>input_sequence_66790
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----------------------------------------------------------ATGAGGGTAAGATCTTAGTGCC
AC---CTGGTT-------------------AAATTCGGTTT---------------------------------------
------------------------------------TGTTTCTTCCTGCTGTCAG-TATTAGAACTAGTTTCATGGACTG
A----AACTTTTGCAGACGGAGATGGTCATCAGGATCCAGATCAGCTCTGAGAAGGGCCATTCCAAGGCTATCAAGGTGG
CTGCTGCGGTCACCGGTAAATCCCTAGCTCCATAACACCTCTCTTACCTTCGCCTCTCAATCCTCAAGATTTGTCACGAA
CTAGCACGTTTGATGGCTAATTATTACTACCGCCGTATCAAAATATAAGACATTTTGAGGCTAAACTATAACTTAAATCT
CGTGTTGTTTGCACGGTT-----CATGGATGCACGTTGACTTAATTTTGCGTGAACCGAGCAGGGGTGGAGTCTGTCACG
ATCGCCGGCGAGGACAAGAACCTGCTGCTGGTCATCGGCGCCGGGGTCGACTCCAACCGCCTCACCGAGAAGCTGCGCCG
GAAGGTGGGCCACGCGGAGGTGGTGGAGCTGCGCACCGTCGACGACGACGACTTCGCCGGCGAGTACCACCCGTACCGCT
ACCACCCGAGCCCGAGCCCGTACAAGCATGTGACCGCGCGCGACATGTACTACACGGGGAGCTACCCGCCGCAGCAGCAC
TCCGGGAGCGGTCGGGACCACTACCACAACGCCGGCTCGTACCCTCCGACAACGGGCGGGCGAGACTACTACAGCTACGG
CGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCGGCTACCCGGCACAGTACCAGCAGCAGGGTTACTACTACCCGCAGCAGC
CGGCGGCGAACACGCACACGGTGGTGCACCATGGGTACTCGGATGACGCCAACAGCTGCTCCATCATGTAG---------
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--
>chr2A_1_TraesCS2A01G333000
AACTTTTGCAGCATCACTTGCCACGTTACGAAGTGACCGTAGGCGCCTCGTCGTCGACGGGAACGTCTCCTCCCACTGAA
AGCGTATCGCCGGAAATCCTGAAATAAATCCAGGAATAATGCGAGCATCAGGATTTGAACCCTGGTGGGTTGGGGATACC
ACTGTCCCCCTAACCAACTCAACCACAGGTTGATTCGCTACATGCCCCGGAATTAACTATAGATTGATCGTGTCCCACTC
CCCTAGCTACCATGTGTCGGTCTCAGCCGGCTCAGTCTCCACTCTCCAGCTCACCCTCGCACTCGCCACCGATCCCCATC
TCACTGTCACACATGGCAGCACTGCC-AATCCCAGCCACCCGTTACACTCACTAGTTACTATAACCGCCCCCGATAACTC
TGCATGGCTATTAAAACAGTATCAGAGGCACGTAAGTCCTACCCGGCCAAAATTTTCCGTTCTTCCCGTTTCTTTTCGGG
GAATGACGCGTCCAAACCCGCCGCTCACGCGTCGATGTGATGCGATCATGCGTACAAGTGGCATTCGATTGCGTGGGCGC
ACGAGTTATCTACGGTAGCCGAGTCAGTGAGTCGCT-----------ACGACATGTCGACATGTCCAGTCAGGGACGCGA
GGTCTCCCTAAATAAACCGTTGGTGTCGCTCTCGATCCACAAAGCGC-AGTGATATTTTCTCAGAAGGAAAAATGAGGGT
GTT--GGCTGTTGGGATATGCTTCGGGGCCCCGACGACTTGGC-GGTGAGGTCAATGCGGGC-TGATTATCTTGCTAATA
GCCGTTCAATCAAGGTTGGTTTCCCCGCCAAAAATAATAATAATCAGGGTCGGTTTGTGCGTGTATATA-AAGTCACTAC
TGTGTTATCACACAGGGTACAAGCCTCCTGCATAACAGCGTAAGCTAGCTTAGCAAGTTGCCAAGGGCTGGTAGAGCTGG
TGCTTGCTTAGTACTACTAAGTTCTACTTTGCTCATCGGAGGACTACCGACGGGGAAGATGAGGGTAAGATCTTAGTGCC
AC---CTGGTT-------------------AAATTCGGTTT---------------------------------------
------------------------------------TGTTTCTTCCTGCTGTCAG-TATTAGAACTAGTTTCATGGACTG
A----AACTTTTGCAGACGGAGATGGTCATCAGGATCCAGATCAGCTCTGAGAAGGGCCATTCCAAGGCTATCAAGGTGG
CTGCTGCGGTCACCGGTAAATCCCTAGCTCCATAACACCTCTCTTACCTTCGCCTCTCAATCCTCAAGATTTGTCACGAA
