>input_sequence_66734
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-------------------------------------------------------------------------ATGAACT
-----ACGAAACAGTCGCTCACAAGACGGCAGCACAGACCTCTGCGTATCGCCTTCTCCTCTGCATCCTCACATATAGCA
TAGAGAAAACAGTTTCTTGCGTCCTCTCTTTTGGTCACAAGAAAGAGATGGGTTCAGGTTCAACCACCGTCAGACTCATG
GCCTTCGCCTCCGCTCTCGTGCTACTGACGCACTGCATTCACGGTACAATCACTCGTCAA--------------------
----------TCTCCGAATTCCGTGGCAAAATCTCTCTGCAGATGTA-CT---TTACTGCTTGGTCTCCGATCTATTTAT
-----AGTTTCTAACATCGATCGATTGTTC----TGTGGCGAATTCCTTCAGCGGCAGCGGCACCAAGCTTTCAGCAGAA
ACAGGTGAGAGCCACTCTCCTGAC----CGCCTATCAGCATCT-------------ATCTTCTTCAGCTCTTCAGTTACT
CATAGTTTTGCTGCTGTTGGCTGATCCGCAGGCGGC---GGCCAAGACGTGGTGCGTGGCCAAGCCTTCGACCGGCGAGG
CGGCGCTGAGGGCCAACCTGGAGTTCGCCTGCTCCGAGAGCGACTGCAGCGCGATCCAGGGCACGGGGGGCTGCTCCGCG
CACAACGGCGGCGTGCTGCTGTCGCGGGCGTCGGTGGCCATGAACGCCTACTACCAGGCCAGGGGGAGGAACACCTGGAA
CTGCTTCTTCAACGCCACCGGCATCATCAGCATCACCGACCCCAGTAAGCATACATCGCGCATCTCATCTCATCTCATCT
CATGCCGCCG-TTTCTCAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTGCTCATCTGACCGCTT
CTTTCTTACT-----------TTCCTTCATTGCAGGTCTAGGCACTTGCAAGTATGCATGA-------------------
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>chr7D_1_TraesCS7D01G305500
ATCGGAACTCCAGTGGCGGCTGTGTGGAGGAGGGCCAACAGAGAAGAGAAGAGGCCTGGTCGGGCAAGGGGCGGATATGA
GCGAATTGGCGCAGGCCCTAGCGGTCAGTCTGACGTGGCAGGCGCGTCCGGGCATCCCCATATCTGCCCCAGATATGGCC
TAGGAATGGTAGGTGCCTGTCAGTCCGGGCATTTGTGGCGGATATGGGGCGCCCAGTTGGGTGGTGATTTCCCGTCCGTG
CGTTTGGGGGTATGGGGGCCCGGCTGTAGATGCTCTCATGGAGTTGGGTGGAGATTACCCACCGATGTCACCGATAAGTG
CATACTC---TGTTTTATTCCCCCACGCCACCGAGCCAAATATATATTTTTCACCAAAATTTCTGATTCTTGAAGGTAGA
GCTAGTTGAAAACAAAACACAGTAAACTGCTTTTTGATGGAGCTGTAACTT--GAATGAAACTGATTCATACTGGACTTG
ATGGAGTGGAGCGGTTCCAAACAAGGCCTAACTGTGGTAGTCTTGTTGGAAGTTTACTAGCATATCTGATAAGTACTCCC
TCCATTCCTAAATATATGAATGAATATATACTTTAAAATACGTCTATATACATCCGAATATAGTTTTTACAGTGGAATAT
ATTAAAAAAGAATTATATCT------------------CCAAGCTTGCTAGCGGTATACTGACAGAACTGAGTTTGTCGG
GCGTGTCGTGGAGATACCAGGCGTACATGGC----AGTGCTTTTTCTAACCGTGCTTGCTGTCGTTTTTATATTTTCGCG
TCCCTTCTCCGTAAAAGCATGGTCGTGACTGATCCGTCCCCTGAGAAACAGAAGAAACGGAGGCGTTTTGGCGAAATATA
--AATGCGGCGAACCCGCAATCAATGGTGGCGCATAAATTGGATTTGCTATTTCCTTCTTTTTGCGGTGAACCGCTTCTG
CAGCACACCCTTTCTGCTTCGACTTCCCCC----TCTTCTTCGCCTGCATATATTCACGCACACACCGCGAGCATGAACT
-----ACGAAACAGTCGCTCACAAGACGGCAGCACAGACCTCTGCGTATCGCCTTCTCCTCTGCATCCTCACATATAGCA
TAGAGAAAACAGTTTCTTGCGTCCTCTCTTTTGGTCACAAGAAAGAGATGGGTTCAGGTTCAACCACCGTCAGACTCATG
GCCTTCGCCTCCGCTCTCGTGCTACTGACGCACTGCATTCACGGTACAATCACTCGTCAA--------------------
----------TCTCCGAATTCCGTGGCAAAATCTCTCTGCAGATGTA-CT---TTACTGCTTGGTCTCCGATCTATTTAT
