>input_sequence_66793
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---------------ATGCCGGTGAGCAGGATCGCCATCGGCGCCCCGGGGGAGCTGTCCCACCCGGACACCTTCCGCGC
CGGCGTCGCCGAGTTCATCTCCATGCTCATCTTCGTCTTCGCCGGCTCAGGCTCCGGCATGGCCTTCGGTAAGGCCCACC
CCCATTTCTTTCTTCCTTTCCTGGTGCATCGACCGATCATCATGTCATCCATCAA----------GTGCTGATCGCCGGT
TTTGCATGGCGTGCCGTACTGGCAGGCAAGCTGACTGACGGCGGTGCGACGACGCCGGCGGGGCTGATCGCGGCGGCGCT
GGCGCACGCGTTCGCGCTCTTCGTGGCCGTCTCCGTGGGCGCCAACATCTCGGGCGGCCACGTGAACCCGGCCGTCACAT
TCGGCGCCTTCGTGGGCGGCAACATCAGCCTCCTCAAGGCGGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTG
GCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCGTGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAA
CGCCGTGGTCTTCGAGATCGTCATGACCTTCGGCCTCGTCTACACCGTCTACGCCACCGCCGTCGACCCCAAGCGCGGCG
ACCTCGGGGTCATCGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCC
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCGTGGTCAGCGGCGTCTGGGAGAACCACTGGGTGTACTGGCTCGGCCC
CTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATCTGCTTCATCGGCCAGCGCCCACACGAGCAGCTCCCCACCG
CCGACTACTGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------
>chr3D_1_TraesCS3D01G540900
CTTATTGGAGGGGCCTAACCTTGTCGATGACAACGATACATTTTTCATGCATGTGCTCCTAAGGGCCAGCGCCCAGAGTG
GTAGTCATCATCGTTGAACCATTTCTAATTAATGTTTACCATCCGGTCATGCGACAGTTAATAGGCATTAATTAGACAAA
AAATTATTTTACGGGCATTGCGCTAGTTGGCATCCATCTTCTTTGTTTCCAGTTGGACAAGTCTTAACCTTCCGTTCAGG
CTCATCACAATGGGAGGTATCATATACTAGTATCATGTACTATATGATACTAGTGTATGATATTATATCCATAGTGCATA
ATATTATAGCTTGTTATTATAATGGCCTCATTTATTGTTATGCATAACACATACTACTACATCATTTACCATGACATGAT
ATCATATCATGATACTA----------------------------------TCTATGATAGTCCCATTATGACCGGCATC
GTTCATCCTCATGACTGTCCTGCTTGAGTTTGCGGGTGTGGTGTGATTATTTGTCTATTTTAATCTAAAGGTGCCATTTT
TTCCTATTTTGGAAGGTCGATTTTGAGATGTAAAAGTAAAAAAAAAAGTTTCCTAAA------CAAAGAAGAGTTGAGCC
CTATTTTTGCCACTGCAGACATAACCAAATTT-CTCAAACTTTTGGCTG-CCAAAAGAAACCAAGCCCGTGATGGATCTA
GATAGCTCAGCGTTT-CCTTTTTGTTCGTGATAAAATTAAATACCCTATGGATGGCGCAGAAGAA-AAAAGAATGGTTAG
GGGTGTGTGCAATCTGATCCCAATCCCAACCCCAATGGCGATGGCAGGCGATGATTGTGTTGAAGCGGTCGTGTAGTGAC
CGGCCGTAGCAAGTTGCCCGCCCAGCCTCACATCCATT-CCGGGCTATATATAACCAACACTGCATGATCGACACACCAT
C-----ACCACACCACACAATTCAACACTAGCTAGCTGCACAGGACAGGAGCCGATCCATTCATCCCGAA---AA--AAA
GAGCGCCCGTCGAAAATGCCGGTGAGCAGGATCGCCATCGGCGCCCCGGGGGAGCTGTCCCACCCGGACACCTTCCGCGC
CGGCGTCGCCGAGTTCATCTCCATGCTCATCTTCGTCTTCGCCGGCTCAGGCTCCGGCATGGCCTTCGGTAAGGCCCACC
CCCATTTCTTTCTTCCTTTCCTGGTGCATCGACCGATCATCATGTCATCCATCAA----------GTGCTGATCGCCGGT
TTTGCATGGCGTGCCGTACTGGCAGGCAAGCTGACTGACGGCGGTGCGACGACGCCGGCGGGGCTGATCGCGGCGGCGCT
GGCGCACGCGTTCGCGCTCTTCGTGGCCGTCTCCGTGGGCGCCAACATCTCGGGCGGCCACGTGAACCCGGCCGTCACAT
