>input_sequence_66825
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-----------------------------------------------------------------------------ATG
TCATCAACCGAGAAAACCAATGCTGCCGGCGGCGACAAGCTAAGCATGAAGCTGCTGGTGAACAGCAAGTCCCAGCGCGT
GCTGTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCCTCCTCACGCTGCCGCTGGGCACGGTGGCCAAGC
TGATCGCCGACGACAGCCCCGCGGCCGGCTCCGTGGTCAACCTCTACAGCAGCGTCGACAGGCTCGACGACACCTACATC
TGCCGCGACAACAACAAGGACACCCTGCTCAGGCCCGCCGGCGGCTGCGAGAGCGGGAGGTTGCTCCAGCTTCCAGAGGC
AAAGGCGCCGCAAACCACTCTGCAAATCTTCCGCTGCACCGGCACCTA------CTTACCCAACTGCAGGAGCTACGTGA
CCATGGCAAGTGAGACGCCGTGTGGAAGCTGTGGCGCAAGGATGACGACTCAGGCGCTGC---TTGT------------T
GGCTCCGTCGGCGGCGCCGGGTCGCCCGCTGCGGCGGCAGGG---GCCGCCGGGTTTGTGCAGCGGATCGTGACGTACAC
GGTGATGGACGACCTCAAGATCGCGCCCATGTCCACCATCTCCGGGATCACCATCCTCAACACCTTTGGCATCACGGACA
TCGGCTCGCTCCAGGAGAAGACCGTGCAGCTTGGCTACGCCGAGGTAATGAGTGGCT-----ACTTGTGCAAATTGATCG
TTCAGTTGATTTA--TTTTCCCTTTCATTAGGACTGCAAGTCTTAGCTCATTCTTTAATTGTTGATTTTTCATTTTTGGT
AGGGTTTGGAGATGCTGAAGGCGTCACTGCAGTCGAAGACGGTTCTCACCGACGTCTTCCTTGGGAAGAAGCGGAAGGCT
TCAAGCCCTTGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3A_1_TraesCS3A01G130700
GGACGGCGGTGTGGACCGCATGCCGCGACGCTATGGCCCGAAAGGGCGACGCGGCAGCGACGTGGATCCGTGCAGCCGCG
AGGAGAACCACGGGGTGACGGCGTTGTGGTCCGACCGGTCAATGCAAAGGTAACTCGTTGCTCGATCAATGGAGGGTTGC
ATTATACTCGAGGACAGGGCAACGACAGCCGGTGCACAACAATGGACGGGCAGACGCGCGGACGACGACCATGATGGGCC
GCCACGTCGTGTGAGGCCGCTCGGTCGGAGAAGAGTCCTGGTGGTCGGGCCGGAGTTGGAGTAGAGGCGCACGAGGGTCG
ACGGCGGCGGCGAGCTACGAAAACCGATCTTAGATTAAAAAAACCAAAAAGAAACACCGATTAAGACGACTGGCCACGAG
AGAAAAATCCAGATCAAAAGATCGCGAAAAAA---CTCTAGAGCAGCCGATCAACATGACCGGTGAACGAACCCTAGGTA
CGGGCGGCGTGGCCCCCGATGGCGATCATGGAGATCGATCACCCTGATGCGGCGCGGTGTGAAAGCGGCGGCGGCTAGGA
TTGTGGATCAAGACTAGGCTGATAGATGAATAGATCGGAAATTTTCTCGCAAAAAAGACTAGGCTGATACCATGTGAAAG
AAATATTTGATGCAAGAT---------------------------------AAGGTAGAAATAAATTCCACTTTATCCTA
TACTTCCTGATAATCAGGATACTCAACAAATCTGAGCCAGCAACATCGGCACATCTCAACAGAGAAACCGGACTTGTTGT
AATCTGCACTGGGGAATCATAATTGTAACGCTCAACTTGCCAATGTAATCTAGCTATATCCCGCGGGTAGTCAGGGATAA
CCATATTTATTTGTTGCAATCTGTAAATTTATCATGTTAGTATCTTGTG-TATCGTTGTAATCTTGGCTATCAAGGATCG
TCCTCGTATATATACATGGCAATGCCCAGGGGCATATCCCGGCAAATCACGGACCCGTTTTTCGGTCGAAATCAAAGATG
TCATCAACCGAGAAAACCAATGCTGCCGGCGGCGACAAGCTAAGCATGAAGCTGCTGGTGAACAGCAAGTCCCAGCGCGT
GCTGTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCCTCCTCACGCTGCCGCTGGGCACGGTGGCCAAGC
TGATCGCCGACGACAGCCCCGCGGCCGGCTCCGTGGTCAACCTCTACAGCAGCGTCGACAGGCTCGACGACACCTACATC
