>input_sequence_66744
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----------------ATGACCGAGCGAAGGCAGGAACACTCGCCGCCGTCCAAGCTCCCCCGCCTCTCCGGCCCCG---
---ACGCCGACGACAACGACGGTAGGGAA-------------------CCGTCTGCCTCAGGCAAGCAAGTGATTCATTC
ATTAGTCTTTGACGTGCGTTGCTTGGATTA---GGCGCAGGGACGGTGACCATGGCGGCGCCGTCGCCGCTGGTTCTTGG
GCTGGGTCTCGGCGTAGGCGGCAGCAGCAGTGACAGTGGACGTGGCGACGCGGAGGCATCTGCGGCGACGCGGCCATCGG
CGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCCAACGCTCCCGTGCCC
GTGCACCTCGTCCTCCCCATCTGGAAGAGCGTCGCCGCCTCCTCCTCCGCCCCGCAGAGGTTCCCATCCCGTACGTGCCG
CGCGCTCTCCTCCTCGTACTAGTTTCC----------CCCCGGCGTTTACTGT----------CTGTTTGTTTTGGATTA
ATTGGTTGGTTATCGCCGATGTTGATCGTTTGGT---TTGTGCAGTGGCGGGACTGGGGAGCATGTGCTACGACCACAGG
AGCAGCATGGAGCCGGAGCCGGACCGGTGCCGGCGCACGGACGGCAAAAAGTGGCGGTGCTCGCGCGGCGTGATGCCGGG
GCACAAGTACTGCGAGCGCCACGTCCACCGCGGCCGCGGCCGTGCAAGAAAGCCTGTGGAAGCCGCGCCGGCCACATCAG
CCATCCCGATCCGCGCAATGCACGCCGCCGACGCGCAGGGCGCCACAAGCGCGCACGCGGCGCCACCGCAGCGCCTCGGC
TTCTCCTCCCCCGCCGGCGTCTACCTGGCCCACGGCACCGCCCGTGCCACCTGA--------------------------
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>chr2B_1_TraesCS2B01G416300
GGCATTTTATTTGCCCGAACTACGCTATGCCCCGAGGTCTCTTCACACCACAATGGGGATACAACGAGAACCCATTTTCT
CTTCGGTAGATGTCATCATACGATGTGGCCTTCTTGGCCATCTTGTACATCTTCTGCAAGAAAAGAAAATGTACTGCTGT
CATGTTTTAGATGGTCACGTACCGCGTGAAAGGAGGCTAGCCGGGTAGCCAGGGGACAGGGGTCGATGGCAGAGAGCGCA
CAGAGCCGAGCCATGTTGACCAGGCGAGGCCCC------------ATGCACAGCCCCATGCGTTTCACGGACGTAGATCT
GGGCATCTGGCCTTGCCCGTATCGCAATCTCGTGACACATCCATACGCGCGTGTACGGTGCGAGCGTCTACCCGGCATGC
GCGCCGGGATTCCTTGTACGGTGAGAGCGTGCCCGGCCCGGCGCT--------------------GGGCATGCATGGACG
CGGTCTCGGGTGTGCCGTGCTGTGGCTCCTGCATAGAGCCCGACGAGCCATGAGGCGTCGCCGCCCGTGGCACACTGCAC
GGCACGTGAAGCGCGCTTTCGCTACGGCGTTGAA---------------GGGTGCGGCCGCAGTGGGAAGCGGCGTGTCA
CCGGTGCGGTCGGCCGGCG--------TGTCCAGGGAACGGAACGGAGGCATTTA----AGGAAAAAACCTCCAAGGTGC
AGCCTGCAGCAAGCAAAACCATGGCCGAAGCGTCGTCGGTCTTTCCCAGCAGTTTGACAGTTCCAGTAATTGCAT-----
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---------------------------------------------------------CCCGTCAAAGTTCCGGAGCACCA
GCGAAGGTGTCAGCGGTGGAGTGTCCCGTACATGTAGCCAG---------CCCCTACTGACAGTCTGACACCGACAGCCG
ACGTCAAGCGGCAGCGTCGCGTCCCTTCGCTTCTCTCTACTCAAAGAACCTGCGCGAGCTCCATACCACTCTTGC-----
-CTCTATCCACAGCGTGTTCATTCCAACACAAGAACAACACACACGACGCGCACTCGCACCAGCCAGCCACGGAGGAAGA
AAGGCGCACTCCAGAGATGACCGAGCGAAGGCAGGAACACTCGCCGCCGTCCAAGCTCCCCCGCCTCTCCGGCCCCG---
---ACGCCGACGACAACGACGGTAGGGAA-------------------CCGTCTGCCTCAGGCAAGCAAGTGATTCATTC
