>input_sequence_66812
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---------------------------------------------------ACACTACTACAGCAAGCAACAACCAGTCA
AGAAGAGCAGAAAACCAAC-CACACATGCTTGCTCCTAGTGCTGAGGAGCAACATATCAACAAGAAGTGCAGAAACAATG
AGACCAGGGGCAGGTTTCAATGCGACGGCGGCAGCAACAAAGGCTGCGGTAGCCCCTCTGGCCGCCGGCGCCGCGCACTC
CGCGTGGCACTCGCCGGTGCCGTACCTCTTCGGTGGCCTGGCCGCGATGCTGGGACTCATCGCCTTCGCCCTTCTCATCC
TCGCCTGCTCGTACTGGAAGCTGTCCGGGTACCTGGAGGGCAGCGCCGGCCGCGGTGACGCCGAAGGTTCCGCCACCGAC
GGCGCCAAGCCGGTGGCCTCGGACCTGGCGCCAGCAGCGTGGGAGGAGAAAGTACTGGTGGTCATGGCCGGGGACGTGGA
GCCGACGTACCTGGCCACGCCCATGTCAAGCAGAGACCGTAGCGGCAAGGGAGGAGAGGAAGAGAAGAAGGTGTCCATGG
TCGCCATGGCTAGCACCAAGGATGCTGGTAATGGTGAGCACAGTCAGAACCAGAGAGAACGAGACGACCACCACTTCCCC
GAGGTGTGAGTTTTGCAT---------CCTGTTCCTTTTTAGGCTTAGGTGAGCTGGCAGTGAAGCCTTTTGATTCTTCC
-----AAATAGGAGAAAGTTCATCTGCAGTTCTGGACTATGCAGGGAGAGCGTAACCCCG-----ATCAGAGCCATGTTT
TTCGTGGGGTTCTTCAGTTTTTGCAATGACCAAATCGATTAGATCAGCAATCAAGGTCATGTTTTTGCGGATTTATCTCT
AACTTTTGCTATAACGGGAGTGGAATTAGAGCATGAGAAATGCAGCTTTTGATACC------------------------
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>chr4D_1_TraesCS4D01G079800
CCCGTTATCAATGACATCCAATGTCCATAGTCAGGAAACCATGATTATCTGTTGATCAACGAGCTAGTCAACTAGAGGCT
TACTAGGGACACGTTGTAGTCTATGTATTCACACATGTATTACGATTTCCGGATAACACAATTATAGCATGAACAATAGA
CAATTATCATAAACAAGGAAATATAATAATAACCATTTTATTATTGCCTCTAGGGCATATTTCCAACAGTAGCCATGGGC
AGCCCGACCCGGACAACCCGACCCGAAAAAGCCCGATCTGACCTGGCCTGACGTTGCTCACGGGCCAGACTTGGGCCTAG
ATATTGAGCCCGAAAGCCGAGCCGGACCGGGCCCGAGCCCGCCATATTTGTGATTCAACGAAGAGGCCCGACCCGAGGCC
CGACGGGCTTTTACACTAGCGAGCAGGGCTTGGGGCTTGATTTCTAGGCCTGACGCCTGGGCTGGGCTGGGCCCAGGCCT
GGGTTTTCTCCGTTGGGCTTGGTTAGGCCCGGCCCGAGGGATGGCCGGGTATAGCCACAACTAACTACTTTGTACACGTG
AACAACCTGTGGTTGGATGGTTAGAAGGACTGTGGTATTCCCAGTCCATCAGGGTTCAAGTCCTAGTGCTCGCATTTATT
CCTGGATTTATTTCAGGATTTCCGGCGATGTGCATTCAGTGGGAGGAGACGTTCCCGTCGACGAGAGGTGCCTAGGTGAC
TTCGTAGGCTCAGTCTTTCGGAGGTGCTCATAAGGGTAGGGTGTACGTGTGTACGTTCATATGGGTGAGTGTATGCGCGT
GTATATAAGCGCTTGCGTCTGTACTGTTTTAAAAAAACTACTTTGTACACAGGGACAGGGGTGCCACGTCAAATGGTCGA
CACATAATTATATCTCATCTAGATTTGTTTC-AGCGCTTCCTTTAGCAAATCTAC---------GGCAAATTCGTCCCCT
TTTTCCCTTTCCCTCCTTATAAATGA-CCTCTAACGCTTCACTACGCTCCCACACTACTACAGCAAGCAACAACCAGTCA
AGAAGAGCAGAAAACCAAC-CACACATGCTTGCTCCTAGTGCTGAGGAGCAACATATCAACAAGAAGTGCAGAAACAATG
AGACCAGGGGCAGGTTTCAATGCGACGGCGGCAGCAACAAAGGCTGCGGTAGCCCCTCTGGCCGCCGGCGCCGCGCACTC
CGCGTGGCACTCGCCGGTGCCGTACCTCTTCGGTGGCCTGGCCGCGATGCTGGGACTCATCGCCTTCGCCCTTCTCATCC
TCGCCTGCTCGTACTGGAAGCTGTCCGGGTACCTGGAGGGCAGCGCCGGCCGCGGTGACGCCGAAGGTTCCGCCACCGAC
GGCGCCAAGCCGGTGGCCTCGGACCTGGCGCCAGCAGCGTGGGAGGAGAAAGTACTGGTGGTCATGGCCGGGGACGTGGA
