>input_sequence_66754
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-------------------------------------------------------ATGTCAGGAGGTAGGCAGACATATT
GGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGGAAATGGAGTGTCCTTACTGTGATGCTGGCTTTGTGGCT
GAAATGGATGATGTCGATGCTCTCATGAGCCAGTTTGTTGGGATGTATAGTGATTTTCATCGTGACCCAAGGTTTGGGAT
CATGGAAGCAATGTCTACCGTGATGCGACATGGAATGGGGAGCATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCA
TATTATCTGACCTGGAGATGGAATTTGGTTCAGGGCCATGGTTGCTCTTCCGTGGCCAGCTCCCTGGTCATCTCTCAGAG
GCCAATAATGGTTTCGACGTTTTCGTCAATGGACGCCGTGGTGTTGGCACGCGGAGGGCAGATGTTGCAGATTACTTTGT
TGGGCCTGGATTAGAAGATCTAATTGAGCAGTTGACTCATAATGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCGA
TAGATGCCATGCCTAGTGTTAGGATCACTGCTAGGCATCTCACTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTT
GAACTGGAATCGGAAGCAAGAGAGATGCCATGCAAGCATTTATACCACTCTGATTGCATACTTCCTTGGCTAGAACAACA
CAATTCCTGTCCTGTTTGCCGATATGAGCTGCCAACACAGAGCTCTAGTGGTGCCAGCTGCTCACGCTCAAGATCAACCA
ACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGGAGAACCAGTGGGCGTCA---GAGAAGGAATCCGTTCTCGTTC
CTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGTTAG-----------------------------------
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>chr3B_1_TraesCS3B01G474100
ACCCGCCCCTTCCTCCTTGCAGAGTAAAGGAGGGGTTGGAGCGACTTGTCCCCCGAGGCCCCAAGGTAAAAGTCCAACCG
TATTGCCCTTGGATCTCTGCGTCTTGTTTAATTCTT---GTATGTGGCGAAGGTGCTTGACGTGAACGCCCACAAACAAA
CCTTTCTTGCATCAGCTGGGTCTCAGTTTCGTCTTGTATTTGATTTGACACACTGGAAACTTTGTTTCCTCCCATGTCAA
AATTGAAATCTTGATCAAATGATTTCTAGGTTATGTGTCCCAAATTGATGTTTATGTACAAGACATATGGGCTTG-TCTG
CAATTTACATCTGTG--GTGTGACTGTTCACAAGTTGTAAGAATTGATTCTGGAGTTGCAGCTGCATGTACGTAGTTGCA
GATGCGTGTTTGTGGAATATACTTGCGTGCTATCCCTATCCAAACAAGGCCCAACAGTTTTTCTACAG--------GGGA
AATGGCTTCCGGTGGTTTCATCCGTGACCAGTAAAATACCCCTATATC-GTAATACAGCTGCATATATTTACATGGTATT
CAAGCAGGGCATTAGTGTAGTATTGTCAGCTGATGAATTTTTTGGATCCTACGGTATCCCTTTCAGTTGATTGGACTGAT
CTTCAACTGTGAAGGTCCCTATGGTTTTTGTCTTCAGAGTTTTTGACTTATCTTTGTTGGAACAACTTTTTAAGCTAGGT
AAAATGATCTAGACATAGTGTAGTATTATAAACTGCTGCACAATGTTAAGAAGTCCTCATGTACGCAGTTCGCTTATTTG
GATTGATCTTGGACCATATACATGCCCCTACTGTTTTCACCTTTCCACTTATCCATGTTGGGATAATTGTGTGGAAGGTT
GTGTATGCAGTCTAGTGTGATTGTGTAAGTCACGTTTGAAATTTGTTGCTGAGCTCTTGGCTATTATGTCTATTTTGCAG
ATCTGAGGAGATCCGCTTCCTTTTGGTTTATTTGTGAGGCAGTACACCTGAAGAAATGTCAGGAGGTAGGCAGACATATT
GGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGGAAATGGAGTGTCCTTACTGTGATGCTGGCTTTGTGGCT
GAAATGGATGATGTCGATGCTCTCATGAGCCAGTTTGTTGGGATGTATAGTGATTTTCATCGTGACCCAAGGTTTGGGAT
CATGGAAGCAATGTCTACCGTGATGCGACATGGAATGGGGAGCATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCA
TATTATCTGACCTGGAGATGGAATTTGGTTCAGGGCCATGGTTGCTCTTCCGTGGCCAGCTCCCTGGTCATCTCTCAGAG
GCCAATAATGGTTTCGACGTTTTCGTCAATGGACGCCGTGGTGTTGGCACGCGGAGGGCAGATGTTGCAGATTACTTTGT
TGGGCCTGGATTAGAAGATCTAATTGAGCAGTTGACTCATAATGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCGA
