>input_sequence_66813
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---------------------------------------ATGCTCGGCCTCCGCGTCCTCTGCGGCGCGCCACCGGCCAC
CGCCTCGGCACCGCCGCCGAGGGGCCGCTGCAGCGCGCCGGAGAAGAGCGGCCGGGCGCACCTGCTGGGCGTCCCCGCGG
CCGTCTCCCTCTCGCTCGTCCTCTGGTCCACCCCAGGTAGAGTGCAAACTCTTCACACAT------AGTCACGCATGTTT
CCATTCCACGCACGGCAATGGGCAAC---------ACCGTTGAAATTCGTGTGCGAACTTGCAGTGAGCGCCGGCATCCT
GTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCCCGGCTCGAGTTCCTGGACAAATGGAATGGTTGGT
TCAGCTAGCTGCTTGCTCTACGCTATCTCATCTAGT--------------------------------TCTAGATACATC
CATTTTCGAGACAAGTAATTCCGAACGGAGGGAGTATATGAGAATCCTTTTCTTTTTGCTCAGTATG---------TTTA
TTCATCTCTCCTTGATTTGCACTGGATTTATTCTGAAGCGGAGAACCAGAGGAAGTACGCCGAGAATGACTCGAGGTTCA
AGTCCTCCAAGGTGCTCAAGGAGCTGCTCGAGAAGTCCAAGCAGAACAAAGAAAAGTATGTGATGCCATGGGCTGATTTT
GAAGCTCTAGCTGCCGTTCTTTTCCTCTTGTACTTGTGTGATAGCTTTGGTGCCACGTTCATGTGATGAGCCTCTCTTGG
GCGAAAAAATGGCATTGCTTTCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGGGCGCCGAGTGGGGCGTCG
GCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACGGAGCTCAGGAAAAGAGTTGGGGAATGA
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>chr4D_1_TraesCS4D01G251900
GAACCTCCAAAAACCACCATCTTCTTGGCTTGGGCCTCTTACCATGCAACATGCATTTTGACTCTGATTCAAGAACTGAT
CCACAAAAAGATGGATCCACCATAGTGTCAGGTGTTTGCTGCAAGCATTGTAGCCCACACATCACAGGATATGAGCAGA-
CGAGCCAAATTAAAAGTTAAATAAAAAAATCCCCAATTTTGCAAGACCTAACTCTAACCCTAATTTAGAACCGGTACTAT
GGAGTGTGGACTTACAAAGAGCTCGGCTTCCATGCCAATCATGGAGATGTTGTCGTCCGAGCTCTCCTCTCCGTCCCTCC
AGGAAGGCATTCTCAACGCCGATGAGCAAGAACGGTGGCGGCAGTAGCGGCAGCGTGGTCAGAAAAGAAGGAGAGAGAGA
TTGAGTTG------------------------------------------------------------------------
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------------------------------------------------AGCAGAGAGAGTGAGTGCGAGTGGGGAGAGAG
CGAGCTGGTCGTGCCTTTTTGACCAGCACCAGACATGGTCCCACCTAGCCGCGCCGGTCGGCCGTTAGGTCAATGCTGAC
ACATCACCTAACGTGTGGCCCCACTTGTCATAATCAGGCTTAAAACATCCGAATCAGCCACTTTCCTGACTTGGTAGGTT
TTTGTCAAGGATTAT-GTTTTTTTTTATTTTTTGC---------ATAGTGGTAGTTTTCAGCTA--GGGTTTAATGGAAA
GTGGTAGTTTTTTTTATGTTAAATACTCGTCACTTTAGGCTGGACCAGGCTCCAAACGTATCGTTTGATCGCCGCTGCAA
GACTC----ACATCTACTCCTACTGAAGAAAAAGATCCGAAGGGCAATCTCCGGGATCACCCCCATCGTTAGTGGCTGAC
AAGAGAACAGGTAGTGAGAGTGGCGCCCACCCTTCCCCAATCCCCCCACCCGCAACCTCCTCACTCGA----------CA
GAGTAGCTCAACGGCTCATCCATCCATCCATC--------CTCTCGCCTACGTTGAGG----CCACCAGCACGAGCAAGA
AACCACTGAACACTAGCGAGGCAGCCAGGCCAAAGCACCATGCTCGGCCTCCGCGTCCTCTGCGGCGCGCCACCGGCCAC
CGCCTCGGCACCGCCGCCGAGGGGCCGCTGCAGCGCGCCGGAGAAGAGCGGCCGGGCGCACCTGCTGGGCGTCCCCGCGG