GCCGACGTACCTGGCCACGCCCATGTCAAGCAGAGACCGTAGCGGCAAGGGAGGAGAGGAAGAGAAGAAGGTGTCCATGG
TCGCCATGGCTAGCACCAAGGATGCTGGTAATGGTGAGCACAGTCAGAACCAGAGAGAACGAGACGACCACCACTTCCCC
GAGGTGTGAGTTTTGCAT---------CCTGTTCCTTTTTAGGCTTAGGTGAGCTGGCAGTGAAGCCTTTTGATTCTTCC
-----AAATAGGAGAAAGTTCATCTGCAGTTCTGGACTATGCAGGGAGAGCGTAACCCCG-----ATCAGAGCCATGTTT
TTCGTGGGGTTCTTCAGTTTTTGCAATGACCAAATCGATTAGATCAGCAATCAAGGTCATGTTTTTGCGGATTTATCTCT
AACTTTTGCTATAACGGGAGTGGAATTAGAGCATGAGAAATGCAGCTTTTGATACCAAGCTTTTTGTTACCTGAGAAATA
GTTGGTGCTCTATTTCCTTTCCTGTTGTTTTCTTGCTCTGAGTAATGGAAATGAGCATATTTTTCTTCTTTCTCCCCCTG
CTTTCTATCGTGGCCAATAGGCCCCGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGGAGGAATCAGCAGG
TAGGGCACACACATGGCATGTA---CGTATGAGTAAACCAAGGGCAAAGTGGATGGGAATGAATCGTTCGTTTCAGGCAG
GACAGGACGCGGTGCGTCGATGGGCATACTTCTCATGATTGCGAATATATGATGTGATCAGGGGGGTG------------
-CTCTCAGGAGAGGAGACTTGCTTGAGCTGCTTGTTCCCTTGTGGGCTTGTGGCTAATATTGTTTTCAGGATATCCTGAG
TCAGCCAAACCTGGGAGACAGGGTCTAGTGAGCAGATTCTTGAAGACGATGTAAGACATCCTCCATGATGTGAACTGTTG
ACCTGCACGCATCACTAGGAGTC--TAGGATGAATGTATGCTGCTATCACCAATGGTATGATTAGTGCTTGGAACGGTAC
CTTGGCGCCCAGACCAAACCACGTCTACAAAAGTTTGAAACGGCCGCCGGCCGAAGAGGTACGGCACCGGCGAGTGCCAC
TAC--------GCTCCCCAAACCCTTCTTA---------GCGGACGGCCAAGTTATTGACCGGTCATAAAATTCCGACTC
AGACGGACTCCTCAAACCGGTCCTATATGTCCACGTTGGCCGGCACCCCTCATATCCGGTCCAAATCTGAGATAGGTATA
GGAAGGTCCGGAGGCGTCCGCCACGTCAGATCCAATAGGTAGGACGCATCATATTTGCATCAAATTG-----GTCCACCA
AATCCACAAGACCACAACCCTCCTTCCTCGTTCATTTTTCACGCCCTAGCCATCACCACCATCCACCCTTGCTCCCCCAT
CCACGCCGCCACCCCACCCGCCGCCCTAGATGTCATCGTCGGGTACCCCGTCCACC
>chr4A_836
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-----------------------------------AACTATTTTGTACACAAGGACAGGTG----ACGTCAGGTGGTCGA
GACATAATTATATCACATCTAGATGACTTTGAAGCGCTTACTTTAGCAAATTCATCCTTGCTATGGCAAATTCGTCCCCT
TTTTCCCTTTCCCTCCTTATAAATGACCCCCTAACGCTTCAGTACGCTCCCACACTATTACACCAAGCAACAACCAGTCA
AGAACAGCAGAAAACCAACTCACACATACTTGCTCCCAGTACTGAGGAGCAACATATCAACAAGAAGTGCAGAAACAATG
AGACCAGGGGCAGGTTTCAATGCGACGGCGGCAGCAACGAAGGCTGCGGTAGCCCCTCTGGCCGCCGGCGCCGCGCACTC
CGCGTGGCACTCGCCGGTGCCGTACCTCTTCGGTGGCCTGGCCGCGATGCTCGGACTCATCGCCTTCGCCCTTCTCATCC
TCGCCTGCTCGTACTGGAAGCTGTCCGGGTACCTGGAGGGCAGCGCCGGCCGCGGCCACGACGAAGGTTCCGCCACCGAC
GGCGCCAAGCTGGTGGCCTCGGACCAGGCGCCAGCAGCGTGGGAGGAGAAAGTACTGGTGGTCATGGCCGGGGACGTGGA
GCCGACGTACCTGGCCACGCCCATGTCAAGCAGAGACCGTAGCAGCAAGGGAGAAGAGGAGGAGAAGAAGGTGTCTGTGG
TCGCCATGGCTAGCATCAAGGATGCTGGTAATGGTGAGCACAGTCGGAACCAGA--------------------------
----TGTGAGTTTTGCATCCTGTAACTCCTGTTCCTTTTTAGGCTTAGGTGAGCTGGCCGTGGAGCCTTTTGATTCTTCC
AAACAAAATAGGAGAAAGTTCATCTACAGTTCTGGACTATGCAGGGAGAGCGTAACCCCG-----A-----GCCATGTTT