TCGGCGCCTTCGTGGGCGGCAACATCAGCCTCCTCAAGGCGGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTG
GCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCGTGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAA
CGCCGTGGTCTTCGAGATCGTCATGACCTTCGGCCTCGTCTACACCGTCTACGCCACCGCCGTCGACCCCAAGCGCGGCG
ACCTCGGGGTCATCGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCC
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCGTGGTCAGCGGCGTCTGGGAGAACCACTGGGTGTACTGGCTCGGCCC
CTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATCTGCTTCATCGGCCAGCGCCCACACGAGCAGCTCCCCACCG
CCGACTACTGAAAATATCAATCCGAATCCCATCCATCAGTCATCGCCATGAGAGACTGAAATTGCTTCAAGAATCAAGCA
GGTGTTATCGTG---------TCATCAGTAAGCCCGTTTAGTTTCATCGTCTCTCTCTCT--------TGTCTTTGAGAA
ATTCAGGGTAAACAGTGAGTC--AGTCAGTCAGTCAGGAATAATCTC---------TTGTCTTGG----TGTACGTACGT
CCTCAATTATGAATGCTTCTATTCCATGGTCAAGATTGATGTTTGTACAAATGTATT-GTCTCTCCTAGCAACTTGATGT
CTTGCCAATCTCGTGTCCA-TTTTTTCTGTACATACTCTGGATTTTGTCCTGTCCATATTTTCTAAAAAAAAAACGACAT
A---------------ATATGTATGGTAAGCATTGTTGATTGTGATGGATGCGAAGAAATTGACAGTTCGATTGCGTA--
CGATCGAATTAA----------TTTCACATATTGTATGGTGTCACTTGTGAGTATGAATGATTGCAAAATGACAAAACGA
AAAGACAATGACTAAAATGAGATTCCCAACTAGGC------------------CACCCAAAATATGTTTAATCGAAGTCG
CCTTTCTAGCCGTTAGATCTCCATCCAACCCTCTAAATGGTACTCACAGCTCACACATTAACACACCACGCACCCCACCC
TGTCC----CATTCTTAGTCTTCCC--------TCCTTCCTTCTTTCACCTCTGGGGTGAC-------------------
--------------------------------------------------------------------------------
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---TCTACGGAATCACTTCTTCTCCGACAAACTTGTTATTTGTCTTCATCGATGGTA-GCAAGCTGGTTT-GACAACACA
CATTGTAAAGCACTAATCG----AGAGCTTTGCCACAAAGTGTGACCTGCTTACTAGCAATGTTAACTGGCTTCACTAGA
GCGCGGCATGAAGTGTTTCCATAGTTTAGCCAACGTGTCAAGTCGGTGATGGTGAGGGCTATGGTTTGACCGGAGTGCTT
ACGTCTTGAAGCGTCATGCTACATAGGTCCACGCCTTTGCAAGCTTAGTAGGTGGTGAGGATGATGGAAACCGTTGTGAA
GCCCCAACTT
>chr3A_1
CTTATCGGAGGGGCCTAACCTTGTCGATGACAACCATGCATTTTTCATGCATGTGCTTCTAAGGGCCAGTGCCCAGAGTG
GTAGTCATCATCGTTGAACCCTTTCTAATTAATGTTTACCATCCGGTCATGTCACAGGTAATAAGGATTAATTAGACAAA
AAGTTATTTTACGGGCATTGCGCTAGTTGGCGTCCATCTTCTTTGTTTCCACTTGGGCAATCCTTAAACTTCCTTTCAGG
CTAGTCACAATGGGAGGTATGATATACTAGTATCATGTACTATATGATATTAGTGTATGATATTATATCCACAGTGCATA
GCATCGTAACTTGTTATCATAGTGACCTCATTTATTGTCATGCATGACACATGCTACTACATCATTTACCATGATATGAT
ATCATATCATGATACTTAATCCTCACATTTCTCATTTAATTGTGTGCCACCTCAGTAAAAATGCCAAGTTGACTAGCCTC
ATTCCTCCTCATGGCTCCCCTGCTTGAGTTTGCCGGTGTGGTGTGTTTATTTCTCTATTTCAATCTAAAGGTGCCATTTT
TTTG-ATTTTGGAAGATCGA-TTTGAGAGGTAAAAGAGAAAGAAAAACCTTTTT--------------------------
---TTTTTGCCCCTGCTTACATAACCATATTT-CTCAAATGATTTGCTGCCCAAAAGAAACCAAGCCCGTGATGGATCTA
GATAGCTCAGCGCTT-CCTTTTTGTTCGTGATAAAATTAAATACCCTATGGATGGCGCAGAAGAAAAAAAGAATGGTTAG