TAGATGCCATGCCTAGTGTTAGGATCACTGCTAGGCATCTCACTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTT
GAACTGGAATCGGAAGCAAGAGAGATGCCATGCAAGCATTTATACCACTCTGATTGCATACTTCCTTGGCTAGAACAACA
CAATTCCTGTCCTGTTTGCCGATATGAGCTGCCAACACAGAGCTCTAGTGGTGCCAGCTGCTCACGCTCAAGATCAACCA
ACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGGAGAACCAGTGGGCGTCA---GAGAAGGAATCCGTTCTCGTTC
CTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGTTAGATTAGTTTGGTTACCTGGTTGGAGTTCACAATGCT
ATCTT-AGTGAAAATGCTGATCGAATGGGCTTTATGTATGTCGCGTCTTACACCCAATATGTAATGTATGGCTTGTTATA
GTCGCCCCACAAAATGGATTTCCTTGCAAGTATATAGTCATCTATCTTGCTAAATTTCATAGCAGCTGATTTTGTTTGCT
TTTACACAAGTCAATATGAACTTCTTATTTTGAGTTTTCAATATAAACTTTTTGGGGGTGAGAGGTCGGATATTTATTTT
CTGCTGTATTGGTTGTTTTGTAGTTGATGCATAATATATACCTAGTAAATTTGTTTATTTGTTGCTGGACAGGAATTTTT
GGAACATGGTTTCAAGCGCACT-CGTTAGAACAGTAAAATAAAAAAAAACTA----TTTTAAAAAAAAATCTGACACCTG
AGAAACCTGTTGATTGTTGCACCTTGAAATTTCAAGGTATCCATCAATGGTAGCAAGTATGATTCTAAAAATACCGAAGA
CGAACTCTTGCCCTATA----------------------------TAAGAGTGTTTTTTACAGTAGTTGATATTAGTGGG
TTGACGTAGTATTGA-------TTTGATATTTGTTATTAGTACAAGCTAAAATTACGGTGGGATCTCATACTAGTGGATC
CTCGAGCTGACATGAAAAAAATTACGGTGGGATCTCATACTAGTGGATCCTCGAGCTGACATGAAAAAAGTAGTCATGCC
CGCCCGCTCTCGTGATAGTCCACCGGCTTCCATCGGCGTCGGCCGCTCAGATGCCGTCGGCCATCCCCCTCCTAGCCGTC
CTTCCCACCCTCGTCGCCGGCCCTCCCCTCCCTCCCCGCCTCAGGTGTTGTGGGGCTTCCTCCCCA--------------
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----------------------------------------------------------------------TCCAACTATT
TGTGGTCGTGGGTGCGCGACTGCATGGTATTTGGATTGGGAGGTCGACCCTCAGCTGCATCAGAGGATGCACCACCTTTA
GGCCTTTCATT-GTGTTGTTCTTACCGACACCCTTCTTGGCCTTACCCTTC
>chr3D_1
ACCCGCCCCTTCCTCCTTGCAGAGTAAACAAGGGGTTCCT--------------GAGGCCCCAAGGTAAAAGTCCAATCG
TATTGCCCGTGGATCTCTGTATCTCGTTTAATTCTTCTAGTATGTGGCAAAGGTGCTTGGCGTGAACGCGGACAAACAAA
CCTTTCTTGCATCAGCTGGGTCTCAGCTTCGTCTTGTATTTGATTTGACACACTGGAAACTTCGTTTCCTCCCGTGTCAA
AATTGAAATCTTGATCAATTAATTTCTAGTTTATGTGTGCCAAATTGATGTTTATGTACAAGAGATATGGACTTGGTCTG
TAACTTACATCTGTGGTGTGTGACTGTTCACAAGTTGTAAGAATTGATTCTGGAGTT--------------------GCA
GATGCGTGTTTGTGGAATATACTTGTGTGCTATC------CAAACAAGTCCCGAAAGTTTTTCTTT------ACACGGGA
AATGGTTTCCGGTGGTTTCATCTGTGGCCAGTAAAATAACCCTGTATC-TTAATACAGCTGCATATATTTACATGATATC
CAAGCAGGGCCTTAGTGTAGTATTGCCAGCTGAAGAATTTTTTGGATCCTACAGTATCCCTTTCAGTTGGTTGGATTGAT
CTTCGACTGTGAAGGTCCCTATGGTTTTTGTCTTCCGAG-TTTTGTCTTATCTTTGTTGGAACAACTTTTTAAGCAAGGT
AAAATGATCTAGACATAGTGCAGTATTATAAACTGCTGCACAATGTTAACAAGTCCTCGAGTACGCACTTTGCTTATTTA
GACTGATCTTGGACCATACGCATACTGTC-----TTTTATCTTTTCGCTTATCTATGTTGGGATAATTGTGTGGAAGGTT
GTGTGTGCAGTCTAGTGTGATTGTGTAAGTCATGTTTGAAATTTGTTGCTGAGCTCTTGGCTATTATGTCTATTTTGCAG
ATCTGAGGAGATCCGCTTCCTTTTGGTTTATTTGTGAGGCAGTGCACCTGAAGAAATGTCAGGAGGTCGGCAGACATATT
GGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGGAGATGGAGTGTCCTTACTGTGATGCTGGCTTTGTGGCT
GAAATGGATGATGTCGATGCTCTCATGAGCCAATTTGTTGGGATGTATAGTGATTTTCATCGTGACCCAAGGTTCGGGAT