CTAGCACGTTTGATGGCTAATTATTACTACCGCCGTATCAAAATATAAGACATTTTGAGGCTAAACTATAACTTAAATCT
CGTGTTGTTTGCACGGTT-----CATGGATGCACGTTGACTTAATTTTGCGTGAACCGAGCAGGGGTGGAGTCTGTCACG
ATCGCCGGCGAGGACAAGAACCTGCTGCTGGTCATCGGCGCCGGGGTCGACTCCAACCGCCTCACCGAGAAGCTGCGCCG
GAAGGTGGGCCACGCGGAGGTGGTGGAGCTGCGCACCGTCGACGACGACGACTTCGCCGGCGAGTACCACCCGTACCGCT
ACCACCCGAGCCCGAGCCCGTACAAGCATGTGACCGCGCGCGACATGTACTACACGGGGAGCTACCCGCCGCAGCAGCAC
TCCGGGAGCGGTCGGGACCACTACCACAACGCCGGCTCGTACCCTCCGACAACGGGCGGGCGAGACTACTACAGCTACGG
CGGCGGCGGCGGCGGCGGCGGTGGCGGTGGCGGCTACCCGGCACAGTACCAGCAGCAGGGTTACTACTACCCGCAGCAGC
CGGCGGCGAACACGCACACGGTGGTGCACCATGGGTACTCGGATGACGCCAACAGCTGCTCCATCATGTAGCAGCAGCAA
------------------------------------TGAGAATCGATGGATGGTGTCTGCGCCAGTTAC-TTCCGATTCC
ATGTAATTACTGTACATAGGACAAACACGGCAAGCTGTGTGCGTTTCTT-TTTTTCTTTTCCTTTC-TTTTTCCCGATGA
AGCTGTGTGCGTTTCATGGTTGTGTTGTGTGAATATGTATGTAGCTCCAGGCATTACATCTACGTACGGTGTGGAATGTA
AGCTAAGTTCTACTCTCTTATTAAAACAGGGGGAAGCAGAATCCGAAAGGG----AAAAAAGTAAACACAGTACAATTTG
CAATTGTTTACATAGACGCAGATACACTCATCACTATGAATACTCATACGCACACCCTTATAAATATGTTCGAGATATTG
AGTCGGCACAACATCTTAACATAAACGAAGTCACTGCAGGCGCCAAAGTTCCCTACCTCTCTGCCTCCACCTAGCTTGCC
GTTCACTGTTCTCCTACCCCACCCACCTTTTTGTCTGCCTATCTTTTGATT--------GACACCACCAATTCAAGTTTC
TCGCACTAGTAAATGAATGCCTAGTAGTGGCATATGCCAAAAACATCATTGGTGGCGTGTTGCCCCCATGCCACTAATAT
AGTGCTATTGACAAATGTTACTAGTGGCGTGATGCCCCCATGGCACCAGTAACATAAATAGTAGTAGCGGGCCAGGTATA
GCACACCACCAGTAGTATATAAATGATTGACAGAAGATCGAGCAGCTGCACATGCAATAGGGAAACAAGTAGAGGCGATG
GTTTGGGCAACGGGTGATAGCAAGCACCACAGCGGTGTGATGTCATGGTGGAACTGATAGAGGCGAGGGTGTCCCGATCT
TTCGATGAGATGATAACTATCGATTTGGTGGAGGCGACTTTGACGATCCGACTACAAACGTGAATGACGTTGCGCCTTAG
CAATCGCTAAATCAATCTCTCGAGGTTACTGACGATGCTGGAAGCACGATCAGCCTGACCACGAAGGTCTATTCCTGCAC
GC
>chr2B_199
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--------------------------------------TACATGCCCGGGAATTAAAGAT---TTAATCGCGTCCAATTC
ACCTAGCTACCATGTGTCGATCTCAGCCGGCCCAGTCTCCACTCTCCAGCTCACCCTCGC------CACCGATCACCATC
TCACTGTCACACATGGCAGCACTGCCCAATCCCAGCCACCCGTTACACTCACTAGTTACTATAACCGCTCCCGATCGCTC
AGCACGACTACTAAAACCGTATCAGAGGCACGTAAGTCCTACCCGGCCAAAAATTTCCGTTCTTTCCGTTTCTTTTCGGG
GAATGACGCGTCCAAACCCGCCGTTCACGCGTCGATGTGATGCGATCATGCGTGCAAGTGGCATTCGTTTGCGTGGGTAG
GCGAATCATCTAGGGTGGCCGAGTCAGTAAGTCACTACCTGTTCGTAACGACATGTCGACATGTCGAGTCAGGGACGCGA
GGTCTACCTAAATAACCCGTTGGTGTCGCTCTCGATCTACAAAGCGTAAGGGATATTTTCACAAAAGAAAAGAAAGGAGA
GGGTG-------GGGATATGCTTCGGGGCCCCGACGACTTGGCCGGTGAAGTCAATGCAGCG-TGATTATCTTGCTAATT
GCCTTTCAATCAAGGCTGGTTTGCCCGCCAAAAAAAATAATAATGAAGGTCGGTTTGTGCGTGTATATATAAGTCACTAC
TGTGTTATCACACAGGGTACAAGCCTCCTGCATAACAGCATAAGCTAGCTTAGCAAGTTGCAAAGGGCTGGTAGAGCTGG