ATTAGTCTTTGACGTGCGTTGCTTGGATTA---GGCGCAGGGACGGTGACCATGGCGGCGCCGTCGCCGCTGGTTCTTGG
GCTGGGTCTCGGCGTAGGCGGCAGCAGCAGTGACAGTGGACGTGGCGACGCGGAGGCATCTGCGGCGACGCGGCCATCGG
CGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCCAACGCTCCCGTGCCC
GTGCACCTCGTCCTCCCCATCTGGAAGAGCGTCGCCGCCTCCTCCTCCGCCCCGCAGAGGTTCCCATCCCGTACGTGCCG
CGCGCTCTCCTCCTCGTACTAGTTTCC----------CCCCGGCGTTTACTGT----------CTGTTTGTTTTGGATTA
ATTGGTTGGTTATCGCCGATGTTGATCGTTTGGT---TTGTGCAGTGGCGGGACTGGGGAGCATGTGCTACGACCACAGG
AGCAGCATGGAGCCGGAGCCGGACCGGTGCCGGCGCACGGACGGCAAAAAGTGGCGGTGCTCGCGCGGCGTGATGCCGGG
GCACAAGTACTGCGAGCGCCACGTCCACCGCGGCCGCGGCCGTGCAAGAAAGCCTGTGGAAGCCGCGCCGGCCACATCAG
CCATCCCGATCCGCGCAATGCACGCCGCCGACGCGCAGGGCGCCACAAGCGCGCACGCGGCGCCACCGCAGCGCCTCGGC
TTCTCCTCCCCCGCCGGCGTCTACCTGGCCCACGGCACCGCCCGTGCCACCTGACCTGATGACGGCATTTTCTTCAGTTA
GCTACAGATGTTTTGCTT-CCTTGTTTGTGCTAATCTGTAGCGGGAAATCTCCGAGGATTATGCTGTACTGGTGCTGGTA
A-TTTTTATTTTCGCCTTGACCACGCCTCGGTGTTCCCGAGTCGTCAAAGTTCGATGGCATGCGTAGGGGGG--TTCGTG
CTGCCCTGTTTACTCTGTCTGTGCAGTGACAC--TGACATGTCTGATGCCGCAGGCGAGTTGTTTTTCATTTGTTGTAGT
GGAAGACGCGCCTGGGTGCGGGGGTATGGGCGGGGCCCCGGCTAGTGGGGGTTCTGGGGCTGAGGGCCATGCTGAACGAC
CGGTCAGATGCTGGGGCGCAGACGCTGGACCC-------GTCCGTGGTGCAGACTGCAGAGTGGCCCGACCGAAGACCAG
CTCGCCGCAGCGACCAATACTCGAAAGAAACTTCGTGAAAAAATCCTACCTCCTCCGTCCAAAAAAACTCAAACTTGACG
GAGGGAGGACTATCTATCCATTACAATATGAGAGGAGATGAACTATCTATCTATTTCAATATGAGGGGACAACGAACTAT
CTATCCATTTCAATATGAAAGGACAACTAACACCAGAAATAATAAAAATTACATCTAGATTCATAGAGCATCAAACGATG
ACTGCAAACACTGTAGCGAGCCCAAGGCGTGCCGCTGTCATCGCTCCTCACTCACCGGAGCATGGGCAATATTGTTGTAG
TAGACAGTCGGAAAGTCGCCTCCTCACTCACCGGAGCCTGGCGATACTTGTTACAGTAGACAGTCGGGAAGTCATTGTGC
TAAGGCCTCGTAGGATCGGCCAACCAGAACATCAAATGCCGTCGATGAATAGTAGTGTAGATCGACAGGATCCAACATGA
AGACACACGAATGTAGACAAATGACGAATAAATCCGAGCAAATCCACCAAAGGCAGTTCTGTCAAAGACACACCTTCACA
CGCCCACCGACGATGCTAGATGCACCA
>chr2D_133
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----------------------------------------------------TCTGAAAGAAAAGAAAATATACCGCTGT
CATGTTTTAGATGGTCACGTACCGCGTGAAAGGAGGCTAGCCGGGTAGCCAGGGGACAGGGGTCGATGGCAGAGAGCGCA
CAGAGCCGAGCCATGTTGACCAGGCGAGGCCCC------------ATGCACAGCCCCATGCGTCTCACGGACGTAGATCT
GGGTATCTGGCCTTGCCCGTACCGTAATCTCGTGACACATCCATACGCGCGTGTACGGTGCGAGCGTCTACCCGGCATGC
GCGCCGGGATTCCTTGTACGGTGAGAGCGTGCCCGGCCCGGCGCTACACATGCTAGGTTCAGGCGGGGCATGCATGGACG
CGGTCTCGGGCGTGCC------------CTGCGTAGAGCCCGACGAGCCAAGAGGCGTCGCCG----TGGCACACCGCAC
TGCACGTGAAGCGCGCTTTCGCTACGGGCTACGGCGTTGAAGCCGCCGTGGGTGCGGCCAGCGTGGGATGCAGCGCGTCG
TCGGTGCTTCCCCGGCCTCACCTGCCATGTCCAGGGAACGGAACGGAGGCATTTA----AGGAAAA--CCTCCAAGGTGC