GGGTGTGTGCAATCTGATCCCAATCCTAATCCCAATGGCGATGGCAGGC-------------AAGCGGTCGTGTCGTGAC
CGGCCGTAGCAAGTTGCCCGGCCGGCCTCACATCCATTCCCGGGCTATATATAACTAACACTGCATGATCGA--------
--------CACACCACACAATTCAACACT-GCTAGCTACACAGCACACGAACCGATCCATCCATCCAGAAAAAAAAGAAA
GAGTGCCCGTCGAAAATGCCGGTGAGCAGGATCGCCATCGGCGCCCCGGGGGAGCTGTCCCACCCGGACACCTTCCGCGC
CGGCGTCGCCGAGTTCATCTCCATGCTCATCTTCGTCTTCGCCGGCTCAGGCTCCGGCATGGCCTTCGGTAAGTCCTATC
CCCATTTCTTTCTCCCTTTTCTGCTGCATCGACCGATCATCATGTCATCACTCATCAATCACGCCGTACTGATCGCCTGT
TGTGCATGGCG--------TGGCAGGCAAGCTGACTGACGGCGGCGCGACGACGCCGGCGGGGCTTATCGCGGCGGCGCT
GGCGCACGCGTTCGCGCTCTTCGTGGCCGTCTCCGTGGGCGCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTCACAT
TCGGCGCCTTCGTGGGCGGCAACATCAGCCTGCTCAAGGCCGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTG
GCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCGTGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAA
CGCCGTGGTGTTCGAGATCGTCATGACCTTCGGGCTCGTCTACACGGTGTACGCCACCGCGGTCGACCCCAAGCGCGGCG
ACCTCGGGGTGATCGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCC
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCTGTCGTCAGCGGCGTCTGGGAGAACCACTGGGTCTACTGGCTCGGCCC
CTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATCTGCTTCATCGGCCAGCGCCCCCACGAGCAGCTCCCCACCG
CCGACTACTGAAAACCTCAATCTC-ATCTCGTCCATCCGTCATCGCCATGAGAGATTGAAATCGCTTCAAA-AATTCCAG
CAAGTGTACGTCGTCGCGTCATCATCAGTAAGCCAGTTTAGTTTCATTGCG---CTATCT--------TGTCCTTGAGAA
ATTCAGGGTAAACAGTGTGTGCGAGTCAGTCAGTCAGGAATAATCTCATCCTTCTCTTATCTTGGTGTATGTATGTACGT
CCTCAATTATGAATGCTTCTATTCCATGGTCAAGATTGATGTTTGTACAAATGTATTTGTCTCTCCTAGCAACTTGATGT
CTTGCCAATCTTGTGTCCATTTTTTTCTGTACATACTCTGGATTTTGTCCTGTC-------------------ACGACAT
A---------------ATAT---TGGTAAGCATTGTTGATTGTGATGGATGCAAAGAAATTGATAGTTCGATTGCGTATA
CGATCGAATTAA----------TTTCACAGATTGTATGGTGTGACTTGTGAGTATGAATGATTGCAAAATGCCAAAAGGA
AAAGACAATGACAGATGTGAGATTCCCAACTAGGCCAGGGTTTATAGCACACCCACCCAAAATATGTTCAATCAAAGTCG
CCTTTCTAGCCGTTAGATCTCGATCCAACCCTCTAAACGGGACTCACAACTCACACCTTAATACACCACGCACCC-ACCC
TGTGCGTCACATTCTTATT----------------CTTCCTTCTTTCACCTCTGGGGCGAC-------------------
--------------------------------------------------------------------------------
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---TCTACGGAATCACTTCTTCTCCGAGAAACTTGTTATTTGTCTTCATCGATGGTA-GCAAGCTGGTTT-GACAACACA
CATTGTAAAGCACTAATCG----AGAGCTTTGCCACAAAGTGTGACTTGCTTACTAGCAATGTTAACTGGCTTCACTAGA
GCGTGACATGAAGTGTTTCCATAGTTTAGCCAACGTGTCAAGTCGGTGACGGTGAGGGCCATGGTTTGACCGGAGTGCGT
ATGTCTTGAAGCGTCATGCCACATAGGTCCACGCCTTTGCAAGCTTAGTAGGTGGTGAGGATGATGGATACAATTGTGAA
GCCCCAAGTT
>chr3B_534
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------TTTGGAATATCTTTTTTGAGAGGTAAAAGTGAAAAATTAAATCCAAAAGACCAAACCAAACAAGAATTGAACC
