>input_sequence_66716
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----AGATATATACAGCGGCAGGCAACTGGACCGAGAGCTTCAAAGCTACGCAGGAGTAGCAGAGTGCGGTAGCAAGCCT
TCTCTCAAAAAGAGGT----AGGAGAGCATTTTCGCCGGCCATGGTGACCAGCGGCAGTGGGCAGTTCAAGAGTGCAGGC
CCCGTGTGGAGCCCGAAGAAGTACATCCTGGCGGCCACCACCGTGACCCTCGCCGTGAGCGCCGTGGCCGTGCTGACCAC
CGTGGTCCTCAGCCCCGCGCGCATCGCCTTCTCCGTCACCGGCGCCTCCAGCAGCAGT---GTCGA-------GGGAGCG
TCGTTGGTGGCGCTGAACTTCACCCTCCACGCGGCCAACCCGAGCCGCCGCGCCGGGGTGGAGTACAGCTCCGTCACGGC
CAGGCTTCAGCTCTACAGCGCGAGCCACGCGGCGGCCGCGTGGCTGAAGACGGACGTCCACCAGGCCATGCCGCTCCAGC
AGCCGCCGGCGAGCTCGCG-------CAGCCTCCGCGCGTCGGTCCTCTTCGACTGCAAGGAATTGGGGTGCTGCGG---
------------------------GCGCGCGCCTCCGATGACCGTGCTGGTGCTCGCCCACGTCCGGTTC-AAGGTCGGG
CTGGCCTACTCCCGCCAGTACGACGTCCAGGTCTCCTGCCAGCCCGTCGACTTCTTCGCCGCCACCGCCGCCGCCGCCGC
TACAAGAGTTGTATGCGTTGCCTGACCTCGTCGCCACCGCCACTGCATGT------------------GATATGTCGATC
TAGATTAGTAGTAGTAGTAGTATATATGTA--------TGATGTATCCCCAAATCGATTATATGATGATTTTCTGTGGCA
ATTCTTTTGGTTCTTCTGATCCGGCCGGCAGGATTTCG-AAAATTACAGGATCAAGCTATCTTCGACAA-----------
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>chr7A_1_TraesCS7A01G051500
AGATACTACTCCGCACTCCCTCCTCCAACGACAAGCACACCAACGGAACAAGGAAAGGGGTGGGTGGGTGCAATGATGGT
GGTACAGAGAGGGGAGGACCAAGGCGGGTGGGTGCAGAGAGGAGATGAGAGGTGCTTTTTTCAACGTCAACGCCTTGCTT
AAATATCCGGGGCATGCAGAGTGACGCCATTTTGATATGAGTATGCTTCTTGGTCTGTGCGTCCCCATTGAAGCAGCGCC
GCTCTTCGGCCGTTCACGTCGCTCTGGCCGGTATCGTCCAATCCTGTCCGCTTTGGCTGACTAATTGGCATGAATGCGCT
GCAATGACTTTGGGTGGAGCCGAGCGGGCGGACGGACACGTACCTGTTACCACTTTGATATGCAAGCACACAGAATTCAG
TTTTATTATTATTATTATTATTATTTAGTGATTTACTGTTTATTAGGGAGCATATGAGCTTGGGAGCCCCATACTCCAGG
TCCGGCTAGTTCCCATTTGCGCGCTTTGATTACCCGTTTAGCC--TATGTTCGTTATTTGGTATACATTTATTATTTGTG
GAGCATAGATCTTTCGATAATTTTATGTGGCTATAGTTTTGAAAGTTCACAGATTTTTTAATTCATTTATATGTACATTG
CTGCCTAAAGGTTCAATCTATTTTTGTTTGTCCCCAGCACCCTGATATACACTACCAAACTCGTTTGACATTGAATTTTT
TTAAAAAAAAACTTGTTTGACATTTGCAAAGTGTGCCGCTGATTTAATTAATTATCTTTTTTTTGTTTTCAAGAAAACAA
TATTCTTCTCATGTTTTGTTTCTTCATCTGTATATC--------------------------------------------
---TTTTTGGATCACTCTGTTTCTCTCTCTTCGGT-TGGTATACACTAGTTTCACATTTTCAAAACTTGCAACG------
-------------------------------TTGTGTATTTGTATTGTACCACTGACGC----GTGTCCTTTGAATTTTC
A---------------------------------GTCGAGTGTGGAAAAGTCGGACCGCAGAAACTAAAAGAAGTCATGC
ATGCAGATATATACAGCGGCAGGCAACTGGACCGAGAGCTTCAAAGCTACGCAGGAGTAGCAGAGTGCGGTAGCAAGCCT
TCTCTCAAAAAGAGGT----AGGAGAGCATTTTCGCCGGCCATGGTGACCAGCGGCAGTGGGCAGTTCAAGAGTGCAGGC
CCCGTGTGGAGCCCGAAGAAGTACATCCTGGCGGCCACCACCGTGACCCTCGCCGTGAGCGCCGTGGCCGTGCTGACCAC
CGTGGTCCTCAGCCCCGCGCGCATCGCCTTCTCCGTCACCGGCGCCTCCAGCAGCAGT---GTCGA-------GGGAGCG
TCGTTGGTGGCGCTGAACTTCACCCTCCACGCGGCCAACCCGAGCCGCCGCGCCGGGGTGGAGTACAGCTCCGTCACGGC