-----AGTTTCTAACATCGATCGATTGTTC----TGTGGCGAATTCCTTCAGCGGCAGCGGCACCAAGCTTTCAGCAGAA
ACAGGTGAGAGCCACTCTCCTGAC----CGCCTATCAGCATCT-------------ATCTTCTTCAGCTCTTCAGTTACT
CATAGTTTTGCTGCTGTTGGCTGATCCGCAGGCGGC---GGCCAAGACGTGGTGCGTGGCCAAGCCTTCGACCGGCGAGG
CGGCGCTGAGGGCCAACCTGGAGTTCGCCTGCTCCGAGAGCGACTGCAGCGCGATCCAGGGCACGGGGGGCTGCTCCGCG
CACAACGGCGGCGTGCTGCTGTCGCGGGCGTCGGTGGCCATGAACGCCTACTACCAGGCCAGGGGGAGGAACACCTGGAA
CTGCTTCTTCAACGCCACCGGCATCATCAGCATCACCGACCCCAGTAAGCATACATCGCGCATCTCATCTCATCTCATCT
CATGCCGCCG-TTTCTCAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTGCTCATCTGACCGCTT
CTTTCTTACT-----------TTCCTTCATTGCAGGTCTAGGCACTTGCAAGTATGCATGAGTCCAGTCCAGGGGGTTCA
CTGAAGCCGAGAAAATAAGATGTTTCTAGGATATATGTGTTTGTCCCCTAGAAAATTTAGTGTGTTTCTTTTCACCATCA
CAACTGCCATTGTTCGAATCAGGCATAGCTTCAGTGTTT-GAGTTAACATGAGATGTCCATCCTATGCTTTTTTCTTCTT
TCACAATGAATTATCATTTTAGTTGCCCTAGCGAAG--TTACCAGACCAATCCACGCGACGGATTCTTTAAACTAT--TT
CAGGGTATAGGTGTTACAACACTGAACTTTAATAACTCATCCAGCAAGTGCTCATGGAGTATCAATGCACGCAAGTTAAA
ACAAGACAACATTACTGTCGACAAATCTAGGTTGGAAACTGTCAAGACATTAGGAACTACTCCCTCTGTAAACAAATATA
ACACATTTTAGAGGCTTGTACAAGACATTTTAGAGGCTTGTACAAGAGAGTAAACACCAGAATGCTGGAAATTCATGTCT
CCGCCAACACAGCTTCGGCTACCTGAAATGAAACAAGTTTGAATGGGAGTCAACTAAAGCCGTACCTTCAATATTTAGGA
TACACTGCAAAAACTAAAGCTTGAATGTAAATTTTACAAAGGGCTCAGCGTTCATTTGGTCCCCACTAAACAGTCCCATG
CTAAAAACACAATAACTA----------GATAGACTACTATTATACTGACTAAGGATACCATCCAAACTTACATGCATAA
ATTGCTAATCTTAAATTG--CTAATCTGGCTTCTTCAAATTTATACAGTTGTCTGTAGCTTCATTAAACAACACTTCAAC
CCTTTGCAATTCCAGTTCTGTGAAAGGAACAAGATATATAATACATCAGCTGTTAATCCGCTATACCATGATAAGAAGTG
CAAAATTCAAAAATGTTACCAGCAGCTTCAAGTTGTTTCTGAAGCTCCAATCCCACAACTTCGTTCTCTGCCTGCAAATT
TCAAGTTTACATGATTTGATTGCAGGACAAAAACAAGG
>chr7B_3
--CGGAACTCCAGTGGCGACTGTGTGGAGGAGGGCCAACAGAGAAGAGAAGGGGTCTGGTCGGGCAAGGGATGGACATGA
GTGAATTGGCGTAGGCCCTAGCGGTCAGTTTGACATGGCGGGCGTGTCCAGGTATCCCCATATCCGCCCCAGATATGGCC
TAGGAATGGTAGGTGTCGGTCAGTCTGGGCATTTGGGGCGGATATGTGGCGCCCAGTTGGGTAATGATTTCCTATCCGTG
CGTTTAGGGGTATGGGGGTCCGGCTGTAGATGCTCTCATGGAGTTGTGTGGAAATTACCCAGTGATGTCACCGGTAAGTG
CATACTCCTTTGTTTTATTTTCCCAGT-CAGCAAGCCAAATAGACATTTTTCACCAAAATTTCTGATTCTTGAAGGTAGA
GTTAGTTGAAAACAAAACACAATAAACTGCTTTTTGATGAAGCTGCAACTTCTGAATGAAACTGATTCAAACTGGATTTG
ATGGAGTGGAGCGGTTTCAAACAAGGCCTAACTATGGTAGTCTTGTTGGAAGTTTA---GCATACCTGATAAGTACTCCC
TTGATTCCTAAATATATAAGTGAACCTATACTCTAAAAGGCGTCTATATACATTTGAATGTAGTTTTTATAGTGAAATAT
GTAAAAAGACTTATATTTAGGAATGGAGGTAGTATGAACCAAGATTGCTAGCAGTATACTGACAGAACTGAGTTTGTCAG
GCGTGTCGTGGAGATACCGGGCGTACATGGCGGGTAGTGCTTTTTCTAACCGTGCTTGTGTCG--TTTTTTATTTTCGCG
TCCCTTCTCAAAGCGTAGTCGT------------------------AACAGAAGAAACGGAGGCGTTTTGGCGAGATATA
TAAATGCGGCAAAGCCGCAATCAATGCTGG-GCATAAATTGGATTTGGTATTTCCTTCTTTTTGCGGTGAACCGCTTGTG