TGCCGCGACAACAACAAGGACACCCTGCTCAGGCCCGCCGGCGGCTGCGAGAGCGGGAGGTTGCTCCAGCTTCCAGAGGC
AAAGGCGCCGCAAACCACTCTGCAAATCTTCCGCTGCACCGGCACCTA------CTTACCCAACTGCAGGAGCTACGTGA
CCATGGCAAGTGAGACGCCGTGTGGAAGCTGTGGCGCAAGGATGACGACTCAGGCGCTGC---TTGT------------T
GGCTCCGTCGGCGGCGCCGGGTCGCCCGCTGCGGCGGCAGGG---GCCGCCGGGTTTGTGCAGCGGATCGTGACGTACAC
GGTGATGGACGACCTCAAGATCGCGCCCATGTCCACCATCTCCGGGATCACCATCCTCAACACCTTTGGCATCACGGACA
TCGGCTCGCTCCAGGAGAAGACCGTGCAGCTTGGCTACGCCGAGGTAATGAGTGGCT-----ACTTGTGCAAATTGATCG
TTCAGTTGATTTA--TTTTCCCTTTCATTAGGACTGCAAGTCTTAGCTCATTCTTTAATTGTTGATTTTTCATTTTTGGT
AGGGTTTGGAGATGCTGAAGGCGTCACTGCAGTCGAAGACGGTTCTCACCGACGTCTTCCTTGGGAAGAAGCGGAAGGCT
TCAAGCCCTTGAGGGATATTATAGTTGTCACTGCAGTCGAAGATA---------GTTCTCACCGACTTCCATGGAAAGAA
GC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------GGAAGGCCTCGCCCTTGAGCGATATTAGCTGCGGCG----
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCCTTGTTGATGT
GGTTTGCTTTGCTTTGTTGAACATTTTATACAATGTCTCCTCTTAGGAACAGGAAACAAAACACATGAATCCTGTTGAAC
GAACGTTTTCGTGGAGGTGGTTTT-TGAGGGAACATTCTATGA--TGTGTTTGATCCCACTCCTAAATCTTAAAGGGTGT
GTCTAGGCCTCATCTAGATGTGACATAACTATGTCACATCTAAGTATGACATCATCATTGTTCGTTGCCCTCTTGTTTGT
TTGTTTGTCTCTAGCCTGTAATTTTTTTTTTGTGTTAATTAGTCGCTCCAGCCCGACAGGAAGCT-------ATCCTGCT
ATCGCAGGACGTGCGTACAAACTACTTAAGCATTCCGTGGCTCCTAGCAAAAAAGCACCAAACTAC--------------
--------------------------------------------------------------------------------
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-----------------------------AACAGCTCTGATTAGCTAGTTATTTCCCACCTTGAAAAACTAGTTACGTTC
CCTTGCCTCGGGAAAAGAAGCTAGTTACGTGCCTTCCAATTAGCAGGTTACGATTAAACAACGCAGGAACTAACTTAATT
TGAAAAATGTTCATGAATTAAAAAACGTCTAAGATTTCAAGAATTGTTCGTGATTATGAGTAAATGTTATTCAAAAAATG
TTCATGAATTTACAAAATTATTTGTGAATTCAAGAAATGTTCGCAAATTTGAAAAATATTCACAAGTTGATAAATTGTTT
ATCAATTTTTTTG--AAAAAAACATAAATTCAAAAAGTGTGCATGATTCTAAAAAAATGTCAAAATTTAAAAAATATTCA
TGATTTTGTAAAATGTTCGAAGATTTAAAGAATGTGAATGAATTCAAAAAATCTTCTCG-TATTTCAAAACATGTTCATG
GATTTGTAAATTGTTCCCATATTTATAAAAGTGTTACAGTATTTCTATAAGTTCTCCAAAAGTTTT
>chr3D_1
GGACAGTGGTGTGGACCGCATGCCGCGGCGCTATGGCC-GAAAGGGCGACGCAGCTGCGGCACGGGTCCGTGCAGTCACA
TGGAGAACCACGGGGTGGCGGCGCTGCTGTCCGACGGGTCAATGCAACGGTAACCCGTTACTCGATCGGTGGAGGGGTGC
GTTATACTCGGGGACAGGGCAACGACAGCCGACGCACAACAACGGACGGGCAGACATGCGGACGAGGGCCGTGACGGGCC
GCCGCGTCATGTGAGGCCGCCCGGTCGGAGAAGTGTCCTGGTGGTCGCGCCGGAGTTGGAGTAGAGGCGCGCGAGGGTCG
ACGGTGGCGGCGGGCTACGAAAACCGATCTTAGATCAG-------AAAACAAAAAAAAGATTAAGACGACGA--CACAAG