CAGGCTTCAGCTCTACAGCGCGAGCCACGCGGCGGCCGCGTGGCTGAAGACGGACGTCCACCAGGCCATGCCGCTCCAGC
AGCCGCCGGCGAGCTCGCG-------CAGCCTCCGCGCGTCGGTCCTCTTCGACTGCAAGGAATTGGGGTGCTGCGG---
------------------------GCGCGCGCCTCCGATGACCGTGCTGGTGCTCGCCCACGTCCGGTTC-AAGGTCGGG
CTGGCCTACTCCCGCCAGTACGACGTCCAGGTCTCCTGCCAGCCCGTCGACTTCTTCGCCGCCACCGCCGCCGCCGCCGC
TACAAGAGTTGTATGCGTTGCCTGACCTCGTCGCCACCGCCACTGCATGT------------------GATATGTCGATC
TAGATTAGTAGTAGTAGTAGTATATATGTA--------TGATGTATCCCCAAATCGATTATATGATGATTTTCTGTGGCA
ATTCTTTTGGTTCTTCTGATCCGGCCGGCAGGATTTCG-AAAATTACAGGATCAAGCTATCTTCGACAAAGAAACCAGGG
AAAGTGGCTCTGC----AAGTAGACCGGTCAGCGCGCAACAATGAGCACGACAGTTACACATAATGAGAATTAGAGGCCT
ACGATGAGTACATTCAGTCTGGTAGGCTGTCACCTCACCACATCGCCGTCAGGGTCTGTTTGGTTCTGATCCTGGAACAT
GTAGCATTCTAGTGGTTGCCAGGCACATGATTAGGGTAATTTGCTGGTCATTGCGGAAAGTTGCCGGCGAATCACACAGA
GGAAGGGAGTGAGACTTTAGCTGGGCCGACCCGTTGTAGCTAGGTTCTGTTACGGCGTCTTTGCCGAATGTATTGCGCCA
GGGACCCGGCAAACAGGTCTTGCCGAGTGTCATTGAAAAAATACTCGTCAAACAAGCGAAACTCGGTAAACATGTGCTTT
GCCGAGTGTCATGGACAAAACACTCAGCAAAACAGTGGAACACAAAAAAAAAAATCTTTCCCGAGTGCTACACTCAGCAA
AAGGGTATCTTTCCCAAGTGCTACACTCGGCAAAAGAGGGTGTTCACTGCGCTGCACTGTCTTGGCTGTCGAAATTGCAT
ACATTTTACATTTTCACGAGATAAAGTTGATCCAAAAATTAAAGTTCATGACATTTGGATAAAGTTTTTGATATTTTACA
TTTTACATTTTACATTTTCACGAGATAAAGTTTATGATAAAGTTGATCCAAAAATTAAAGTTTTTCATTTTCACGAGATA
AATAATTTTCATGTTGAGATCTTTGACAATTTAGGCCATATTAATTACACTTTCTGCCATGCCAAAATATGGTCTCAAAT
GACGAAGGGAGTGATCATATTTATTGCATAGTTTATGACAATGTGCCTAAACTGGGCACTTAGGTTCCAACCTTTTTGTA
CAAAAAATAACCTCCATTTTCTAAGTGTAAAAAATCGATATGTTTGTGAAGCGGGTACAAAAATAGGGTGCAAAATGGCA
CCACTCCGATATTCACATAAAGTAGACCATTTT
>chr7D_433
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--------------------------------TTACTGTTTATTAGGAAGCATATGTGCTCGTTAGCTG-ATACTCGATT
TCCGGCTAGTTCCCATTTGTGCACTTTGATCCCCTGTTTCTCCTATATGTTCGTTATTCTCTATACATTTATTATTTGTG
GAGCATAGATCTTTCGATATTTTTGTGTGGCTATATTATTGAAAGTTCACATATTTTTTTATTAATTTCTATGTATATTG
GTGCCTAAAGGTAGAATCTATTTATGTTTGTATCCAGTACCCTGATATACACCACCACGCTCA-----------------
---------------TTTGACATTTCCAAAGTGTGCAGGTGATTTAATTGATTAACC-TTTTGTGTTTTCAAGAAAGAAA
TCTTCTTCTTGTGTGTTGTTTCTTCATCTATAATTCTATATACAACCTCCGTCTCATAATATTATGGGACGGAGGGAGTA
TCTTTTTTGGATCACTCTGTTTCTCTCTC---------------------TTCACAGTTTCAAAGCTTGCAACG------
-------------------------------T-GTGTATTTGTGTTGTACCACTGGGCC----GTGCGCTTTGAATTTTC
A---------------------------------GTCGAGTGTGGAAAAGTCGGACCGCAGAAACAAAATGATGT----C
ACGCAGATATATACGGCGGCAGGCAACTGGACCATGGCGACGAG---------------GCAGAGTGCGGTAGCAAGCCC
TCTCTCAAAAAGAGG----CAGGAGAGCATTATCGCCGGCCATGGCGACGAGCGGCAGTGGGCAGTTCAAGAGTGCAGGC
CCCGTGTGGGGGCCGAGGAAGTACATCCTGGCGGCCACCACCGTGACCCTCGCCGTGAGCGCCGTGGCCGTGGCGACCAC
CGTGATCCTCAGCCCCGCGCGCATCGCCTTCTCCGTCACCGGCGCCTCCAGCAGCCAGGGGGTGGA-------GGGAGCG