CTATTTTTGCCCCTGCTGACATAGCCATATTTTCTCAAATTATTTGCTGCCGAAAAGAAACCAAGCCCGTGATCGATGTA
GCTAGCTCAGCATTGCCCTTTTTGTTCGTGATAGAATTAAATAGCCTATGGATGGCGCAGAAGAAAAAAAGAATGGTTAG
GGGTGTGTGCAGTCTGATCCCAATCCCAATCCCAATCCCAAAT---GGCAATGGTTGTGTTGAAGCGGTCGTGTCGTGAC
CGCCCGTAGCAAGTTGCCCGGCCGGCCTCACATCCATTCCCGGGCTATATATAACCAACACTGCATGATCGACACACCAT
CACCACACCACACCACACAATTCAACACTAGCTAGCTGCACAGGACACGAGCCGATCCATCCATCCAGAA---AAAAAAA
GAGTGCCCGTCGAAAATGCCGGTGAGCAGGATCGCCATCGGCGCCCCGGGGGAGCTGTCCCACCCGGACACCTTCCGCGC
CGGCGTCGCCGAGTTCATCTCCATGCTCATCTTCGTCTTCGCCGGCTCAGGCTCCGGCATGGCCTTCGGTAAGGCCCACC
CCCATTTCTTTCTCCCTTTCCTGGTGCATCGACCGGTCATCGTGTCATCATTCACGCCGTACTGAT--CTGATCGCCGGT
TGTGC-------------CTGGCAGGCAAGCTGACTGACGGCGGCGCGACGACGCCGGCGGGGCTGATCGCGGCGGCGCT
GGCGCACGCGTTCGCGCTCTTCGTGGCCGTGTCCGTGGGCGCCAACATCTCGGGCGGGCACGTGAACCCGGCCGTCACAT
TCGGCGCCTTCGTGGGCGGCAACATCAGCCTGCTCAAGGCGGTGGTGTACTGGGTGGCGCAGCTGCTCGGCTCCGTCGTG
GCCTGCCTCCTCCTCAAGATCGCCACCGGCGGCGAGGCCGTGGGCGCCTTCTCGCTCTCCGCCGGCGTCGGCGTCTGGAA
CGCCGTGGTCTTCGAGATCGTCATGACCTTCGGGCTCGTCTACACGGTGTACGCCACGGCGGTCGACCCCAAGCGCGGCG
ACCTCGGGGTCATCGCGCCCATCGCCATCGGCTTCATCGTCGGCGCCAACATCCTCGCCGGCGGCGCCTTCGACGGCGCC
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCTGTCGTCACCGGCGTCTGGGAGAACCACTGGGTGTACTGGCTCGGCCC
CTTCGCCGGCGCCGCCATCGCCGCCCTCGTCTACGACATCTGCTTCATCGGCCAGCGGCCCCACGAGCAGCTCCCCACCG
CCGACTACTGAAAACCTCACTCTCAATCTCATCCATCCATCACCGCCATGAGAGATTGAAATCGATTCAAAAAATTCCAG
CAAGTGTACGTCGTCGTGTCATCATCAGTAAGCCAGTTTAGTTTCATTCTCTCTCCCTCTCTCTCACGTGTCTTTGAGAA
ATTCAGGGTAAACAGTGT----GAGTCAGTCAGTCAGGAATAATCTC---------TTGTCTTGG--------TGTATGT
CCTCAATTATGAATGCTTCTATTCCATGGTCAAGATTGATGTTTGTACAAAGGTATT-GTCTGTCCTGGCAACTTGATGT
CTTGCCAATCTTGTGTCCA-TATTTTCTGTA---------GATTTTGTCCTGTC-------------------ACGACAT
G---------------ATATGTATGGTAAGCATTGGTGATTGTGATGGATGGGAAGAAATTGACAGTTCAATTGCGTA--
CAATCGAATTAA----------TTTCACATATTCTATGGTGTGACTTGTGGGTATCAATGATTGAAAAATGCCAAAACGA
AAAGACAATGACTAAAATGAGATTCCCAACCAGGC------------------CACCCAAAATATGTTTAGCCAAAGTCG
CCTTTCTAGCCGTTAGATCTTGATCCAACCCTCTAAACGGGAGTCACATCTCACAC-TTAACACACCACGCACCCCACCC
TGTGTGTCACATTCTTATTCTTCCATTTTTTTAGAACGAAGGCTCGCGAAGAGCTCGGCTTTGAATTAACAAAGCCATCA
ACCGGCCATGAATTACAACAAACAACCCAACCTACAACGGTCAGAATGATACAACGGGGAACACTGGAAAGCCTACTCAC
TACAACCTCCACAAGCCGCAATTGTAGCTAGTAAAGGCCGAGCAGTCCACACTAGGATCATAAGTAGCAGAAACGGAGCA
GCATACAGCAGGACATAGCCGACCTTCGAGGATGGACCGTGCTCCAGGAACACCTAGAGAAGAAAGGAACCAACATCTTC
CCTCTCAATCACCGAAGAGGGACCCTTCCCCCTCGCCATGGCTCGTAGGCGCCGCACCGTCGGGATTTCGAGAAGCTCAC
CCTAGAGCTGGAAGATGGTCGCCCTCGCATCGCAAGGTGGACATAGGATGACCACGTCGATTTGGGATATATCTCGCCGG
CTGCTCTGCCACAGTCCATGCCCAACTAGTTGGAGACAAGCTTCAAGGAAATCGGATGATGCAGAGGGGTAGCTCAATCC
