>input_sequence_66751
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---ATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTTCCTGTGGCGGCGCCGCGGTCGGCCAACGGCACGGCGAA
CGGCGGCGGCGTAGGGACACCTCGGCCTCCGTCCATGGTGCCCGGTCGCGTCCCGCCCCCGCCGATGTACCGACCGAAGC
CGATGCAACCGCCACCGGGCCGTCGGCGGAGCGGGCGCGGGTGGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTG
GTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTCTACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGT
GACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGACTCCGTCACCTCCCGCATCGAATTCACAGTGACCGCGC
GCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCGGGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGAC
GGCACCGTGCCGGGCTTCCTCCACCCCAGCCGCAACACGACGGTCATCAAGGGGTCGGCTTCGGCGGCGGCCGCGACGGT
GGACCCCGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCATGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCC
AGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGCTGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCG
CCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCGACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGG
AGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCGCGTCAAGATCTGGATTTGGACGTTTTGA----------
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>chr3B_1_TraesCS3B01G237100
TTTCATCAACATGAATGTCCGAAGGATATAACCGAAAGATAAACTCATCACGAGCTTGTCCTTGGCCCATGAATTGCAAC
CATAGACCTAGCATCATTGTTGTGCCTGAAGATACAATTAACCACAATACAATATTGGCGAATCTCAACAAGATTTTCTT
GCAAGATAGGAGAATTCCAGAGCAATAAAATTCCCTGAAGTACACACCCAACGAGCATACACATATACAAAATTTATGAA
TTGATTTCTGATCTAAGAAATCACATTTAATTTCCTAAAAACAAATAACAACACAATGACTTTCTTGATTTTTTCATCTA
ACCAAATATTCTTGAGCATCTGAATTTAAACCACGAATATTTCAACAGAGCATCATTCAAAGCACATTAGTACGTGTAAG
AAAAGCACAAACAAGAATATATATGTAATTTACT----------------------------------------CATAAC
AAAGCAAAAAGATAAAGAGGTTGAAAAGGAACTAATAAAAAGGGGGAAATCCTCGCAAGA-AAAGCGAGTGACCATAGAA
ATTGGGT-TGCCTAGACCAGCAAGCAAACACATACTAGCACAATATA-ACAGTGTATATATAAATGCGTCCACTTATTGC
GCCCAACTTCTTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTTCCTGTGGCGGCGCCGCGGTCGGCCAACGGCACGGCGAA
CGGCGGCGGCGTAGGGACACCTCGGCCTCCGTCCATGGTGCCCGGTCGCGTCCCGCCCCCGCCGATGTACCGACCGAAGC
CGATGCAACCGCCACCGGGCCGTCGGCGGAGCGGGCGCGGGTGGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTG
GTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTCTACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGT
GACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGACTCCGTCACCTCCCGCATCGAATTCACAGTGACCGCGC
GCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCGGGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGAC
GGCACCGTGCCGGGCTTCCTCCACCCCAGCCGCAACACGACGGTCATCAAGGGGTCGGCTTCGGCGGCGGCCGCGACGGT
GGACCCCGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCATGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCC
AGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGCTGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCG
CCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCGACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGG
AGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCGCGTCAAGATCTGGATTTGGACGTTTTGATGCATCTGCG
GGTAGGGAGAGGAGGGATTTT-TTCGGTTTGGTTT-AACCTTTTTCACACTGTATGTGGATTTATTGGAGTATAGTTTAT
ATGATTTTATCTTCCTCTTGGTTTCTTTGCTTGCTACTCTCATCCATCCTTTCTTTGTCACAAGCAAAAACGAGCCGAGT
ATGCCGCGTAGATCTATGCTAC------------AGTTGGGCATAATTCTGCAAGAACGGG--A------GTACTAGTTA
ACCACACCACAGTGAAACCTGCAGCCGAGAAGAAATGGAAGTGAACTCCAGTAC---GCGAGCGAGGGATTCGGCGCACG
CACGTCGGTGGCGTCAACAGAAGCGGGCGATCTCCAGCTCGATTTCCTTTTTGGTTTCTCTCCCTCCCGTTTCCTCAATC
TCTCCTCTCCTCTCCTCTCCTCTCATCCG-GGGCACAGCTGTACCTTGGCTGGCAGCC------GACGCC------GACG
TGCGGGCCCATCGGTTTCCGGAACAGCAT---GTAGTGAACTGTGGATAGGCGGCTGGGCCTGGGAAGAA---AAAAATG
CTGTTGGTTTTGTGCGTG---------GCGAGGCGATATGACGTGTGTCGGGGAGAGGATGAGGGAGAGAGAAACGGTGG
ACGTCACTCTCGCTCCAGTCCAGTGAC-TTGGCTCGGCTCGGCAGTGCAGCAGGGGTCT-----------CCTAGTCCTA
AGTGAACAGTGACAACCGCTGAGTGCTGATAGTGGTAGTACAATCCGAGAGAGAGGAGGTGATTTT--TTTTATTTCAAG
AATTCCAGAAGAAAGGAGATAAGGGACGGATGATTAGTCAGTGAGAAT--------------------------------
---------------------------TGCTAAGCGCAGTGGACCACGTGAGGTGTGAATGCTGGGTACGCGACCTCGCC
GAGATTTGCTAAGCGCACATGAGTCGCATACGCCATGCATAACGGTCACATAATCATCTGTGTAGTTTCTTAATCAGTAC
GGTTGGCGAGCAACGGAAGAAGCGGGGTGATCATAGGCGTGTGCAGGGCATGTGCAGTACTTCGTGCGTTCACTTT
>chr3D_231
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----------------------------------------------------------------------AATTTATGAA
TTGATTTCTGATCTAAGAAGTCACATTTAATTTCCTAAAAACAAATAACAACACAATGACTTTCTTGAATTTTTCATCTA
ACCAAATATTGTTGAGCATCTGAATTTAAACCATAAACATTTCAGCAGAGCACCTTTCAAAGTACATTAGTACGTTG-AG
AAAAGCGCAAACAAGAGTATATATATAAATGCGTCCACTTATTGCGCCTCGACCAGCAAAAAAAAGTGAGTGACCATAAC
AAAACAAAAAGATAGAAAGGGTGAAAAGAAACTAATAAAAAGGGGGAAATCCTTGCAAAAGAAAGTGAGTGGCCATAGAA
ATTGAGAATGCCTAGACCAGCAAGCAAACACAT-CTAGCACAATATA-ACAGTGTATATATAAATGCGTCCACTTATTGC
GCCCCTCTTCTTCGCGTTTCTCCCCCC---AGTCTCTTTTACTCTCCCCTTCTCCTTCCCCAAGCCAAGCAGAAGCAGCA
GAGGCCAAGAA---------------------------------------------------------------------
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---ATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTCCCTGTGGCGGCGCCGCGGTCCGCCAACGGCACGGCGAA
CGGCGGCGGCGTAGGGACACCTCGGCCTCCGTCCATGGTGCCCGGTCGCGTCCCGCCCCCGCCGATGTACCGACCGAAGC
CGATGCAACCGCCACCTGGCCGTCGGCGGAGCGGGCGCGGGTGGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTG
GTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTCTACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGT
GACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGACTCCGTCACCTCCCGCATCGAGTTCACGGTGACCGCGC
GCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCGGGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGAC
GGCACCGTGTCGGGCTTCCTCCACCCCAGCCGCAACACGACGGTCATCAAGGGGTCGGCTTCGGCGGCGGCCGCGACGGT
GGACCCCGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCATGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCC
AGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGCTGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCG
CCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCGACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGG
AGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCGCGTCAAGATCTGGATTTGGACGTTTTGATGCATCTGCG
GGTAGGGAGAGGAGGGATTTT-TTCGGTTTGGTTTTAACCTTTTTCACACTGTATGTGGATTTATTGGAGTATAGTCTAT
ATGATTTTATCTTCCTCTTGGTTGCTT--CTTGCTACTCTCATTCATCCTTTCTTTGTCACAAGCAGAAACAAGCCGAGT
ACGCTGCATAGATCTAGGAGTATGCTACAGTCGGAGTCGGGCATAATTCTGCAAGAAGGGTATA------CTACTAGTTA
GCCACACCACAGTGAAACCTGCAGCCGAGAAGAAATGGAGGTGAACTGGGTACGCGAGCAAGCGAGCGATTCGGCGCACG
CGCGTCGGTGGCGTCAACAGAAGCGGGCGATCTCCAGCTCGATTTCCTTTTTGGTTTCTCTCCCTTCCGTTTCCTCAATC
TCTCTTCTCCTCTCGTTTCCTCTCATCCG-GGGCACAGCTGTACCTTGGCTGGCAGCCGACGCCGACGCC------GACG
TGCGGGCCCATCGGTTTCCGGGACAGCAT---GTAGTGAACTGTGGATAGGCGGCTGGGCCTGGAAAGAAGAAAAAAAAT
GCCGTTGGTTTTGTGCGTGGCGAGGGCGCGAGGCGATATGACGTGTGTCGGGGAAAGGATGAGGGAGAGAGAAAGGGTGG
ACGTCACTCTCGCTCCGCTCCAGTGCC-TTGGCTCGGCTCGGCAGGG----------CT-----------CCTAGTCCTA
AGTGAACAGTGACAACCGCTGAGTGCTGATAGTGGTAGTACAATCC---------GAGGTGATTTT--TTTTATTTCAAG
AATTCCAGAAGAAAGGAGATAAGGGACGGATGATTAGTCAGTGAGAAT--------------------------------
---------------------------TGCTAAGCG--------------------------------------------
---------------CACATGAGTCGCATACGCCATACATAACGGTCACATAATCATCTGTGTAGTTTCTTAATCAGTAC
GGTTGGCGAGCAACGGAAGAAGCGGGATGATCATCGGAGTATGCAGGGCATGTGCAGTACTCTCTCCGTTCACTTT
>chr3A_409
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--------AAACAAGAAGTTATATAAAATTTACT----------------------------------------CATAAC
AAA----AAAGATAAAGATGGTGAAAAGAAACTAATAAAAAGGGGGAAATCCTTACCAAA-AAGGTGAGTGACCATAGAA
ATTGAGAATGCCTAGACCAGCAAGCAAACACATACTACCACAATATATACAGTGTATATATAAATGCGTCCACTTATTGC
GCCCCTCTTCTTCGCGTTTCTTCCCCCCACAGTCTCTTTTACTCTCCCCTTCTCCTTCCCCAAGCCAAGCAAAGGCAGCA
GAGGCCAAGAA---------------------------------------------------------------------
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---ATGGGCGACCGGGCGTACGGGCCGTCCTCCAAGCCGGTCCCTGTGGCGGCACCGCGGTCCGCCAACGGCACGGCGAA
CGGCGGCGGTGTAGGGACACCTCGGCCTCCGTCCATGGTGCCCGGTCGCGTCCCGCCGCCGCCGATGTACCGACCAAAGC
CGATGCAACCGCCACCGGGCCGTCGGCGGAGCGGGCGCGGGTGGTGCTGCGCGTGTTGCCTGTGGCTGACGCTGGTGTTG
GTGGGGCTGGTGTTCCTTGGAGCAATAGCGTTGGGGGTGTTCTACGTGATTTACCACCCGGAGCTTCCGACCTTCGCCGT
GACGTCGCTCCGTCTGGCGGCGCTGAACGTCTCCGACTCCGACTCCGTCACCTCCCGCATCGAGTTCACGGTGACCGCGC
GCAACCCCAACGAGAAGATCGCGTTCGTGTACGGCGACATCGGGGCTGCCTTCGCGGCCGACGGCACGGACATCGGGGAC
GGCACCGTGCCGGGCTTCCTCCACCCCAGCCGCAACACGACGGTCATCAAGGGGTCGGCTTCGGCGGCCGCCGCGACGGT
GGACCCGGTGCAGGCGGCCAGTCTCAGATCCAAGAAGTCCCATGCGATGTCAGTGGAGATGGACTCCAAGGTGGGTTTCC
AGATCGGGCAGTTCAAGTCGAAGCGCATCAGCGTCCGTGTGCTGTGCGGTGGCTTCAGCGCGGGGCTGGCCAAGCCGGCG
CCCTCCCCGGCGCCGATCATCGTGGCCGCGGCGCCTGCGCCGACCCGGTCAAAAATCAGGCTGTCGTCGTCTTCCACCGG
AGGCGGCGGGTCGGCGACGACGGACGCAAAGTGTAAGCTCCGCGTCAAGATCTGGATTTGGACGTTTTGATGCATCTGCG
GGTAGGGAGAGGAGGGATTTTTTTCGGTTTGGT-TTAACCTTTTTCACACTGTATGTGGATTTATTGGAGTATAGTCTAT
ATGATTTTATCTTCCTCTTGGTTGCTT--CTTGCTACTCTCATTCATCCTTTCTTTGTCACAAGCAAAAACAAGCCAAGT
ACGCTGCATAGATCTATGCTAC------------AGTCGGGCATAATTCTGCAAGAAGGGTATAGTAGTACTACTAGTTA
ACGACACCACAGTGAAACCTGCAGCCGAGAAGAAATGGAGGTGAACTGGGTACGC----AAGCGAGCGATTCAGCGCACG
CGCGTCGGTGGCGTCAACAGAAGCGGGCGATCTCCAGCTCGATTTCCTTTTTGGTTTCTCTCCCTACCGTTTCCACAATC