CATGGAGGCAATGTCTACCGTGATGCGACATGGAATGGGGAGCATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCA
TATTATCTGACCTGGAGACGGAATTTGGTTCAGGGCCATGGTTGCTCTTCCGTGGCCAGCTCCCCGGTCATCTCTCAGAG
GCCAATAGTGGTTTCGACGTTTTCGTCAATGGACGCCGTGGTGTTGGCATGCGGAGGGCAGATGTTGCAGATTACTTTGT
TGGGCCTGGATTGGAAGATCTGATTGAGCAGTTGACTCATAATGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCGA
TTGATGCCATGCCTAGTGTTAGGATCACTGCCAGGCATCTCACTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTT
GAACTGGGATCAGAAGCAAGAGAGATGCCATGCAAGCATTTATACCACTCTGATTGCATACTTCCTTGGCTAGAGCAACA
CAATTCCTGTCCTGTTTGCCGATATGAGCTGCCCACACAGAGCTCTAGTGGTGCCAGCTGCTCACGCTCAAGATCAACCA
ACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGGAGAACCAGCGGGCGTCAGAGGAGAAGGAACCCGTTCTCGTTC
CTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGTTAGATTAGTCTGGTTACCTGGTTGGAGTTCACAATGCT
ATTTTTAGTGAAGATGCTGATCAAATGTGCTTTATGTGTGTCACGTCTTACACCCAATATGTAATGTATGGCTTGTTATA
GTCGCCCCACAAAATGGATTTCCTTGCGAGTATATAGTCATCTATCTTGCTAAATTTCGTAGCAGCTGATTTTGTTTGCT
TTTACACAAGTCAGTATAAACTTCTTTTTTTGAGATTTCAATATAAACTTTTTGGGGGTGAGAGGTCGGATATTTATTTT
CTGCTGTATTGGTTGTTTTGTAGTTGTTGCATAATATATACCTAGTAAATTTGTTTATTTGTTGCTGGACAGGAATTTTT
GGAACATGGTTTCAAGAGCACCCCGTTAGAACAGTAAAATAAAAAAATACTA----GAAAAAAAAAATCA----------
--AAACCTGTTGATTGTTGCACCTTGAAATTTTAAGGTATCCATCAATGGTAACAAGTATGATTCTAAAAATATCGAAGA
CAAACACTTGCCCACATA--TAGGTACTCCCTCCATCCCATAATATAAAAGCGTCTTTGACAGTAGTTGATATTAATGGG
TTGACATGGTATTGAGTGTTGACTTGATATTTGTTATTAGTACAAGCTAAGATTACGTTGGGATCTCGTACTAGTGGATC
CTCGAGCTGACATGAAAA------------------------------------------------AAAGTAGTCATGCC
GGCCCGCTCTTGTGATAGTCCATCGGCTTCCATCGACGTCGGCCGCTCAGATGCCGCCGGCCACCCCC-TCCTACTTGTA
CTTCCCACCCTCACCGCTAGCCCTTCCCTCCCTCCCCGCCTCAGGTACCGCGGGGCTTCCTCCCCA--------------
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----------------------------------------------------------------------TTCAACTATC
TGTGATTGTGGGTGCGCGGCTGCATGAGATCTGGATTGGGAGGTCGACCCCCCGCCACATCAGAGGACGCACCACCTTTA
GGCTTTCCATT-GAGTTGTTCTTACCGACACCCTTCTTGGCCTTACCCTTC
>chr3A_52
---------------------------------------------------CCCAAGGCCCCAAGGTAAAAGTCCAATCG
TATTGTCCGTGGATCTCCGTGTCCTGTTTAATTCTTGTAGTATGTGGCAAAGGTGCTTGGCGTGAGCGCCCACAAACAAA
CCCTTCTTGCATCAGCTGGGTCTCAGCTTCGTCTTGTAGTTGATCTGGCACACTGGAAACTTTGTTTCTTC-CATGTCAA
AATTGGTATTTTGATCAAATGATTTCTAGTTTATGCGTCCCAAATTGATGTTTATGTGCAAGACATGTGGGCTTG-TGTG
TAATTTACATCTGTG--GTGTGACTGTTTACAAGTTGTAAGAATTGATTCTGGAGTTGCTGCTGCATGTACGTAGTCGCA
GATGCGTGTTTGTGGAATATACTTGTGTGCTATC------CAAACAAGTCCCGAAAGTTTTTCTTTTTCTTTACACGGGA
AA----------TGGTTTCATCTGTGGCCAGTAAAATACCCCTGTATCTTTAATACAGCTGCATATATTTACATGGTGTC
CAAGCAGGGCCTTAGTGTAGTATTGTGTGCTGATGATTTTTTTTGGATCCTATGTATCCCTTTCAGTTGGTTGGACTGAT
CTTCGACTGTGAAGGTCCCTATGGTTTTTGTCTTCCGAG-TTTTGTCTTATCTTTGTTGGAACAACTTTTTAAGCAAGGT
AAAATGATCTAGACATAGTGTAGTATTATAATCTGCTGCACAATGTTAAGAAGTCCTCGAGTACGCAGTTCGCTTGTTTG
GACTGATCTTGGACCATGTACATGCCCCTACTGTTTTCATCTTTTCACTTATCCATGTTGGGATAATCGTGTGGAAGGTT