CTCACCTGCATAACCTCCCGACCGAGCCCCGCACCCTTGATGACGCCTCCAGCAAGGTCACGACGCGCAAGGCGCCGCCG
CCGCCAAATCCGCCGAGGATAAAGGTTTTCACCCGGGCAGGGGGATCGGGGTGGAGAGCAGAGGACATCGGCTGCGCCCC
CATGGAGGAAAGCAGCGCCCTTGGGCGTTGCCGCCGCCGGGCCGGCCGGACCGGCCAAGGTTTCCCCCGGTTCCCTAGCT
GACCACCAACTCACACCAACGTCGGAGCCAGAAAACGCTAGCCCACACCAGAGGCGAGAGCGAGGCAGCAGGGAAAAGGG
ATTTCTATGGAATCTCTTCTTCTCCGATAAGCCTGTTATTTGTCTTCATCGATATATGACCATTTGGTTTGGACAATGCA
CATTGTGAAGCACTAATCG----AGAACTTTGCCACAGTGA--GACCTGTTTACTAGCAATGTTAACTGGCTTCACTAGA
GCGCGGCATGAAGTGTTTCCATAGTTTAGCCAATGTGTCAAGTCGGTGATGGTGAGGGCCATGGTTTGACCGGAGTGCTT
ATGTTTTGAAGCGTCATGTCACATAGGTCCATGCCTTTGCAAGGTTAGTAGGTGGTGAGGATGATGGATACCGTTGTGAA
GTCCCGACTT
>chr4D_1237
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---------------------GCAGGCAAGCTGAGCCCCGACGGCGCGGCGACCCCGGCCGGCCTGATCTCGGCGGCGAT
AGCGCACGCCTTCGCGCTGTTCGTGGCGGTGTCCGTGGGCGCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCT
TCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGGCCTGCTCTACTGGGTCGCCCAGCTCCTGGGCTCCACCGCC
GCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCACCGGCACCTTCGGGCTGA---CCGGCATCGGCGCGTGGGA
GGCGGTGGTGCTGGAGATCGTGATGACCTTCGGGCTGGTGTACACGGTGTACGCCACGGCCGTGGACCCCAAGAAGGGCA
GCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGTGGGCGCCAACATCCTGGTCGGCGGCGCCTTCTCCGGCGCG
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCAGCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCC
CCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTGCTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCA
CCGACTACT-----------------------------------------------------------------------
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>chr4B_1237
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---------------------GCAGGCAAGCTGAGCCCCGACGGCGCGGCGACCCCCGCCGGCCTGATCTCGGCGGCGAT
AGCGCACGCCTTCGCCCTGTTCGTGGCGGTGTCCGTGGGCGCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCT
TCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGGCCTGCTCTACTGGATCGCCCAGCTCCTGGGCTCCACCGCC
GCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCACCGGCACCTTCGGGCTGA---CCGGCATCGGCGCGTGGGA
GGCGGTGGTGCTGGAGATCGTCATGACCTTCGGGCTGGTGTACACGGTGTACGCCACCGCCGTGGACCCCAAGAAGGGCA
GCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGTGGGCGCCAACATCCTGGTCGGCGGCGCCTTCTCCGGCGCG
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCAGCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCC
CCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTGCTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCA
CCGACTACT-----------------------------------------------------------------------
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>chr4A_1237
--------------------------------------------------------------------------------
