
TGTTTGCACATCTCGATCAAATTGAACCATCAATGGGAACAAAACAAAAC---------CCACTTTATTTCAAGTGCAGC
AA---GAAACCCAAAG------TAGTACAGATGAGGAACACACCACTGACCAATCCTCCTCCCCAATGCTTAATGCTGAA
CCAATGTGAAAAACAAATCATGCCAC----ACAAGAAACGAATTTCTAGGTCGCCAGCCAGCTAGCGCTTCAGTCCAGC-
----------TCACTATGTAGTCACTACACGGCCGACACGGCATAGACCGCCGCAGCAGCGACCGCGAACACCAGGGCCA
CCGTGCCCTGGAGCGACGAGCCGCCGTTCTCCTGCAGGTACGCCGACGGCGTTGCCTTCGACCCCGAGCCGGCAGGTGTC
TGCACCTCTGGCGA---------GGCGGCGCCAGGAGCACCGCCACCACCGTTGTTGCACTTGCTCGCCGGCGGGGTCTG
CACGTTGCATGCCTTGGGCAGCTCGAGCGCGCGCGTCTTGTTGAGGGTCATGCCGCCGAGCGATGACGAGTCGCCGCCGA
GCGCGCTGCAG---------------------------------------------------------------------
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>chr5A_2162
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---------------------------CATCAATGGGAACAAAACAAAAAAG---------ACTTTATTTCAACTGCAGC
AAGAGGAAACCCAAAG------TAGTACAGATGTGGAACACAACACTGACCAATCCTCCTCCCCAATGCTTAATGCTAAA
CCAAAATGAAAAAGAAATCATGCCAC----ACAGGAAACGAATTTCTAGCTCGCCAGCCAGCTAGCGCTTCAGTCCAGCG
GCCGAGATGCTCACTATGCAGTCACTACACGGCCGACACGGCGTAGAACGCAGCAGCCGCGAGCGCGAACACCAGGCCCA
CCGTGCCCTGGAGCGACGAGCCGCCGTTCTCCTGCAGGTACGCCGACGGGGTCGTCTTGGATCCAGAGCTTGCCGGTGTC
TGCACCTCGGGCGTGGTCGGCGTGGCGGCGCCAGGAGCAGTGCCACCGCC---GTTGCACCTGCTCGCGGGCGGGGTCTG
CACGTTGCACGCCTTGGGGAGCTCGAGCGCGCGCGTCTTGTTGATGGTCATGCCGCCCAGCGAGGACGAGTCCCCACCGA
GCGCGCTGCAG---------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------SSS---------S---------S----------S---------S----
--------------------------------------------------------------S---------S-------
-S----------------S-------S----------------SS-----------------------------S-----
-----------S----S------------S-------------------------------------SSSSS--------
-------------------SSS---------S--------SS---------S-----------S-------------S--
--------S------S--S-SS-------S---S----------------------SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS------------S----------------------------S--------------------------------
------------------------S---SSS-S--SS-S-----------------------------------------
--------------------------------------------------------------------------------
-------------------SSSSSSSSSSSS-------------------------------------------------
---SSSSS------------------------------------------------------------S----------S
----S----------------S---------S------------------------S--SS-----S-------------
S--S---------------------------S---------SSSS--S------------------S---S---------
------------------S-------------------------------------------------------------
---------------------------S---------------------------------------------S------
-SS-SS-SS-----S--------SSSSSSSSSSSSS----------SS-------------S------S------SSS--
----------------------------S---------------------------------------------------
------------------S---------------S-S-S-SS-S-SSSSSSS--S---------S---------------
--S--------S--------------------------------------------S-----------------------
-------------------S----------------------------------------------------------S-
------------------------------------------S-------------------------------------
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----------------S---------------------------------------------------------------
--------S--------------S--------------------------------------------------------
-------------------------------------S-------S----------------------------------
---S---------S------------------------------------------------------------------
---------------S----SS-S-S----SS---SS-SS-SSSSSSSS-------------------------------
-----------------S---S----------------------------------------------------------
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-----S---------------S------S---------------------------------------------------
----------------------------------------------------S---------------------------
---------------------------------------------S-------S--------------------------
--------S-----------------------------------------------------------------------
-------S----------------------------------------------------------S--------S----
--------SS------------------------------------S---------------------------------
---S----------------------------------------------------------------------------
------S-------------------------------------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_888
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--------------------------------------------------------------------AGGGCTAGTGCT
GGTAGACA------------------------------------------------------------------------
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>reverse_2038
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-------------------------------------TTCGCCTGCCAGGTTACATT-----------------------
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