CCGTCTCCCTCTCGCTCGTCCTCTGGTCCACCCCAGGTAGAGTGCAAACTCTTCACACAT------AGTCACGCATGTTT
CCATTCCACGCACGGCAATGGGCAAC---------ACCGTTGAAATTCGTGTGCGAACTTGCAGTGAGCGCCGGCATCCT
GTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCCCGGCTCGAGTTCCTGGACAAATGGAATGGTTGGT
TCAGCTAGCTGCTTGCTCTACGCTATCTCATCTAGT--------------------------------TCTAGATACATC
CATTTTCGAGACAAGTAATTCCGAACGGAGGGAGTATATGAGAATCCTTTTCTTTTTGCTCAGTATG---------TTTA
TTCATCTCTCCTTGATTTGCACTGGATTTATTCTGAAGCGGAGAACCAGAGGAAGTACGCCGAGAATGACTCGAGGTTCA
AGTCCTCCAAGGTGCTCAAGGAGCTGCTCGAGAAGTCCAAGCAGAACAAAGAAAAGTATGTGATGCCATGGGCTGATTTT
GAAGCTCTAGCTGCCGTTCTTTTCCTCTTGTACTTGTGTGATAGCTTTGGTGCCACGTTCATGTGATGAGCCTCTCTTGG
GCGAAAAAATGGCATTGCTTTCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGGGCGCCGAGTGGGGCGTCG
GCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACGGAGCTCAGGAAAAGAGTTGGGGAATGA
TCAGACCACGCTGCAGCATCCGACTCAATTGCTCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAACAGTTGGCAAATACACAATCTAGTTCAGAACCG-----------------------
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-------------------------------------------------------------------CAGATGGTTTAAA
AAGGTGAATGGGAATTGTGGCCTCTTGTTCTGTCAGTAGTACTCCATGCGAATTTTAAATTTTCTCCGTCAGTTCTTGAA
CCACAGCGGCCTGTTACTGTTAGTGTAAGT----CTTACCATCACCAAA-CCATAAGGAAAAGTAACTGGTGGCGCACTT
CGATAGCTCAAACATCCATTTGAATACCGACGGATATGAATCTGAATTGACAGATCGTCAGATTGCTCAACACAAGAGAT
GAGCATACAACCGATATTCTCCCTGTACAGAAATCAAACTGCACATGAATAAAACCATCACAGAGGGCGCATCTGAAAAG
GAAGTTGATCAAACGAAGCGATCGATCGATCTTTTCATTAGCCAAAGAGTAATACAGATAATCATATTCCTTGAAGCTAG
AAACTCAACTTCAAGATTCTTAAACCCTAATACATCTAACGTGAAAGTTTTCCAT-
>chr4B_1
GAACCTCCAAAAACCACCATATTCTTGGCTTGGGCCTCTTGCCATGCAACATGCATTTTGACTCTGATTCAAGAACTGAT
CCACAGAAAGATGGATCCACCACAGTGTCAGGTGTTTGCTGCAAGCATTGTAGCACACACATCATACGATATGAGCAGAT
CGAGCCAAGTTAAAAGTAAAATAAAAAAT--CCCAACTTTGCAAGACCTAACCCTAACCCTAATTTAGAACCAGCATTGT
GGAGTGTGGACTTACAAAGAGCTTGGCTTCCATGCCAACCATGGAGATGTTGTCACCCGAGCTCTCCTCTTCGTCCCTCC
AGGAAGCCATTCTCAACGCCGACGAGTAAGAATGATGGCGGCGGCAGCGGCGGCAAGGTCG---AAAAAGGAGAGAGAGA
GAGAGAGAGAGAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCAGAGAGAGTGAGTGCGAGTGGGGAGAGAG
CAAGCTGGTCGTGCCTTTTTGACCAGCACCCGACACGGTCCGACCGAGCCGCGCCGGTCGGCCGTTAGGTCAATGCTGAA
ACATCACCTAATGTGTGGCCCCACTTGTCATAATCAGGCTTAAAACATCCGAATCGATCACTTTTCTGACTTGGTAGTTT
TTTGTCACGGATTATAGTTTTTTTTTAGTTTTTTGCTAATTTTTATAGTGGTAGTTTTCAGCTATAGGGTTGAATGGAAA
GTGGTAGT-TTTTTTATGTTAAATACTCGTCACTTTAGGCTGGACCAGGCTCCAAACGTATCGTTTGATCGCCGCTGCAA
GACTC----ACATACACA------CAAGAAAAAGATCCGAAGGGCAATCTCCGAGATCAGCCCCATCGTTAGTGGCTGAC
AAGAGAACAGGTAGTGAGAGTGGCGCCCACCCTTCCCCAATCC-CCCACCCGCAACCTCCTCACTCGACCAGGTCACTCA