AGAAAAATCCGGATCAAAAGATCACGAAAAAAACTCTCTAGAACAGCCGATCAACATGACCGGTGGACGAACCCTAGGTA
CGGGCGGCGTGGTCCCCGATAACGATCATGGAGATCGACCGCCCTGGTGCGGAGCGGTGTGAAAGTGGCGGCGGCTAGGA
TTGTGGATCAAG---------------------------------------------ACTAGGCTGATACCATGTGAAAG
AAATATTTGATGCAAGACAAGGTAGAAATAAATTCACCCGTGAAAAAGAAAAAGGTAGAAATAAATTCTACTTTATCCTA
TACTTCCTGATAATCAGGATACTCAACAAATCTGAGCCAGCAAAATCGGCACATCTCAACAGAGAAACCGGACTTGTTGT
AATCTGCACTGGGGAATCATAATTGTAACGCTCAACTTGCCAGTGTAATCTAGCTATATCCCGCG--TAGTCAGGGATAA
CCATATTTATTTGTTGTAATCTGTAATTTTATCTTGTTAGTATCTTGTG-TATCGTTGTAATCTTGGCGATCAAGGATCG
TCCTCGTATATATACATGGCAATGCCCAGGGGCATATCCCGGCAAATCCCGGACCCCTTTTTTGGTCGAAATCAAAGATG
TCATCAACCGAGAAAACCAATGCTGCCGGCGGCGACAAGCTAAGCATGAAGCTGCTGGTGAACAGCAAGTCCCAGTGCGT
GCTGTACGCCGAGGCCGGGAAGGACGTCGTCGACTTCCTCTTCTCCCTCCTCACGCTGCCGCTGGGCACGGTGGCCAAGC
TGATCGCCGACGACAACCCCGCGGCCGGCTCCGTGGTCAACCTCTACAGCAGCGTCGACAGGCTCGACGACACCTACATC
TGCCGCGACAACGCCAAGGACGACCTGCTCAGGCCCGCCGGCGGCTGCGAGAGCGGGAAGCTGCTCCAGCTTCCGGAGGC
AAAGGCGCCGCAAACCACATTGCAAATCTTCCGCTGCACCGGCACATA------CTCACCCAACTGCAGGAGCTACGTGA
CCATGGCAAGTGGGACGCCGTGTGGAAGCTGCGGCGCAAGGATGACGACTTGGGCGCAGC---TTGT------------T
GGCTCCGTCGGCGGCGCTGGGTCGCCTGCTGCTGCGGCAGGGGCCGCCGCCGGGTTTGTGCAGCGGATCGTGACGTACAC
GGTGATGGACGACCTCAAGATCGCGCCTATGTCCACCATCTCCGGGATCACCATCCTCAACACCTTTGGCATCACGGACA
TCGGATCTCTCCAGGAGAAGACCGTGCAGCTTGGCTACGCCGAGGTAATGACTGACGACTTCACTTGTGCAAATTGATCG
TTCAGTTCATTTT---TTTCCCTTTCATTAGGACTGCAAGTCTTAGCTCATTCTTTAAGTG-------TTGATTTTTGGT
AGGGTTTGGATATGCTGAAGGCGTCACTGCAGTCAAAGACGGTTCTCACCGACGTCTTCCTTGGGAAGAAGCGGAAGGCC
TCAAGCCCTTGAGCGATACTATTTAGTTGCGACGTCCTTGTTAATGGGCCGATGCTAGGCGTAAGCCGGATGATAACTCC
TTGATAACCGTCCGATCATGCACATCATAGCCGTTCACTTAAAGTCCCACGGATCCCACTTCCTCTCAGATGCACATGTT
CGCCTCGCACACCACAGCACAACGCCCAGTCGCCCACTGTCCCGCTACGATGCAACGGACGTCGACGTTGCCGGAGCTAT
GATGCAGTGGCCGTTGACGCCTCCGTACCTGTGATGCAGCGGTCGTCGACGCCGCCGGAGTTGCGCTGCAGCGGCCGCGA
CGCCGCCGGAGCAGTGATGCAGCGGTCGTGGACGCCGCCGGAGTTTGCGCTGCAGCGGCCGCGACGCCGTCGGAGCAGTG
ATGCAGCAGCCGCGTCGCCTCCGGAGTTGCTATGTAGCGGCCGCCGGCCCTGCCGAAGCTGCAATGCAGCGGTCGTCGAC
GCCACCGGTGTTGTCATGCAGCGGTGGCGACGCTGCCGGAGCTGCAATACATCGGCCGCCGGAGCTGCAATGCAAACGGT
CATCGACGCCACCGGTGTTGTGATGCAGCGGCCTGCAACAGACGTCGACGCCACCGGAGTTGTGATGCAGCGGCCGCCGG
AGCTGCAATGCAACGGACGTCAACGTCGCCGGAGTTGTGATGCAGCGGCCGCGACGCCACTGGTGCTATGATGCAGTGGG
CGTCGATGTTGGCTGTTGTGGATGAGTTGCGTCGCAGCCAGAGCAACCCTGCGACGAGGTGTCCTCGCAGTAGGAGTAGC
GCCGAGCCGCCGACGAGGTGCACCGCAGCATGGCGGCAACGGGCGAATTGCTGCGTCGCAGCACGATGGCCGTGGGTGAG