GTGTATGCAGTCTAGTGTGATTGTGCAAGTCACGTTTGAAATTTGTTGCTGAGCTCTTGGCTATTATGTCTATTTTGCAG
ATCTGAGGAGATCCGCTTCCTTTTGGTCTATTTGTGAAGCAGTACACCTGAAGAAATGTCAGGAGGTCGGCAGACATATT
GGTGCTTCCAGTGTAGACAGCGGGTTAGGCCGCGTGGACGGGAGATGGAGTGCCCTTACTGTGATGCTGGCTTTGTGGCT
GAAATGGATGATGTCGATGCTCTCATGAGCCAATTTGTTGGGATGTATAGTGATTTTCATCGTGACCCAAGGTTCGGGAT
CATGGAGGCAATGTCTACCGTGATGCGACATGGAATGGGGAGCATGAATCGAGAGGCTGATGTAAGAGGAAGGCCAAGCA
TATTATCTGAACTGGAGATGGAATTTGGTTCGGGGCCATGGTTGCTCTTCCGTGGCCAGCTCCCCGGTCATCTCTCAGAG
GCCAATAATGGTTTCGACGTTTTCGTCAATGGACGCCGTGGTGTTGGCATGCGGAGGGCAGATGTTGCAGATTACTTTGT
TGGGCCTGGATTAGAAGATCTGATTGAGCAGTTGACTCATAATGATCGTCGAGGGCCACCACCTGCCTCTCAGTCATCTA
TTGATGCCATGCCTAGTGTTAGGATCACTGCCAGGCATCTCACTGGAGACTCGCATTGCCCTGTCTGCAAGGACAAGTTT
GAACTGGGATCAGAAGCAAGAGAGATGCCATGCAAGCATTTATACCACTCTGATTGCATACTTCCTTGGCTAGAACAACA
CAATTCCTGCCCTGTGTGCCGATATGAGCTGCCAACACAGAGCTCTAGTGGTGCTAGCTGCTCACGCTCAAGATCAACCA
ACCAAAATGACAGTTCAAGCAGCTCAAGTAGCAGTGGAAGAACCAGTGGGCGTCAGAGGAGAAGGAATCCGTTCTCGTTC
CTATGGCCTTTCCGCTCATCAAGTTCTAGCACTGGTTCTCGTTAGATTAGTTTGGTTACCTGGTTGGAGTTCACAATGCT
ATTTT-AGTGAAGATGCTGATCAAATGGGATTTATGTGTGTCGCGTCTTACACCCAATATGTAATGTATGGCTTGTTATA
GTCGCCCCACAAAATGGATTTCCTTGCAAGTATATAGTCATCTATCTTGCTAAATTTCATAGCAGCTGATCTTGTTTGCT
TTTACACAAGTCAGTATAAACTTCTTA-TTTGAGATTTCAATATAAACTTTTTGGGGGTGAGAGGTCGGGTATTTATTCT
CTGCTGTATTGGTTGTTTTGTTGTTGCTGCATAACACATACGTAGCAAATTTGTTTATTTGTTGCTGTACAGGAATTTTT
GGAACATGGTTTCAAGCGCA-CCCGTTAGAACAGTAAAATAAAAAAATAAAAGTTTTTTTTAAAAAAAATCTGACGCCTG
AGAAACCTGTTGATTGTTGCACCTTGAAATTTCAAGATATCCATCAATGGTAGCAAGTATGATTATAAAAATACCGAAGA
CAAACACTTGCCCACATAGATAGGCACTCCCTTCGTCCTATAATGTAAGAGTGTTTTTGACAATAGTTGATATTAGTGGG
TTGACATGGTATTGA-------CTTGATATTTGTTATTAGTACAAGCTAAAATTACGGTGGGATCTCATACTAGTGGATC
CTCGAGCTGACATGAAAA------------------------------------------------AAAGTAGTCATGCC
CGATTGCTCTTGTGATAGTCCACCGGCTTCCATCGGCGTCGGCCGCTCAGATGCCGTCGGCCACCCCCCTCCTACCCGTC
CTTCCCACCCTCATCGTTGGCCCTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCATCTATC
TGTGGTCGTGGGTGCGTGACTGCATGGTATTTGGATTGGGAGGTCGACCCTCAGCTGCATCAGAGGACGCACCACCTTTA
AGCCTTCCATTTGTGTTGTTCTTACGGACACCCTTCTTGGCCTTACCCTTC
>SNPs
----------------------------SS-------SSSSSSSSSSSSSS--------------------------S--
--------S----------S----------------------------S----------S--------------------
--------------------------S-----------------------------------------------------
-----------------------------S--------------------------------------------------
S----------------------------------------------------------S----------------S---
-------------------------S--------SSSSSS--------S---S-S---------SSSS------------
-----S----------------S---S----------------S-----S-----------------------------S
----------S-----------------------------------------S----------------S----------
----S------------------------------S---S-----S-----------------------------S----