TTCTTGCTTAGTACTACTAAGTTCTACTGTGCTCATCGGAGGATTACCGACGGGGAAGATGAGGGTAAGATCTTAGTACC
ATCATCTGGTT-------------------AATTCCATCTTTTATTGTGTTCATGATTTGTGATGAATTAGTCCTCCATT
ACAAGAAAAAAGTTCTACTACTACTGTAGTTACGTATGTTTCTTCCTGCCGTCAGTTATTAGAACTAGTTTCATGGATTG
ATTGAATCCACTGCAGACGGAGATGGTCATCAAGATCCAGATCAGCTCTGAGAAGGGCCATTCCAAAGCTATCAAGGTGG
CTGCTGCGGTCACCGGTAAATTCCTTGCTCGACCC--CCTCCCTTAACTTCGCCTC--TGTCCTCAAGGCTTATCATGAA
CTGGCATGTTGCATATGGTTGTTTAAT-----------------------------------------TAGCTTATAATT
AAATCTAGTCACCGTTCATGATGCATGGATGCACGTTGACTTAGTTTTGCGTGAACCGAGCAGGCGTTGAGTCTGTCACG
ATCGCCGGCGAGGACAAGAACCTGCTGCTGGTGATCGGCGCCGGGGTCGACTCCAACCGCCTCACCGAGAAGCTGCGGCG
GAAGGTGGGCCACGCTGAGGTGGTGGAATTGCGCACCGTCGACGACGACGACTTCGCCGGCGAGTACCACCCGTACCGCT
ACCACCCGAGCCCGAGCCCGTACAAGCACGTGACCGCGCGCGACATGTACTACACGGGGAGCTACCCGCCGCAGCAGCAC
GCCGGGGGCGGTCGGGACCACTACCGCAACGCCGGCTCGTACCCTCCGACGACGGGCGGGCGAGACTACTACAGCTACGG
CGGCGGCGGCG------------GCGGTGGCGGCTACCCCGCGCAGTACCAGCAGCAGGGGTACTACTACCCGCAGCAGC
CGGCTGCGAACATGCACACGGTGGTGCACCATGGGTACTCGGATGACCCCAACAGCTGCTCCATCATGTAGCAGCAGCAA
------------------------------------TGAGAATCGATGGATGGTGTCTCCGCCAGTTACTTTCCGATTCC
ATGTAATTAGTGTACATAGTGCAAACTCGGCAAGCTGTGTGCGTTTCTT-TTC-TCCTTTCCTTTCTTTTTTTCCGATGA
AGCTGTGTGCGTTTCATGGTTGTGTTGTGTGAATATGTATGTAGCTCGAGGCATTACATCTACGTACGGTGTGGAATGTA
AGCTAAGTTCTACTCTCTTATTAAAACAGAGGGAAGCAGAATGTGAAAGGCAAAAAAAAAAGTAAACACGGTACAATT-G
CAAATGCTCACATAGGCGCGGATATACTCACCCCTATAAATAG----ACGCATACCCCCATAAGCACCTATGAGATACTA
AGTCGGCACAATATCTTGAGATAGACGAAGTCACCGCACGCGCCGAAGTTCCCTACCTCTCTGCCTCCACCTAGCTTGTC
GTTCGCTGTTCTCCTACTCCACCCACCTTTTTGCCCGCCTATCTTTTGATC--------GACACCACCAATTCAAGTTTC
TCGCATTAGTAA--------------------------------------------------------------------
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>chr2D_199
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--------------------------------------TACATGCCCCGGAATTAAAGATAGATTGATCTTGTCCCACTC
ACCTAGCTACCGTGTGTCGATCTCAGCCGGCCCGGTCTCCACTCTCCAGCTCACCCTCGC------CACCGATCCCCGTC
TCACTGTCACACATGGCAGCACTGCCCAATCCCAGCCATCCATTACACTCACTAGTTACTATAACCGCCCCCGATAGCTC
TGCACGACTACTAAAACAGTATCAGAGGCACGTAAGTCCTACCCGGCCAAAAATTTCCGTTCTTTCCGTTTCTTTTCGGG
-AATGACGCGTCCAAACCCGCCGTTCACGCGTCGATGTGATGCGATCATGGGTGCAAGTGGCATTCGCTTGCGTGGGTAG
GCGAATCATCTAGGGTGGCCGAGTCAGTAAGTCACTACCTGCTCGTAACGACATGTCGACATGTCGAGTCAGGGACGCGA
GGTCTCCGTAAATAATCCGTTGGTGTCGCTCTCGATCTACAAAGCGTAAGGGATATTTTCACAAAAGGGAAAAAGAAAAA
GAAAAGGTTGTAGTGATATACTTCGGGGCCCCGACGACTTGGCCGGTGAGGTCAATGGGGGGATGATTATCTTGCTAATA
GCCGTTCAATCAAGGTTGGTTTCCCCGCCAAAAATAATAATAATTAGGGTCGGTTTGTGCGTGTATATA-AAGTCACTAC
TGTGTTATCACACAGGGTACAAGCCTCCTGCATAACAGCATACGTTAGCTTAGCAACTTGCCAAGGGCTGGTAGAGCTGG