CGGGGCATCGCATCGCCGGCAGAAACGACGAGCGGCCGCCTCCTCACACATGTGTGTGTCGCCCATGCTAGGTTGCAGCA
CCGCGGTGGTGGCGTTGGGGGCTTCAGCACCCACCTTTTGCGGCGGGGATGTGGTAGGTGGTGGGTGCCGTCGATCCTCC
CTGGTTCTCTGTAGCGGGGCGGGGTGGCCGGCGTTGCCATGGGAGCTCTCCCCTTCGAGCGGGATGAGCAGAGATGGGGA
GGAGAAAAAGACGAGTGGCGAAGTCTGCGGAGAAGAAGGGACGCGAAGAGATAAGGCCGGCCGGCGGTACATGGGCCCAG
AGGACACGTGGCAAGCAACGCGGGAGGCTTACGTTTGTTATTATCAGCCGGTGGAAACGGAGTGTTTTCCTTGTTGATGT
GGTTTGCTTTGCTTTGTTGGACATCTTATACAATGTCTGCTCTTAGGAACCGGAAACAAAA-ATATAAATCCTATTGAGT
TAACGTTTTCATGGAATTGGTTTTCTGAGAGAACACTCTATGA--TGTGTTCGATCCCACGCCTAAATTTTAAAGCGGTG
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3B_744
--------------------------------------------------------------------------------
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-----------------------------------------------------------CAGAGAAACCGGACTTCTTGT
AATCTGCACT-GGGAATCATAATTGTAACGCTCAACTTGCCAGTGCAATCTAGCTATATCCCGCG--TAGTCAGGGATAA
CCATATTTATTTGTTGTAATCTGTAAATTTGTCCTGTCAATATCTTGTATTATCGTTGTAATCTTGGAGATCAAGGATCG
CCCTCGTATA--TACATGGCAATGCCCAGGGGCATATCCCGGCAAATCACGGACCCGTTTTTCGGTCGAAATCAAAGATG
TCATCAACCGAGAAAACCAATGCTGCCGGCGGCGACAAGCTAAGCATGAAGCTGCTGGTGAACAGCAAGTCCCAGCGCGT
GCTGTACGCCGAGGCTGGGAAGGACGTCGTGGACTTCCTATTCTCCCTCCTCACGCTGCCGCTGGGCACGGTGGCCAAGC
TGATCGCCGACGACAGCCCCGCGGCCGGCTCCGTGGTCAACCTCTACAGCAGCGTCGACAAGCTCGACGACACCTACATC
TGCCGCGACAACGCCAAGGACGCCCTGCTCAGGCCCGCCGGCGGCTGCGAGAGCGGGAAGCTGCTCCAGCTTCCGGAGGC
AAAGGCGCCGCAAACCACACTGCAAATCTTCCGCTGCATCGGCACCTA------CGTACCCAACTGCAGGAGCTACGTGA
CCATGGTAAGTGGGACGACGTGTGGAAGCTGCGGCGCAAGGATGACGACTCAGGCGCAGC---TTGT------------T
GGCTCCGTCGGCGGCGCTGGGTCGCCTGCTGCGGCGGCAGGG---GCCGCCGGGTTTGTGCAGCGGATCGTGACGTACAC
GGTGATGGATGACCTCAAGATCGCGCCCATGTCGACCATCTCCGGGATCACCATCCTCAACACCTTTGGCATCACGGACA
TCGGCTCGCTCCAGGAGAAGACCGTGCAGCTTTGCTACGCCGAGGTAATGACTGACT-----ACTTGTGCAAATTGATCG
TTCAGTTGATTTTGTTTTTCCCTTTCATTAGGACTGCAAGTCTTAGCTCATTCTTTAAGTG-------TTGATTTTTTGT
AAGGTTTGGAGATGCTGAAGGCGTCACTGCAGTCGAAGACTGTTCTCACCGACGTCTTCCTTGGAAAGAAGCGGAAGGCC
TCAAGCCCTTGAGCGATAT--TAGTTGTCACTGCAGTCGAAGACAGTTCTGACTGTTCTCACCAACTTCCTTGGGAAGAA
GC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------GGAACGCCTCGCCCTTGAGCGATATTAGCTGCGGCG----
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCCTTGTTGATTT
TGTTTGCTTTGCTTTGTTGAACATTTTATACAATGTCTGCTCTTAGGAACAGGAAACAAAA-ACATGAATCCTGTTAAAC
AAACGTTTTCGTGGAAATGGTTTTGTGAGGGAACATTCTATGATGTGTGTTTGATCCCACGCCTAAATCTTAAAGCGGTG