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---------------------GCAGGCAAGCTGAGCCCCGACGGCGCGGCGACCCCCGCCGGCCTCATCTCGGCGGCGAT
AGCCCACGCCTTCGCGCTGTTCGTGGCGGTGTCCGTGGGCGCCAACATCTCCGGCGGGCACGTGAACCCGGCCGTGACCT
TCGGCGCCTTCGTGGGCGGCAACATCACCCTCTTCCGCGGCCTGCTCTACTGGATCGCGCAGCTGCTGGGCTCCACCGCC
GCCTGCTTCCTCCTCCGCTTCTCCACCGGCGGGCTCCCCACCGGCACCTTCGGGCTGAGT---GGCATCGGCGCGTGGGA
GGCGGTGGTGCTGGAGATCGTGATGACCTTCGGGCTGGTGTACACGGTGTACGCCACGGCCGTGGACCCCAAGAAGGGCA
GCCTGGGCACCATCGCGCCCATCGCCATCGGCTTCATCGTGGGCGCCAACATCCTGGTGGGCGGCGCCTTCTCCGGCGCG
TCCATGAACCCCGCCGTCTCCTTCGGCCCCGCCCTCGTCAGCTGGGAGTGGGGGTACCAGTGGGTGTACTGGGTCGGCCC
CCTCATCGGCGGCGGCCTCGCCGGCGTCATCTACGAGCTGCTCTTCATCTCC---CGCACCCACGAGCAGCTCCCCACCA
CCGACTACTGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_1844
--------------------------------------------------------------------------------
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--------------------------------------------------------------------AGTTCTCCACCG
CCGACTACTGAAAACCTCAATCTCA------TCCATCCATCATCGCCATGAGAGATTGAAATCGCTTCAAA-AATCCGAG
CAAGTGTAAGTCGTCGTGTCATCATCAGTAAGCCAGTGTAGTC----TCTCTCTCTCTCTCTCTCGCTCGTCTTTGAGAA
ATTCA-GGTAAATAGTGT----GAGTCGGCCAGTCAGGAATAATCTCATCTTTCTCTTATCTTGG----CGTATGTACGT
CCTCAATTATGAATGCTTTTATTCCATGGTCAAGATTGATGTTTGTACAAATGCATT-GTCTGTCCTAGCAACTTGATGT
CCTGCCTATCTTGTGTCCA-TATTTTCTATACATACTCTGGATTTTGTCCTGTC-------------------ATGACAT
AGTACTCCCTCCGTTTATATGTATGGTAAGCATTGTTGATTATGATGGATGCGAAGAAATTGACCGTTCGATTGCGGA--
CGATCGAATTACAACCGAATAGTTTTACAGATTCTATGGTGTGACTTGTGAGTACGAATGATTGCAAAATGCCAAAATGA
AAAGATAATGACTAAAATAAGATTCCCAACTAGGACAGGGTCTATAGCACAGGCACCCAAAATATGTTAAATCAAAGTCG
ACTTTCTAGCCATTATATCTTGATCCAACCCTCTAAACGGGAGTCACAGCTCACACCTTAACACACCACGCACCCCACCC
CGTGTGTCACATTCTTATTCTTCCTTCCTTCCTTCCTTCCTTCTTTCACCTCTGGGGCAAC-------------------
--------------------------------------------------------------------------------
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---TCTATGGAATCTCTTCTTCTCCGACAAGCATGTTGTTTGTCTTCATCGATGGATGGCAAGCTGGTTTGGACAATGCA
CATTGTGAAGCACTAATTAATCAAGAACTTTGCCACAAAGTGTGACCTGCTTACTAGCAATGTTAACTGGCTTCATTAGA
GCACGGCATGAAGTGTTTCCATAGTTTAGCCAATATGTCAAGTCGGTGATGGTGAGGGCTATGGTTTGACCGGAGTGCTT
ATGTCTTGAAGCGTCATGTCACATAGGTCCATGCCTTTGCAAGCTTAATAGGTGGTGAGGATGATGGATATAGTTGTGAA
GCCCCAACTT
>SNPs
-----S----------------------------S--S-------------------S-----------S----------
--------------------S------------------------------SS----S-----S-S--------------
--S----------------------------S-------------------S----S---SS-----S-----S------
--SS----------------S----------------------------S---------------------S--------