TTCTTGCTTAATAC------GTTCTACTTTGCTCACCGGAGGACTACCGACGGGGAAGATGAGGGTAAGATCTTAGTACC
ATGCTTCTGCTTAATTTCTACTATTAGCAAAATACCATCTTTTATT-TGTTCATGATTTATGATGAATTAGTCCTTCGTT
ACAAGAAAAAAAAAAGTGCTAC----TAGTTACATATGTTTCTTTCTGCCGTCAGTTATTAGAACTAGTTTCATGGATTG
A----ATCCATTGCAGACCGAGATGGTCATCAGGATCCAGATCGGCTCTGAGAAGGGCCATTCCAAAGCTATCAAGGTGG
CTGCTGCGGTCACCGGTAAATTCCTTGCTCGACCC--CCTCCCTTACCTTCGCCTCCGTGTCCTCAAGGCTTATCACTAA
CTGGCATGTTGCATATGGTTGTTTAAT-----------------------------------------TAGCTTAAATCT
GGTCACTGC------TCATGATGCATGGATGCACGTTGACTTAATTTTGCGTGAACTGGGCAGGGGTGGAGTCTGTCACG
ATCGCCGGCGAGGACAAGAACCTGCTGCTGGTGATCGGCGCCGGGGTCGACTCCAACCGCCTCACCGAGAAGCTGCGCCG
GAAGGTGGGCCACGCGGAGGTGGTGGAGCTGCGCACCGTCGACGACGACGACTTCGCCGGCGAGTACCACCCGTACCGCT
ACCACCCGAGCCCGAGCCCGTACAAGCACGTCACCGCGCGCGACATGTACTACACGGGGAGCTACCCGCCGCAGCAGCAC
GCCGGGGGCGGTCGGGACCACTACCGCAACGCCGGCTCGTACCCTCCGACGACGGGCGGGCGAGACTACTACAGCTACGG
CGGCGGCGGTG------------GCGGTGGCGGCTACCCCGCGCAGTACCAGCAGCAGGGTTACTACTACCCGCAGCAGT
CGGCGGCGAACATGCACACGGTGGTGCACCACGGGTACTCGGATGACCCCAACAGCTGCTCCATCATGTAGCGGCAGCAA
TGACCAGTGGACGTCTGAGCGTTTAGCGGGTCGGTTTGAGAATCGATGGATGGTGTGTGCGCCAGTTACTTTCCGATTCC
ATGTAATTAGTGTACAGA------------------GTGTGCGTTTCTTCTTC-TTTTTTCCTTTCTTTTTTCCCGATGA
AGCTGTGTTCGTTTCATGGTTGTGTTGTGTGAATATGTATGTAGCTCCAGGCATTACATCTACGCACGGTGTGGAATGTA
AGCTAAGTTCTACTCTCTTATTAAAACAGGGGAAAGCAGAATCCGA----------------------CAGTACAATT-G
CAAATGCTCACATAGACATGGATATACTCACCCCTATAAACACCCATGTGCATATCCCTGTAAACATTTCTGGGATATTG
AGTCGGCACAACATCTCAAGATTGACGAAGTCATCGCAAGCACCAAAGTTTCCTACCTCTCTGCCTCCACCTAGCTTGTG
GTTCGCTGTTCTCCTACTCCACCCACCTTTTTGCCCGCCTATCTTTTGATCGACACCACGAAACCACCAATTCAAGTTCC
TTACACGAGTACATGAATGCCTAGTAGTGTCAC--GCCAAAAACATCATTGGTGGC----TGCCCCCACGCCATTAATAT
AGCCCTATTGATAAATGTTATTAGTGACGTGATGCCTCCATGCCACCAGTAACATAAATA--------------------
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--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SS----------------------
S------------------S-----------S----------------------------SSSSSS--------------
----------------------------------------------------------------------------S---
----S-S---S-----------------------------------------S-----------S---------------
-----------------------S-----------------------------S-------------S---------SSS
S---S-S-----S---S-----------S----S-------------------------------S--------------
---------------S---------------------S--------S---S---------S--S---------S---S-S
-SS----S---S-------------------------------------------------S------------------
--------------------------------------------S-----------------------------------
---------------------------------------S----------------------------------------