--------------------------------------------------------------------------------
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------------------------------------------------------------------
>chr3D_1039
--------------------------------------------------------------------------------
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-----------------------------------CAAGCTTACCATGAAGCTCCTGGTGAACTCCAAGACCCAGCGCGT
TCTGTACGCTGAGGCCGGCAAGGAAGTCGTCGACTTCCTCTTCTCCCTCCTCACCTTGCCGGTGGGCACGGTCGTCAAGC
TTCTGAGCACCGA---CACCATGGTCGGCAGCGTCGGCAACCTGTACGGCAGCGTCGAGAAGCTCGACGACACCTACATC
AGCCGTGAGGACGCCAAGAAAGCCCTTCTCACCCCTGTCGCTGGTTGTCAGGGCGGCATGCTGCTCCAGCTT---GAGGC
AGCGCCGCCTGAATCCGCTTACT---TCTACCGTTGCAACAGCTCCATCCACAGCTACCCAAACTGCAGAAGCTACGTGA
CCAAGGTAAGTGGCTCAACGTGCAAGAGTTGCCACACTAAGATGACCACGCAGCTGGTGGAGGTTGT------------G
GATCCGGACGCTGGCGCGGTGCCTTCTGCTGCTGCTGGAGCT---------GGGTTCGTGCAGAGGATCGTGACGTACAC
TGTGATGGACGACCTGAAGGTGTCGCCCATGTCTTCCATCTCTGGGATCACACTCCTCAACAAGTGTGGGGTCACGGACA
TCGGGTCGCTCCAGGAGAAGACCGTGCAGCTTGGCTACGATGAGGTAA--------------------------------
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>chr3B_1048
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------CATGAAGCTGCTGGTGGACACCAAGGCCCAACGCGT
GGTCTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCCTCCTCACCTTGCCAGTGGGCACGGTCGTCAAGC
TTCTGGGGACCGA---CACCATGGTCGGCAGCGTCGGCAACCTGTACGGCAGCGTCGAGAAGCTCGACGACACCTACATC
GTCCGTGAGAACGCCAAGAAAGCCCTGCTCGCCCCTGCTGCTGGTTGCGAGAGCGGCAACGTTCTTCAGTTACCAGAGGC
GGAGGCACCGGAGACCGATCGCT---TTTTCCGCTGTAGCTCCTTCTA------CTACTCCGACTGCTACAACAATGTTA
CCAAGGTAAACGGTACTCCATGCTCGCATTGCAAGAATAGCATGGGGACGGAGATGCAGC---TTGTGGTTCCGACCGCT
TGCTCCGATGGTGGCGCGGTGTCAGCTGCTGCAGGCA---CT---------GGGTTTGTACAGGGGATCGTGACGTACAC
GGTGATGGACGACCTGAAGGTGTCGCCCATGTCTTCCATCTCTGGGATCACCATGCTCAACACGTTTGGCGTCACGGACA
TCGGGTCGCTCCAGGAGAAGACCGTGCAGCTTGGCTACGAGGAGGT----------------------------------
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------------------------------------------------------------------
>chr4A_2124
--------------------------------------------------------------------------------
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------------------------------------------------------------------------AAGGGTGT
GTCTAGACCTCATCTAGATGTGACATAACTATGTCACATCTAAGTATGACATCATTATTATTTGTGGCCCTCTTGTTTGT
TTGTTTGTCCCTAGTCTGTATTTTTTTTGTTGTGTTGATTAGTCGCTCCAGCCCTCATCTAAGTATGACATCATCCTGCT