GAGAAGCTCAACGGCTCATCCATCCATCCATCCATCCCGTCTCTCGCCTACGTTG----AGCCCACCAGCACGAGCAAGA
AACCACTGAACACTAGCGGGGC--------------ACCATGCTCGGCATCCGCATCCTCTGCGGCGCGCCACCGGCCAC
CGCCTCGGCACCGCCGCCGAGGGGCCGCTGCAGCGCGCCGGAGAAGAGCGGCCGGGCGTTCCTGCTGGGCGTCCCCGCGG
CCGTCTCCCTCTCGCTCGTCCTCTGGTCCACCCCAGGTAGAGTGCAAATTCTTCACACATAGACATAGTCACGTATGTTT
CCATTCCACGCACGGCAATGGCCAACAGGCCCAACACCGTTGAAATTCGTGTGCGGACTTGCAGTGAGCGCCGGCATCCT
GTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCCCGGCTCGAGTTCCTGGACAAATGGAATGGTT-GG
TCAGCGAGCTACTCTCTCCGTTCCAAATTACTCGTCGCTGAAATGGATGTATCTAGAATTTAAATACATCTAGATACATC
CATACGTGCGACAAGTAATTCGGAACGGAGGGAGTACCTGCTCTACACTATCTCATCTCATACAGTAGTATATCAACTTA
TTTATTTTCCATTAATTTGCACTGAATGAATTCTGAAGCGGAGAACCAGAGGAAGTACGCGGAGAATGACTCGAGGTTCA
AGTCCTCCAAGGTGCTCAAGGAGCTGCTCGAGAGGTCCAAGCAGAACAAAGAAAAGTATGTGATGCCATGGCCAGATTTT
GAAGCTCTAGCCGCCGTTCTTCTCCTCTTGTACTTGTGTGATAGCTTTGGTGCCACGTTCATGTGATGAGCCTCTCTTGG
GCGAAAATTTGCCATTGCTCTCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGGGCGCCGAGTGGGGCGTCG
GCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACGGAGCTCAAGAAGAGAGTTGGGGAATGA
ACAGACCACGCTGCAGCATCCGACTCAATTGCTCGCCGGAAACAGAGTTCTGGCACTGCGGAGCTGCTTCTTGCCACAGC
GGCAGGATGTCGTGGTAGCATAGTT---ACTAGAGAAAGAGAGATTTGATTTGAGTGGGAAATG----------------
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----------------------AACAGTGGGCAAACACACAATCTAGTTCAGAATTGCAGAGAATGGCGTTTTGGCTCTC
GGCCTTGATGGAGGCCGATTTTTTGAAAAAATTCAAATTCAAAAATTTCGGTTTCAAAAAAATATGACAAAAATTGTACC
AAGTAAACAACAATGTGAAGCATATGTGTGTAAAATTTCAGGATGAAATAGTTGAAATGCGACATGTACAAAAATGACAA
CATGATCTGGGAGGATGAATAGTATCACGTTTTATTAAGCCCCAAATTTGTCTTTTCTGCACAACCCCCATTTCATCGTA
TTTCATTCTGAAAATTTACACGGTTGTACACTATGCCTTCATCTATCTCTATATTTTTTCACATGATTTTTTACATGTAA
AAATATGAATTTTCAAGAATTTTGAATTTTGCATTTGGAGGCCTCCAAAAGCAATTTCCAAGAATTACAGATGGTTTAAA
AAGGACAATGGGAATAGTGGCTTCTTGTTCTATCAGTAGTACTCCATGCGAAATTTGAATTTTCTGCGTCAGTTCTTGAA
CCACAACTGTCTGTTACTGTTAGTGCAAGCCTCACTTACCATCAACAAA-TCGTAAGCAAAAATAACTGGTGGCGCATTT
CGATAGTTCAAGAATCCATTTGAATACCAACGGATATGAAACTCAATTGATAGAGCATCAGATTGCTCAACACAAGAGAT
GAGCATACAACCGACATTCTCCCTGTACCAAAATCAAACTGCACAAGAATAAAACCATAACAGAGAGCACATCTGAAAAG
GAAGTTGATCAAACGAAGCGATCGATCGATCTTTTCATTAGCCGAAGAGTAATACAGATAATCATATTCCTCGAAGCTAG
AAACTCAACTTCAAGATTCTTAAACCCTAATACATCTAACGTGAAAAGTTTCCAT-
>chr4A_717
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-------------------------------------------------CTCCGAGCGTATCGTTTGATCGCCGCTGCAA
GACTCGCATACATACACA------GAAGAAAAAGATCCAAAGGGCAATCTCCGGGATCACCCCCATCGTTCGTGGCTGAC