TCGTTGGTGGCCCTGAACTTCACCCTCGAGGCCGCCAACCCGAGCCGCCGCGCCGGGGTGGAGTACAGCTCCGTCACGGC
CAGGCTGCAGCTCTACAGCGCGAGCCACGCGGCGGCCGGGTGGCTGAAGACGGACGTCCACCAGGCCATGCCGCTCCAGC
AGCCGCCGGCGACCTCGCG-------CAGCCTCCGCGCGTCGGTCCTCTTCGACTGCAAGGACCTGGGGTGCTGCGG---
------------------------GCGCGCGCCTCCGATGACCGTGCTGGTGCTCGCCCAGGTCCGGTTC-AAGGTCGGG
CTGGCCTACTCCCGCCAGTACGACGTCCAGGTCTCCTGCCAGCCCGTCGACTTCTTCGCCGCCACCGCCGCCGCTG----
--CAAGGGTTGTATGCGTTGCCTGACTTCGCCGCCGCCGC---------TCGCCTACCTCTAGCTAGCGATATGTCGATC
TAGATTAGTAGTAGTA------TATATGTATGTTGTATTGCTGTATCCCCAAATCGATTATATGACGATTTTCTGTGGCA
ATTCTTTTGGTTCTTCTGATCCGGCCGACAGGATTTCAAAAAATTACAGGATCAAGCTAGCTTCGACAAAGAAACCAGGG
AAAGTGGCGCTGAAATTAAGTAGACCGGTCAGGGCGCAACAATGAGCACGACAGATGCACATAATGAGAATTAGAGG---
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>chr4A_804
TTCTCAATCTTA--------------------------------------------------------------------
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---------------TTTTTCCTTCATCTAT----------------------------------------------GTA
TCTTATTTGGCACCCTCTGTTATTTCCTCTTTGGTCTGGTACACACTAGTTTCACATTTTCAAAACTTGCAACGCGATTC
TGCAAAAAAAAAAATTAAAAAAAATGCGACGT-GTGTATTTGTATATTGTGCAACTGATCCATGTGCCCTTTGAGTTTGC
AAAAGTCGACTGTGGATTTCCCGCAAAGAAAAAGGTCGACTGTGGAACAGTCGGCCAAAAAAAAAAGCGG----------
-CGCTGATATATACAGCGGCAAGACGCCCCACCCTT---------------------------------GTAGCAAGAAG
CCTTCTAAAAAGAAGGTACCAGGAGAGCATTATCGCCGGCCATGGTGACCAGCGGCAGTGGGCAGTTCAAGAGTGCAGGC
CCCGTGTGGGGCCCGAGGCAGTACATCCTGGCGGCCAC------------CGCCGTGAGCGCCGTGGCCGTGGTGACCAC
CGTCGTCCTCAGCCCCGCACGCATCGCCTTCTCCGTCACCGGCGCCTCCATCAGCACT---GTCGA-------GGGAGCG
TCGTTGGTGGCCCTGAACTTCACCCTCCATGCGGCCAACCCTAGCCGCCGCGCCGGGGTGGAGTACAGCTCCGTCACGAC
CAGGCTGCAGCTCTACAGCGCGAGCCACGCGGCGGCCGCGTGGCTGAAGACGGACGTCCACCAGGCCATGCCGCTCCTGC
AGCCGCCGGCGAGCTCGTG-------CAGCCTCCGCGCGTCGGTCCTGTTCGACTGCAAGGAATTGGGGTGCTGCGG---
------------------------GCGCGCGCCTCCGATGACCGTGCTGGTGCTCGCCCAGGTCCGGTTC-AAGGTCGGG
TTGGCCTACTCCCGCCAGTACGATGTCCAGGTCTCTTGCCAGCCCGTCGACTTCTTCGCCGCCACCGCCGCCGTTG----
--CAAGGGTTGTATGCGTTGCCTGACTTCGCCGCCACCACCGACGCCACTCGCCTACCTCTAGCTAGCGATATGTCGATG
GCGAGTGGCGACACGAATAATT----------------------------------------------------------
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-----TTTTCATGTTGAGAACCTTTTCATTTTAGGGCATATTAATTACGCTTTTTGTCATGCCAAAATATGGTCTCAAAT
GACTAAGGCAGTGGTCATATTTATTGCATAGTTTATGACAATGTGCCTAATCTAGGCACTTAGGT---------------
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>chr7A_1155
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--CGTGTGGGGCCCGAAGCACTACATCCTGACGGCCATCGCCGTGACCCTCGCCGTGAGCGCCGTGGCCGTCGTGACCTC
CGTCATCCTCAGCCCCGCGCGCCTCGTCTTCTCCGTGACCGCCACCTCCACCAACCAG---CTCCA-------GGGAGCG