CAGCACACCCTTTCTGCTTCGGCTTCCCCCA---TCTTCTTCGTCTGCATATATACACGCACAC--CGCCACGCCGCGAG
CATGAACGAAACAGTCGCTCACAAGACGGCAGCACAGACCTCTGCC-------------------TCCTCACATATAGCA
TAGAGAAAACAGTTTCTTGCGTCCTCTCTCACCGTCACAAGAAAGAGATGGGTTCAGGTTCAACCACCGTCGGACTCATG
GCCTTGGCCTCCGCTCTCGTGCTACTGACGCACTGCACTCACGGTACAATCACTCCTCAATCTCATCTGCATCCTCA---
------AGATTTTCCGAATTCCGTGGCAAAATCTTACTGCAGATGGTGCTCCTTCACTGCTTAGTCTCTGATCTATTTAT
-----AGTTCTTAACATCGATCGATTCTTG----TGTGGCAAATTCTTTCAGCGGCAGCGGCACCAAGCTTTCAGCAGAA
ACAGGTGAGAGGCATTCTCCTGACCGATCGCCTATCAGCATCT-------------ATCTTCTTCAGCTCTTGAGTTACT
CAATTGCTT-----TGTTGGCTGATCCGCAGGCGGCGGTGGCGAAGACGTGGTGCGTGGCCAAGCCATCGACGGGCGAGG
CGGCGCTGAGGGCCAACCTGGAGTTCGCCTGCTCCCAGAGCGACTGCAGCGCGATCCAGGGCACGGGGGGCTGCTCCGCG
CTGAACGGCGGCGTGCTGCTGTCGCGGGCGTCCGTGGCCATGAACGCCTACTACCAGGCCAGGGGGAGGAACTCGTGGAA
CTGCTTCTTCAACGCCACCGGCATCATCAGCATCACCGACCCCAGTAA-----------GCATCTCATCTCATCTCATCT
CATGCCGCCGATTTCTCAAA--------------------------------TCTCTCTCTTGTGCTCATCTGACCGCTT
CTTTCTTCCCTAATAATTTCCTTCCTTCCTTGCAGGTCTAGGCACTTGCAAGTATGCATGAGCCCAGTCCAGGTGGATCG
CTGAAGCCGAGAAAATAAGATGTTTCTAGGATATATGTGTCTGTCCCCTAGAAAGTTTAGCGTGTTTGTTTTCACCATCA
GAACTGCCATTGTTCGAATCAGGCATAGCTTCAGTGTTT-GAGTGATCATAAGATGTCCATCCTATGCTTTTTTCTTCGT
TCCCAATGAAATATCATTTCAGTTGCCCTGGTGAT--------------------GCGACAGATTCTTCGTTTCAGAATT
CAGGGTATAGGTGTTACAACACTGAACTTTAATAACTCATCCAGCAAGTGCTCATGGAATATCAACGCACGCAAGTTAAA
ACAAGACAACATTACTGTCTACAAATCTAGCTTGGAAACTGTCAAGACATTAGGAACTACTCCCTCTGTAAACAAATATA
AGA----------------------CACTTTAGAGACTTGTACAAGAGAGAAAACACCAGAATGCTGGAAATTCATGTCT
CCACCAACACGGGTTCAGCTACCTGAAATGGCACAAATTTGAATGGGAGTCAACTAAAGCCATACCTTCAATATTTAGGA
TAAACTGCAAAAACTAAAACTTGAATGTAAATTTTACAAAGGGCTCAGCGTTCATTTGGTCCCCACTAAACAGTCCCATG
CTATAAC-----------------------TAGTCTATTAATATACTGACCGAGGATACCATCCAAACTTACATGCAT--
-------------AATTG--CTAATCTGGCTTCTTCAAATTTATACAGTTGTCTGTAGCTTCATTAAACAACACTTCAAC
CCGTTGCAATTCCAGTTCTGTGAAAGGAACAAGATATATAATACATCAGCTGTTCATTAGCTATACCATGATAAGAAGTG
CAAAATTCAAAATTGTTACCAGCAGCTTCAAGTTGTTTCTGAAGCTCCAATCCCACAACTTCGTTATCTGCCTGCAAATT
TCATG-TTACATGATTTGATTGCCGGATAAAAACAAGG
>chr7A_822
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------------------------------------------------CAGAAGAAACGGAGGCGTTTTGGCGAGATATA
--AATGCGGCAACCCCGCAATGAATGCTGG-GCATAAATTGGATTTGCTATTTCCTTCTTTTTGCGGTGAACCGCTTCTG
CAGCACACCCTTTCTGCTTCGGCTTCCCCCCTCTTCTTCTTCGTCTGCATATATACACGCACACACCGCCACGCCGCGAG
CATGAACTGAA--------------ACGGCGGCACACACCT-------------TCTCCTCTGCATCCTCACATATAACA
TAGAGAAAACAGTTTCTTGCGTCCTCTCTCTTGGTCACAAGAAAGAGATGGGTTCGGGTTCAACCACCGTCAGGCTCATG
GCCTTCGCCTCCGCTCTCGTGCTGCTGACGCACTGCACTCACGGTACCATCACTCCTCAATCTCATCTGCATCCTCAACT