AAGAGAACAGGTAGTGAGAGTGGCGCCCACCCTTCCCCAATCCGCCCACCAGCAACCTCCCAC---------GTCAGTCA
GAGTAGCTCAACGGCTCATCCATCCATTCATC--------CTCTCGCCTACGTTGAGGCAGCCCACCAGCACGAGCAAGA
AACCACTGAACACTAGCGAGGC--------------GCCATGCTCGGCCTCTGCGTCCTCTGCGGCGCGCCACCGGCCAC
CGTCTCGGCACCGCCGCCGAGAGCCCGCTGCAGCGCGCCGGAGAAGAGCGGCCGGGCGTTCCTCCTGGGCGTCCCTGCGG
CCGTCTCGCTCTCGCTCGCCCTCTGGTCCACCCCAGGTAGAGTGCAAATTCCTCACACAGTCAA----TCACGTATGTTT
CCATTCCACGTACGACAACGGCCAACA---------CCGTTGAAATTTGTGTGCGGACTTGCAGTGAGCGCCGGCATCCT
GTCAGGGTCCACCGGGCTGGAGTCGGTTCCAGCGCCCCCGATGCCCCGGCTCGAGTTCCTGGACAAATGGAATGGTTGGT
TCAGCTAGCTAATAGCTCTACACTATCTCATCTAATACA-----------------------------------------
----------------------------------------------------------------------TATCAATTTA
TTTATTTTCCGTTAATTTGCACTGAATGAATTCTGAAGCGGAGAACCAGAGGAAGTACGCGGAGAATGACTCGAGGTTCA
AGTCCTCCAAGGTGCTCAAGGAGCTGCTGGAGAAGTCCAAGCAGAACAAACAGAAGTATGTGCTCGTGCTCACGTCTGTT
TGCTCACTCCTGTGCTGGAACCAAGCTCTCTAACTGACTCC--------GTCCCATGTTCATGTGATCAATCTCTTTCGG
GGCAAAATTTGTTGTTGATATCAGGAACGAGAGGGAGATCCAGGACAAGTACTGCCTGCGGGGCGCCGAGTGGGGCGTCG
GCGACTGCTCCACGGTGGGGATGACGGACCAGGAGAAGGAGGACTTCATCACAGAGCTCAGGAAAAGAGTTGGGGAATGA
ACGGACCACGCTGCAGCATCCGACTCAATTGCTCGCCAGAAACAGAGTTCTGGCACTGCAGAGCTGCTTCTTGCCACAGC
GGCAGGATGTAGTGGTAGCATAGTTATTACTAGAGAAAGAGAGATTTGATCTGAGGGGGGGATG----------------
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----------------------AACAGTTGGCAAATACACAATCTAGTTCAGAACAGCT---------------------
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---------------------------------------------------------------------GATGGTTTAAA
AAGGTCAATGGGAATAGTGGCCTCTTGTTATGTCAGTAGTACTCCATGCGAAATTTGAATTTTCTCCGTCAGTTA-----
---------------ACTGTTAGTGTAAGC----CTTACCACCAACAAACCCATAAGGAAAAGTAACTGGTGGCGCACTT
CGATAGTTCAAAAATCCATTTGAATACCGACGGATATGAAACTCGATTGACAGAGCATCAGATTGCTCAACACAAGAGAT
GAGCATACAACCGACATTCTCCCTGTACCAAAATCAAACTGCACGTGAGTAAAACCATCACAGAGAGCACGTCTGAAAAG
GAAGTTGATCAAACGAAG----CGATCGATCTTTTCATTAGCCGAAGAGTAATACAGATAATCATATTCCTCGAAGCTAG
AAACTCAACTTCAAGATTCTTAAACCCTAATACATCTAACGTGAAAAGTTTTCCAT
>SNPs
--------------------S-------------------S---------------------------------------
-----S----------------S-------------------------------S---------S-S-------------
--------S--------S----------SSS-----S---------------S-------------------S-S-S-S-
-----------------------S--------------S---------------SS--------------S---------
------S---------------S---S-----S-S-------S-S------S--SS----SSSS--S-------------
SS---SSS------------------------------------------------------------------------