CCGGTGTTGATCCTAAACTTCACCATGGATGCTGCCAACCCGAGCCGCCGCGCGGGGATGGAGTACAGCTCCCTCACGGC
CCGGCTGCGGGTGTACAACGCGAGCCACGGGGCGGACGCGTCCGTGCAGACGGTGGTCCACCAGGCCATGCCGCTCCTCC
AGCCGCCGGCGAGCTGGAGGCTGGAGCAGCTTCCGTGCGTCGGCCTTCTTCGACCTGCGCTTCTTGGTCAGTAACTCCGG
CGGCAACAAGGGCGTCCGTGCCCAGCGGGCGCCTCCCATGAGCGTGCTGGTGAGGGCCCAAGTCCGGTTC-AAGGTCGGG
CTGGCCTACTCCCGCCCGTACGACGTCGAGGTGTCCTGCCAGCCCGTCGACTTCTTCACGGCCGCCGCCGCCGGTA----
--CGAAGGTCGGCTGCGTTGCCTGAC------------------------------------------------------
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>chr7D_1155
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--CGTGTGGGGCCCGAAGCACTACATCCTGGCGGCCATCGCCGTGACCCTCGCCGTGAGCGCCGTGGCCGTCGTGACCTC
CGTCATCCTCAGCCCCGCGCGCATCGTCTTCTCCGTGACCGCCACCTCCACCAACCAG---CTCCAGCCTCCAGGGCGCG
CCGGTGTTGATCCTAAACTTCACCGTGGACGCCGCCAACCCGAGCCGCCGCGCGGGGGTGGAGTACAGCTCCCTCACGGC
TCGGCTGCGGGTGTACAGCGCGAGCCACGGGGCTGCCGCGTCGGTGCAGACGGTGGTCCACCACGCCATGCCGCTCCTCC
AGCCGCCGGCGAGCTCGAG-------CTGCTTCCGGGCGTCGGCCTTCTTCGACCAGAGTTTCGTGGTAGGTAACTCCGG
CGGCAACAATGGCGGCCGGGCCCAGCGGGCGCCTCCCATGAGCGTGCTGCTGAGGGCCCAAGTCCGGTTCAAAGGTCGGG
CTGGCCTACTCCCGCCCGTACGACGTCGAGGTGTCCTGCCAGCCCGTCGACTTCTTCACCGCCGCGGCCGCCG-------
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>chr7B_1155
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--CGTGTGGGGCACGAAGCACTACATCCTGGCGGCCATCGCCGTGACCCTCGCCGTGAGCGCCGTGGCCGTCGTGACCTC
CGTCATCCTCAGCCCCGCGCGCATCGTCTTCTCCGTGACCGCCACCTCCACCAACCAGG----------TCCAGGGCGCG
CCGGTGTTGATCCTAAACTTCACCGTGGACGCCGCCAACCCGAGCCGCCGCGCCGGGGTGGAGTACAGCTCCCTCGCGGC
CCGGCTGCGGGTGTACAGCGCTAGCCACGGGGCTGCTGCGTTGGTGCAGACGGTGGTCCACCAGGCCATGCCGCTCTTCC
AGCCGCCGGCGAGCTCGAG-------CAGCTTCCGCGCGTCGGCCTTCTTCGACCTGCGTCTCTTGGTTAGTAACTCCGG
CGGCAACAAGGGCGGCCGGGCCCAGCGAGCGCCTCCCATGAGCGTGCTGGTGAGGGCCCAAGTCCGATTC-AAGGTCGGG
CTGGCCTACTCCCGCCCGTACGACGTCGAGGTGTCCTGCCAGCCCGTCGACTTCTTCACCCCCGCGGCCGCCG-------
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>chr7A_1157
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----TGTGGGGCCCGAAGCACTACATCCTGGCGGCCATCGCCGTGACCCTCGCCGTGAGCGCCGTGGCCGTCGTGACCTC
CGTCATCCTCAGCCCCGCGCGCATCGTCTTCTCCGTGACCGCCACCTCCACCAACCAGG----------TCCAGGGAGCG
CCGGTGTTGATCCTAAACTTCACCGTGGACGCTGCCAACCCGAGCCGCCGCGCGGGGGTGGAGTACAGCTCCCTCACGGC
CCGGCTGCGGGTGTACAGCGCGAGCCACGGGGCGGACGCGTCGGTGCAGACGGTGGTCCACCAGGCCATGCCGCTCCTCC
AGCCGCCGGCGAGCTCGAG-------CAGCTTCCGTGCGTCGGCCTTCTTCGACCTGCGCTTCTTGGTCAGTAACTCCGG
CGGCAACAAGGGCGTCCGTGCACAGCGGGCGCCTCCCATGAGCGTGCTGGTGAGGGCCCAAGTCCGGTTC-AAGGTCGGG
CTGGCCTACTCCCGCCCGTACGACGTCGAGGTGTCCTGCCAGCCCGTCGACTTCTTCACGGCCGCCGCCGCCG-------
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>SNPs
SSS-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S--------S---S-SS---SSS------S-SS