TCTCTTCTTCTCTCATCCGGGGAACCGGCCGGGCACAGCTGTACCTTGGCTGGCAGCCGACGCCGACGCCGACGCCGACG
TGCGGGCCCATCGGCTTCCGGGACAGCATATAGTAGTGAACTGTGGATAGGCGGCTGGGCCTGGAAAGAA---AAAAAAT
GCCGTTGGTTTGTGCGTG---------GCGAGGCGATATGACGTGTGTCGGGGAAAGGATGAGGGAGAGAGAAAGGGTGG
ACGTCACTCTCGCTCCAGTCCAGTGCCTTTGGCTCGGCTCGGCAGTG----------CAGCAGGGGTCTCCCTAGTCCCA
AGTGAACAGTGACAACCGCTGAGTGCTCATAGTGGTAGTACAATCCGAGAGAGAAGAGCTGATTTTTATTTTATTTCAAG
AATTCCAGAAGAAAGGAGATAAGGGACAGATGATTAGTCAGTGAGAATTGCTAAGCGCAGTGGACCACGTGAGGTGTGAA
TGCTGGGTAGGCGACCTCGCCGAGATTTGCTAAGCG--------------------------------------------
---------------CACATGAGTCGCATACGCCATACATAACGGTTACATAATCATCTGTGTAGTTTCTTAATCAGTAC
GGTTGGCGAGCAACGGAAGAAGCAGGATGATAATAGGGGTATGCACGGCTTGTGCAGTACTCTCTCCGTTCAC---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
-------------------S------------------------------------------------S-----------
----------S----------------------SS--S------S-------S-S-------S------------SSS--
------S-----------------S-------------------------------------------------------
---S----------------S-------S------------------------S----S------S--------------
----S-S-------------------------------------------------------------------------
----SS--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--------------------------------------S--------------------S-----------------
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---------------------------------------------------------------S-----S----------
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----------------------------------------------------------------------------S---
-----------------------S---SS--------------S---------------------------S--------
-S--S--S-----------------------------S-------------------S--S---------S---------
---------------------------------------S-------SSSSSSS-----S------S-------------
-S---------------------------------------------------------------S--------------
----S---------S-----------------------------------------------------------------
---------------------S------------------------------------------S-------------SS
SSSS-S-S----------------------------------------------S-------------------S-----
-------------------------S---------------------SSSSSSSSSS-----------------------
------------------------------------------------------S-------------------------
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------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---------------------S-------------------------------------------
--------------------------S----------S--S--------------------SSS-S----------
>forward_539
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---------------------------------------AAGGGGGAAATCCTCGCAAG---------------------
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>reverse_2479
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------------------------------------------------------------------------------TG
CTGTTGGTTTTGTGCGTG--------------------------------------------------------------
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