AGCCTGCAGCAAGCAA--CCATGGCCGAAGCGTCGTCGGTCTTG-CCAGCAGTTTGACAGCTCCAGTAATTGCAT-----
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---------------------------------------------------------CCCGTCAAAGTTCCGGAGCACCA
GCGGTGCTGTCAGCGGTGGAGTGTCCCGTACATGTAGCCAG---------C--------------TGACACCGACAGCCG
ACGTCAAACGGCAGCGTCGCGTCCCTTCGCTTCTCTCTACTCAAAGAACCTGCGCGAGCTCCATACGTACCACCCTTGCC
TCTCTATCCACAGCGTGTTCATTCCAACACAAACAG--CACACACGACGCGCACTCGCACCAGCCAGCCAGGGAGGAAGA
AAGGCGCACTCGAGAGATGACCGAGCGAAGGCAGGAGCACTCGCCGCCGTCCAAGCTCCCCCGCCTCTCCGGCCCCGACG
CCGACGCCGACGACAATGATGGTAGGGAAGGGTGTGCCGTACTTTTCCCCGTCTGCCTCAGGCAAGTAAATGATTCATTC
ATTAGTCTTTGACGTGCGTTGCTTGGATTA---GGCGCAGGGACGGTGACCATGGCGGCGCCGTCGCCGCTGGTTCTTGG
GCTGGGTCTCGGCGTAGGCGGCAGCTGCAGTGACAGCGGACGCGGCGACGCGGAGGCCTCTGCGGCGACGCGGCCGTCGG
CGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCCAACGCTCCCGTGCCG
GTGCACCTCGTCCTCCCCATCTGGAAGAGCGTCGCCGCCTCCTCCTCCGCCCCGCAGAGGTTCCCATCCCGTACGTGCCG
CGCACTCTCCT---CGTACTACTTTCT----------CACGGGCGTTC-CTGC----------CTGTTTGTTTTGGATTG
ATTGGCTGGTTATCGCCGATGTTGATCGTTTAATCTGTTGTGCAGTGGCGGGACTGGGGAGCATGTGCTACGACCACAGG
AGCAGCATGGAGCCGGAGCCGGACCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGGGGTGGTGCCGGG
GCACAAGTACTGCGAGCGCCACGTCCACCGCGGCCGCGGCCGTGCAAGAAAGCCTGTGGAAGCCGCGGCGGCCACATCAG
CCATCCCGATCCGCGCGATGCACGCCGCCGACGCGCAGGGCGCCACCAGCGCGCACGCGGCGCCGCCGCAGCGCCTCGGC
TTCTCCTCCCCCGCCGGCGTGTACCTGGCCCACGGCACCGCCCGTGCCACCTGACCTGACGCCGGCATTTTCTTCAGTTA
GCTACAGATGTTTTGCTT-GCTTGTTTGTGCTAATCTGTAGCGGGAAATCTCCGAGGATTATGCTGTAGTA------GTA
A-TTTTTATTTTGGCCTTGACCACGCCTCGGTGTTGCCGACTCGTCAAAGTTGGATGGCATGCGTAGGGGGG--TTCGTG
CTGCCCTGTTTACTCTGTCTGTGCAGTGACACACTGACATGTCTGATGCCGCAGGCGAGTTGTTTTTCATTTGTTGTGGT
GGGAGACGCGCCTGGGTGCGGGGGTATGGGCGGGGCCCCGGCTAGT--GGGTTCTGGGGCTGAGGGCCATGCTGAACGAC
CGGTCAGATGCTGGGGCGCAGACGCTGGACCC-------GTCCGTGGTGCAGACT-------GGTCCGGCCGAAGACCAG
CTCGCCG-------------------------------------------------------------------------
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>chr2A_142
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-------------------------------------------------------------AAAGAAAATATAGTGCTGT
CATGTTTTAGATGGCCACGTACCGCGTGAAAGGAGGCTAGCCGGG---------GACAGGGGTCGATGGCAGAGAGCGCA
CAGAGCCGAGCCATGTTGACCAGGCGAGGCCCCATGCACAGCCTCATGCACAGCCCCATGCGTCTCACGGACGTAGATCT
GGGTACCTGGCCTTGCCCGTACCGTAATCTCGTGACACATCCATACGCGCGTGTACGGTGCGAGCTTCTACCCGGCATGC
GCGCCGGGATTCCTTGTACGGTGAGAGCGCGCCCGGCCCGGCGCTACACATGCTAGGTTCAGGCGGGCCATGCATGGACG