TGCTCGAGATTCTCCGAATTCCGTGGCAAAATCTCTCTGCAGATGTA-CTACTTTACTGCTTGGTCTCTGATCTATTTAT
ACTGTAGTTTCTAACATCGATCGATTGTTCTCTCTGTGGCGAATTCTTTCAGCGGCAGCGGCACCAAGCTTTCAGCAGAA
ACAGGTGAGAGTCATTCTCCTGACAGACAGCTTATCTTCATCTTGCTCCAGGTGCCATGTTCTTCAGCTCTTGATTTACT
CATAGTTTTGCTGCTG------------CAGGCTGC---GGCCAAGACGTGGTGCGTGGCCAAGCCATCGACGGGCGAGG
CGGCGCTGAGGGCCAACCTGGAGTTCGCCTGCTCCGAGAGCGACTGTAGCGCGATCCAGGGCACGGGGGGCTGCTCCGCG
CAGAACGGCGGCGTGCTGCTGTCGCGGGCCTCGGTGGCCATGAACGCCTACTACCAGGCCAGGGGGAGGAACACCTGGAA
CTGCTTCTTCAACGCCACCGGCATCATCAGCATCACCGACCCCAGTAAGCATCACA--------------CATCTCATCT
CATGCCGCCG-TTTCTCAAA--------------------------------TCTCTCTCTTGTGCTCATCTGACCGCTT
CTTTCTCACT-----------TAACTTCATTGCAGGTCTAGGCACTTGCAAGTATGCCTGAGACCAGGGGGGG----TCA
CTGAAGCCGAGAAAATAAGATGTTTCTAGGATATATGTGTCTGTCCCCTAGAAAGTTTAGTGTGTTTGTTTTCACCATCA
GAACTGCCATTGTTCGAATCAGGCATAGCTTCAGTGTTTTGAGTGATCATGAGATGTCCATCCTATGCTCTTT----CTT
TGACAGTGAAATATCATTTCAGTTACCCTGGTGAACTTTTACCAGACCAATCCACGCAAAGGATTCTTTAAACTAT--TT
CAGGGTATAGGTGTTACAACACTGAACTTTAATAACTCATCCAGCAAGTGCTCATGGAATATCAATGCACGCAAGTTAAA
ACAAGACAACATTACTGTCGACAAATCTAGCTTGGAAGCTGT-AAGACATTAGGAACTACTCCCTCTGTAAACAAATATA
AGACATTTTAGAGGCTTGCACAAGACATTTTAGAGACTTGTACAAGAAAGTAAACACCAGAATGCTGGAAATTCATGTCT
CCACCAACACAGGTGCGGCTACCTGAAATGGCACAAATTTGAATGGGAGTTAACTCAAGGCCTACTTCACTATTTTAGGC
TA---TGCAAAAACA----------------------------------------------------------TCCCGTG
CTGAAAACACAATAACCAATTGATGGTTGATAGTTTACTAATATACCGGGGAAGGATGCCATTCAAACTTACATGCAT--
-------------AATATTACTAATCTGGCTTCTTCAAATTTATACAGTTATCTGTAGCTTCATTAAACAACACTTCAAC
CCGTTCCAATTCCAGTTCTGTGGAAGGAACAATATATATA---CATTAGCTGTTAGTCAGCTATACCATGATAAGAAGTG
CAAAATTCAAAAATGTTACCAGCAGCTTCAAGTTGTTTCTGAAGCTCCAATCCAACAACTTCGTTCTCTGCCTGCAAATT
TCAAGTTTACATGATTTGATTGCAGGATAAAAACAAGG
>SNPs
SS----------------S--------------------------------S--S---------------SS---S----
-S---------S-----------------S----S----S----S----S--S-----------S---------------
---------------S-S-------S---------S----------S---------------SS--------SS------
-----S------------S---------------------------S-----S--------SS----------S------
-------------------SS----SSS--S-S---------S-S-----------------------------------
-S-------------------S-----------------S-----S-----------------------S------S---
----------------S----------------S----------------------SSS-----S---------------
-SS--------------S-S----SS------S-----SS-------------SS----S---------S----S-----
S-S----S-SSSS---S-SS-----------------------S--------S-------------------------S-
------------------S---------------------------------------SSSSSSS----S----------