SS--SS--S--------S---S--S-------------S------S------S---------------------S-----
----------------S------------------------------------SS-S-S-S-S---SSS----SS--S--
S---S--------S--SS---------------S-----------S------S-------S-------------------
--SSS----------S------------S--------S---------S---SS--S-----------S----S----S--
-----------S----S----------S-----------S-S--S-----------------------------------
--------------------------------------------------------------------------------
-----------------------------S-------------------S---S--------------------S-----
--------------------S--S--------------------------------------------------------
-----------------------------------------------S------------S-----S-------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------S-----------------------------------SS---S------------S------------
-S---------SSSSSSS--------------------------S-----------------------------------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------S-----------S--S-------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------------------------------------------------------S-------------------
--------------SS------SS----S--------S-----------------S------S-------S--SSSS-SS
SSS--SSS---S----------------------S------------S--------------------------------
-----------------S--S----------------------------------------------------S------
--------------------------------------------------------------------------------
-----------S------------------------------------------SSSSSSSSSSSSSSSSSSS-------
--------------------------------------------------------------------------------
------------------------------------------S----------------------------S--------
-------------------------------------------------------------------------S------
---------------------S---------------S--S---------------S-----------------------
---S-------------S------S--------------------------------S----------------------
--------------------------------------------------------------------------------
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-S-----------------S------------------------------------------------S-----------
----------
>forward_481
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-------------------------------------------------------------TCCCATTATGACCGGCATC
G-------------------------------------------------------------------------------
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>reverse_1949
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----------------------------CCATCCATCAGTCATCGCCA--------------------------------
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