TTCGTGGGGTTCTTCAATTTTTGCAATGACCAACTGGACTAGATCAGCAATCAAGGTTATGTTTT---------------
-------------------GTGGGATTACGGCATGAGAAATGCAGGTTTTGATA---AGCTTTTTGTCACCTGAGAAATA
GTTGGTGCTCTGTTTCCTTTCCTTTTGTTTTCTTGCTCTGAGTAATGGAAATGAGCATATTTTTCTTCTTTCTCCCCATG
CTCTCTATCGTGGCCAATAGGCCCCGTGTGTG------------------------------TGTGGAGGAATCAGCAGG
TAGGGCACACACATGGCATGTACTACGTATGAGTAAACCAAAGGCAAAGTGGATGGGAATGAATCGTTCGTTTCAGGCAG
GACAGGACGCGGTGCGTCGATGGGCATACTTCTCATGATTGCGAATATATGATGTGATCAGAGGGAT-------------
ACTCTCAGGAGAGGAGACTTGCTTGAGCTGCTTGTTTCCTTGTGGGCTTGTGGCCAATATTGTTTCCAGGATATCCAGAG
TCAGCCAAACCTGGGAGACAGGGTGTAGTGAGCAGATTCTTGAAGACGATGTAAGACATCCTCCATGATGTGAACTGTTG
ACCTGCACGTATCACTAGGAGTCTATAGGATGAATGTATGCTGCTATCACCAACGGTATAATTAGTGCTTGGAACGGTAG
CATGGCGACCAGACCAAACCACGTCTACAGAAGTTTGAAACGGCCGCCGGTGGCCGGAGGTATGCTGATTCTATTAGAGC
ATCTACAGCCGGCTCCACAAACCCTTCTTATACGCCCCGGCGGACGGCCAAGTTACTGACCGGTCATAAAATCTTGACTT
AGACAAACTCCTTAAACCGGCCTTATACGTCCA-------------------------GTTCAAATCTAAGGCAGATATA
GGAAGGTCTGGACGCGTCTGCCACGTCGGATCCGATAGGTAGGACCCATCATATTTGCACAAAATTGATCAAGTCCACCA
AATCCACG--------ACCCTCCTCCCTCGTTCATTTTTCGCGCCCT-----------------------GCTCCCCCAT
CCA-----------------------------------------------------
>chr4B_982
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--------------------------------AACGCTTCGCTACGCTCCCACACCGTTACGCCAAGCAACAACCAGTCA
AGAACAGCACAAAACCAACTCACACATACTTGCTCCCAGTGCTGAGGAGTAACATATCGACAAGAAGTGCAGAAACAATG
AGACCAGGAGCAGGTTTCAATGCGACGGCGGCAGCAACGAACGCTGCGGTAGCTCCTCTGGCCGCCGGCGCCGCGCACTC
CGCGTGGCACTCGCCGGTGCCGTACCTCTTCGGTGGCCTGGCCCCGATGCTCGGACTCATCGCCTTCGCCCTTCTCATCC
TCGCCTGCTCGTACTGGAAGCTGTCCGGGTACCTGGAGGGCAGCGCCGGCCGCGGTGACGAGGAAGGTTCCGCCACCGAC
GGCGCCAAGCCGGTGGCGTCGGACCTGCCACCAGCAGCGTGGGAGGAGAAAGTACTGGTGGTCATGGCCGGCGACGTGAA
GCCGACGTACCTGGCCACGCCCATGTCAAGCAGAGACCGTAGCAGCAAGGGAGAAGAGGAAGAGAAGAAGGTGTCCATGG
CCGCCATGGCTAGCACCAAGGATGCTGGTAATAGTGAGCACAGTCAGAATCGGAGAGAACGAGATGACCACCACCTCCCC
TAGGTGTGAGTTTTGCAC---------CCTGTTCCTTTTTAGGCTTAGGTGAGCTGGCGGTGAAGCCTTTTGATTCTTCC
-----AAATAGGAGAAAGTTCATCTGCAGTTCTGGACTATGCAGGGAGAGCGTAACCCCGGTCAGA-----GCCATGTTT
TTCGTGGGGTTCTTCAATTTTCGCAATGACCAAATGGATTAGATCGGCAATCAAGGTCATGTTTTTGTGGATTTATCTCT
AACTTTTCCCATAATGGGAGTGGAATTACAGCATGAGAAATGCAGCTTTTGATA---ATCTTTTTGTCGCCTGAGAAATA
GTTGGTGCTCTATTTCCTTTCCTTTTGTTTTCTTGCCTTGAGTAATGGAAATGGGCATATTTTTCTTCTTTCTTCCCTTC
CTTTCTATCGTGGCCAATAGACCCCGTGTGTG------------------------------TGTGTAGGAATCAGCAGG
TAGGGCACACACTTCGCATGTA-------TGAGCAAATCAAGGGCAAAGTGGATGGGAGTTAATCGTTTCC----GGCAG
GACAGGACGCGGTGCGTCGATGGGCATACTTCTCATGATTGCGAATATATGATAGGATCAGCCGATCAGGGGGTACTCTC
ACTCTCAGGAGAGGAGACTTGCTTGCGCTGTTTGTTTCCT--------TGTGGCCAATATTGTTTTCAGGATATCCAGAG