CGGTCTCGGGCGTGCC------------CTGCATAGAGCCCGACGAGCCAAGAGGCGTCGCCG----TGGCACACCGCAC
TGCACGTGAAGCGCGCTTTCGCTACGGGCCACGGCGTTGAAGCCGCCGTGGGTGCGGCCGGAGTGGCATGCAACGCGTCG
TCGGTGCTTCCCCAGCCTCTCCTGCCATGTCCAGGGAACGGAACGGAGGCATTTATTTAAGGAAAA--CCTCCAGGGTGC
AGCCTGCAGCAAGCAA--CCATGGCCGAAGCGTCGTCGGTCTTG-CCAGCAGTTTTAGGCCTCCTTTGCTAGGAATTTCA
TAAAAATTCTAGAGGATAGGATTTTTATAATTTTTTTTCCTTTAGAGCCCTTTGGTTCATAGGAATGGATTTCTATTCCT
ATATAGATTGGTTCCTATCCTTCACATTTCATAGGAAAATAAAATAGAGCTTAGACTCAATGAATTTTTTTTATGTCAGC
CAAATAACATCTTGTTTCTTATTCCTATTCATAGAATTTGAAATACATGTCATCTTATTTCTTATAAGATTTTTATTTTT
ATGATAATCCTATCCTATGAACCAAAAAAGCCTTACAGTTCCGGTTAGTATTGCATCCCCGTCAAAGTTCCGGAGCACCA
GCGAAGCTGTCAGCGGTGGAGTGTCCCGTACATGTAGCCAGTCGCTGCTAC--------------TGACACCGACAGCCG
ACGTCAAACGGCAGCGTCGCGTCCCTTCGCTTCTCTCTACTCAAAGAACCTGCGCGAGCTCCATACCACTCTTGC-----
-CTCTATCCGCAGCAC--TCATTCGAACACAAAACAA--------------------CACCAGACAGCCACGGAGGAAGA
AAGGCGCACTCCAGAGATGACCGAGCGAAGGCAGGAGCACTCGCCGCCGTCCAAGATCCCCCGCCTCTCCGGC-------
-----GCCGACGACGATGACGGTAGGGAAGGGTGTGTCCTACTTTTCCCCGTCTGCCTCAGGCAAGTAAGTGATTCATTC
ATTAGTCTTTGACGTGCGTTGCTTGGATTAATAGGCGCAGGGACGGTGACCATGGCGGCGCCGTCGCCGCTGGTTCTTGG
GCTGGGTCTCGGCGTAGGCGGCAGCAGCAGTGACAGCGGACGCGGCGACGCGGAGGCCTCTGCGGCGACGCGGCCGTCGG
CGCTGACGTTCATGCAGCGGCAGGAGCTGGAGCACCAGGTGCTCATCTACCGCTACTTCGCCGCCAACGCTCCCGTGCCC
GTGCACCTCGTGCTCCCCATCTGGAAGAGCGTCGCCGCTTCCTCCTCCGCCCCGCAGAGGTTTCCATCCCGTACGTGCCG
CGCCCTCTCCT---TGTACTAGTTTCTTCCACTTCGTCCCCGGCGTTTCGGGCTTACTGTCTACTGTTTGTTTTGGATTG
ATTGGTTGGTCATCGCCGATGTTGATCGTTTGAT---GTGCGCAGTGGCGGGGCTGGGGAGCATGTGCTACGACCACAGG
AGCAGCATGGAGCCGGAGCCGGACCGGTGCCGGCGCACGGACGGCAAGAAGTGGCGGTGCTCGCGCGGCGTGGTGCCGGG
GCACAAGTACTGCGAGCGCCACGTCCACCGCGGCCGCAGCCGTGCAAGAAAGCCTGTGGAAGCCGCGGCGGCCACATCAG
CCGTCCCGATCCGCGCGATGCACGCCGCCGACGCGCAGGGCGCCACCAGTGCGCACGCGGCGCCACCGCAGCGCCTCGGC
TTCTCCTCCCCCGCCGGCGTCTACCTGGCGCACGGCACCGCCCGTGCCACCTGACCTGACGCCGGCATTTTCTTCAGTTA
GCTACAGATGTTTTGCTTTGCTTGTTTGTACTAATCTGTAGCGGGAAATCTCCGAGGATTATGCTGTACTGGTACTGGTA
ATTTTTTAGTTTCGCCTTGACCACGCCTCGGTGTTGCCGACTCGTCAAAGTTGGATGGCATGCGTAGGGGGGGGTTCGTG
CTGCCCTGTTTACTCTGTCTGTGCAGTGACACACTGACATGTCTGATGCCGCAGGCGAGTTGTTTTTCATTTGTTGAGGT
GGGAGACGCGCCTGGGTGCGGGGGTATGGGCGGGGCCCCGGCTAGT--GTTTTCTGGGGCTGAGGGCCATGCTGAACGAC
CGGTCAGATGCTGGGGCGCAGACGCTGGGCCCTCGACCCGTCCGTGGTGCAGAGT-------GGCCCGGCAGAAGACCAG
CTCGCCGCAGCGACAAATACTCGAAAGAAACT------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------------S---------
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---------------------------------------------------------------S----------------