---------SSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSS----------------------------S-----
----------S---------------S---S-------------------------------------------------
---------------------S---------------------S----------S--------------S-SSSS-SSSS
---------------------------------------------SSSSSSSSS--------------------------
-----------------------------S--------------------------------------------------
-------------------------------------S-----------------S------------------------
--------------------------------------------------------------------S-----------
----------------------------------------------S---------------------------------
-----------S--S---------------------------------------------------------S-------
------------------------------------------------------------------S-----S-------
--------------------------------------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------SSSSSSS---------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------
--------------------------------------------------------------S----------S--S---
----------------------------------------S-------------S------------S------------
S-------------------------------------------S-S---------------------------------
----------S--------S---------S-S---S--------------------------------------------
----------------------------------------------------------S---------------------
------------------------------S-------------------------------------------------
-S----------------S----------------S--------------------------------------------
--S---------S-----------------SS----S------------------------S------------------
--S---------------S-------------------------------------------------------------
----------------S----------------S------S---------S---------------------------SS
SSSSSSSSSSSSS-------------------------------------------------------------------
--S-------------------------------------------------------S---------------------
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---------------------------S----------
>forward_497
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-----------------------------------------------------------------------------TTG
ATGGAGTGGAGCGGTTC---------------------------------------------------------------
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>reverse_1994
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-------------------------------------------------------------------------GGGTTCA
CTGAAGCCGAGAA-------------------------------------------------------------------
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