ATCGCGGGACGTGCGTACAAACTACTTAAGCATTCCGTGGCTCCTTGCAAAAAAGCACCAAACTATAACAGCTCTGATTT
GTGCATAAACAAGTCATTCTGACTAAGGATAACCTTGCAAAACGTAATTGGGTAGGTCCGTCTCGATGTAGCTTCTGTGA
TCATTCTGATAACATCAAACACCTCTTTCTCGATTGCCCGTTGGCTAAGATTCTGTGGCGGTCGGTTCATATTGCTTTTA
ATATTAGTCAGCCCACCTCTATTAGTATGTTATTTGGAACATGGCTAGATGGGGTGGATTCTGACATTGCAAGACACATT
CGGGTTGGCGTTTGTGCACTTTTGTGGGCAATATGGAATTGTAGAAATGACTTAGTCTTTAACCGATCAACAAACATTCA
CTTTTTGCAGGTTATCTTCAGGGCCACGGCGTTCATCCGTATGTGGTCGCTACTCACTCCGACGGAGGCCAGGGAGCGTT
TGGTTACTGCGTCTACCCGATGGGAGATGGTAGCTCGGGATATTTTCAACCGGTTTGGATGGCGGTCATGTAATAGGATA
GACATGTATTGATCCTATTGTTTTGCCAGCCGGTTGTGGCTTTGGGCTTTTCTTTTTTACAGATTTTGTTTTAGTTTCGA
CTATGACCTTTCGGTACTTTGCTACTGGTTTATCCTTTTAATAATATGAGCCGTATGCATCGTTCTGATGCAGAGGCTGG
GGCACGTCCCCTTTTCCAAAAAAAAAAATAACAGCTCTGATTAGCTAGTTATTTCCCACCTTGAAAAACTAGTTACGTTC
CCTTGCCTCGGGAAAAGAAGCTAGTTACGTGCCTTCCAATTAGCAGGTTATGATTAAACAACGCAAGAACTAACTTAATT
TGAAAAATGTTCATGAATTAGAAAACGTCTAAGATTTCAAGAATTGTTCGTGATTATGAGTAAATGTTATTCAAAAAATG
TTCATGAATTTACAAAATTATTTGTGAATTCAAGAAATGTTCGCAAATTTGAAAAATGTTCACAAGTTGATAAATTGTTT
ATCATTTTTTTGAAAAAAAAAACATAAATTCAAAAAGTGTGCATGATTCTAAAAA-ATGTCAAAATTTAAAAAATATTCA
TGATTTTGTAAAATGTTCAAAGATTTAAAGAATGTGAATGAATTCAAAAAATCTTCTCTTTATTTCAAAACATGTTCATG
GATTTGTAAATTGTTCCCATATTTCTAAAAGCGTTACAGTATTTCTATAAGTTCTCCAAAAGTTTT
>SNPs
----S-S--------------------S----------S-------------S--S---S-SS--S---------S-S-S
S----------------S-----S--SS-------S-----------S------S----S-------SS-------S---
S---------S--------------------SS---------S------------SS--------S-S--S---S-----
---S----S-----------S------------S-------------S----------------------S---------
----S-------S----------------------S-SSSSSSSS----SS---S-SS------------SSSS---S--
----------S------------S------------------S----------------------S--------------
------------S-------SS----------------S-S-----S-----S------------S--------------
------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
-----------------S--------------------------------------------------S-----------
-------------------------------------------S------------------------------------
------------------------------------------S----------------------SS-------------
----------------S----------------S----------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------SS-------S------------------------------------S-S-------------------
--------------------------------------------------------------------------------
------------S------------------S------------------------------------------------
-----------------S--------S-----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S--S-------------------------
------------S---------------------------------------------S--SSSSSSS--S---------
-------------------------------------------------------------------------------S
-------------S-----------------------------S-------------------S------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------S----------------------S------------------
S--------------SS-------------------------------------------S-------------------
------S------------------------------------------------S---S--S--S--------------
---------S----S-----S-------S-------S-----------------SSSSSS---SS---------------
-----S---------------------------------------S-------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S--------------S--------------
--------------------S-----------------------------------------------------------
---------------------------------------------------------S----------------------
----S------SS------------------------------------------S------------------------
------------------S---------------------------------------S---------------------
------------------------S------S----------------------------------
>forward_161
--------------------------------------------------------------------------------
-------------------------------------------------------------TCGATCAATGGAGGGTTGC
A-------------------------------------------------------------------------------
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>reverse_1293
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------------AACAAGGACACCCTGCTCAG------------------------------------------------
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------------------------------------------------------------------
>forward_288
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AGAAGAGTCCTGGTGGTCGG--------------------------------
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------------------------------------------------------------------
>reverse_3281
--------------------------------------------------------------------------------
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GAACGTTTTCGTGGAGGTGG------------------------------------------------------------
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------------------------------------------------------------------