-S---------------------------------------------------------------------------S--
-S------------------------------S-S-SSS-----------------------------------------
-------------------------------------------------S---------------------------S--
------S-SS--------------------------------------------------------S-------------
---------------------S---S----S-SSSSS----S--------------SSSS--------SS--S-------
--S---S---SS--SSSSSSS-S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------
S--SS-SS-SS-SSSSSS--------------------------------------------------------------
--------------------------------S-----------------------------------------------
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----------------------------S---------------------------------------------------
S-----S------------------S------------------------S-----------------------------
-----------SSSSSSSSSSSS----------------S--S-------------------------------------
------------S----------------------------------S--------------------------------
--------------------------------------------------------------------------------
---------S---------SS-----S-------------------------SS--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------S---------------------------S-
---S--S-S----------S----S-----S-S----S-----S--------S----S------S--S-SS---------
-------------------S---S----------S---S---------------------------------------S-
----S------------S---------------S-S--------------S-----------------------------
-----------------------------S--SSS---------------------SSSS--------S----S------
--SS-------S--------S-----S---------S-----S-----------------SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_102
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--CGTATCGCCGGAAATCCTGA----------------------------------------------------------
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--
>reverse_1454
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-------------CGGTTCATGGATGCACGTTG-----------------------------------------------
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--
>forward_178
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------------------------------------------------------------------------------CC
ACTGTCCCCCTAACCAAC--------------------------------------------------------------
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--
>reverse_2100
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-------------------GACAAACACGGCAAGCTGTG-----------------------------------------
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--