----------------------------------------------------------SS--------------------
--S------------------------------------S----S-----------------------------------
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-------------------------------------------------------------------S------------
-------------------------------------------S------------------------------------
--------------------------------S-----------------------------------------S-----
------S-------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-------------------------------------------------S------------------------------
---------------------S----------------------------------------------------------
-S-----------------------------S------------------------------------------------
-------S---S--------------------------------------------------------------------
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--S---------S---------S--------------S------------------------------------------
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-------------S---S----------------S---------------------------------------------
--------------------------S-----------------------------------------------------
---------------------S-------------------------S---------------------------S----
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-S---S-------SSSS-----------------------------------------S---------------------
-----S-S--------------S---------------------------------------------------------
------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----------S----------------------------------------------------S----------S-----
------------S----S----------------------------SSS-S-----------------------------
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-------------------------------------------------------------------------------S
-------------------------------------------------------------------S------------
------S--------------------------------------------
>forward_140
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----------------------------------------TATGTGGCGAAGGTGCTTGA--------------------
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>reverse_1345
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----------------------------------------------------------------TGGTCATCTCTCAGAG
GCCA----------------------------------------------------------------------------
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>forward_453
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---------------------------------CCCTATCCAAACAAGGCCCA---------------------------
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>reverse_1958
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-------------------------------------ATGTCGCGTCTTACACCCAA-----------------------
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