---S-----------------S--S-------------------------------------------------------
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----------S-----SSSSSSSSSSSS----------------------S------------SSSS--------S----
S--------------------------SS-SSSS--------------------------S-------S--S---S---S
S------SSS-SSSSSSSS-----------------------------------------------SS------------
----------------SS-------------------------SS---------------S-------------------
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------S--------------------------------------------SSSSSSSSSSSSSS---------------
-------S------------------------------------------------------------------------
--------------------------------S--S-S------------------------------------------
------------------------------------S-------------------------------------------
----------------S-------------------------------------------------S-------------
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------------------------------------S-----S--------------S-----------------S----
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---S-------SSS------------S---------------------S---S--------------------------S
--------------------------------S-----------------------------------------------
-----------------------------------------------S------------------------S-------
-------------------------------------------------------------------S------------
----------------S-----------------------------S---------------------------------
-----------------------------------------------------------S-S------------------
-------------------S-----------------------------------------------------S------
-----------------------------------S----S-----------S---------------------------
-----------------------------------------------------------------------------S--
--S-------------------------------------------SS--------------------------------
-------------------------------------------------------SSSSSSS------S-----------
--------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1180
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----------------------------------------ATGTAGCCAGCCCCTACTGA--------------------
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>reverse_2436
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-----------------------------------CCCGAGTCGTCAAAGTTCGA-------------------------
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