TCAGCCAATCTTGGGAGACAGGGCCTAGTGAGCAGATTCTTGAAGACGATGTAAGACATCCTCCATGATGTGAACTGTTG
ACCTGCACCAGTCACTAGGAGTC--TAGGATGAATGTATGCTGCTATCACCAGGGGTATGATTAGTGCTTGGAACGATAC
CTTGGCGCCCAGACCAAACCACGTCTACAAAAGTTTGAAACGGCCGCCGG------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----------S-------S-SSSS------SS-------
S-------------S---------SSS---S--------S-----------SS-S-------------------------
-----------------------------S---------------------------S----S-----------------
----S----------------------S--------S-------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------S----------------------------
------------------------------------------------------------S-------------------
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-------------------------------------------S---------S--------------------------
----------------------------------------------------------------S---------S-----
S---------------------------------------------------------S---------------------
------------------------------------------------------------------SSSSS---------
----------------S------------------S-------------------------------S------------
-------S-S----S-------------S-------------------------SSS----------S------------
-----------------------S-----------------------------------------------------S--
--------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
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-------------------------------------------------------------S---S-S------------
------------------------------------S-----------------S---------------------S---
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---------S-------------------------------------------S--------------------------
--------------------------------------------------SS-SS-SS-SSSS--SSSSS-S-S-SSSS-
SS--------------S--------------------------------------S----------------SSS----S
----SS------S-------S-S----S-----SSSSSSSSSSSSSSSSSSSSSSSSS--S-------S--SS--S----
--------S---S-----S--------S-----S-----------S-------------SS-------------------
-------SSSSSSSSS--------S---------------S------SSSSSSSSSSSSSSSSSSSSSSS----------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_286
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--------------------------AAAAGCCCGATCTGACCTGG----------------------------------
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>reverse_2049
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------------------------------------------------TGTGTGTGTGTGTGTGTGGA------------
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