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-S----------------------------S----S-----S---S---------------------------------S
-----------S-------------------------------------------SSS------S------------S--
-------S-------------------S-----SS------------------------------------S--------
--------S-----------------------------------------------------------------------
-------------SS--SSSSSSS--------------------------------------------------------
-------------------------------------------S------------------------------------
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----------------------SSSSSSSSSSSSSS--------------------------------------------
----------------------------------------------------------SS--------------------
------------------------------------------------S------------------------S------
---------------------S---------------------------------S------------------------
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----------S--S-------S------------S---------------------------------------------
---SSSS-S------------S--------------SS--SSSSS-SS-S---SS-SS-SS-SSS-S-------------
--S--S-SS-S--S----------S--SS-------------------------------S-------------------
-----------------------------------------------------------------------S-S------
-----------S---------S----------------------------------------------------------
-------SS--S-------S------------------------------------------------------------
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S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS---------------------------------S------------------------
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-----S---------S------------------------------------S---S-----------------------
-----S-S-S-------------------S--------------S-----------------------------------
------S-----S---------------------------S--S----------S-S-----------------------
--------------S-------------SS-----------------------------------S--S-----------
-------------------------------------------S---------------------------S--------
----------------------------------------------SS--------
>forward_1303
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---CACTGAACACTAGCGAGGCA---------------------------------------------------------
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>reverse_3216
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---------------TGTGGCCTCTTGTTCTGTCA---------------------------------------------
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