-------------------S--S-------SS--S----SS-----------------SSS-------------------
-------------------S----S----------S-S-------------S-------S---S----S------S----
S-----------SS---------S-------SS----S--------------S----SS---SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS----------S----------S-S----------S----S-SS----S-------------SS--
-S-------SS---S--------------S--SS----------------------------------------------
-------------------------------S---------S--------------------------------------
--------------------------------S----------------------SSS--------S-------------
-----------------------------------------------------------------S---S--S--SSSS-
-S-------------------------------SS-SSSSSS-SSSSSSSSSSSSSSSS--------------------S
---------------S---------------S------------------------------------------------
---------S--------------------------------------------------------------S-------
--------------------------------------------------------S-----------------------
-----------S--------------------------------------------------------------------
------S-------------------------------------------------------------------------
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------------------------------------------------------------S-------------------
--------------------------------------------------------------------------S-SSSS
SS----S-------------------S---S----------SSS--SSS-------------------------------
----------------S--S-S------------------S------------------------S--------------
---------------------------S---------S---------------------S--------------------
--------S---S-------------------S---------------------S-S--------------------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS--------------S-S--SS--S------S------------S----S--S-----------------------
---S----S----S------------------------------------S--S-----------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_49
-----------------------------GACAAGCACACCAACGGAAC-------------------------------
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>reverse_1173
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----------------------------------------------------AGGAGTAGCAGAGTGCGGTA--------
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>forward_1027
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-----------------------------------------------ATTGTACCACTGACGCGTGT-------------
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>reverse_2414
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-------------CAGGTCTTGCCGAGTGTCAT-----------------------------------------------
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