>input_sequence_66703
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-------------------------------------------------TCGAAAGTCCAAACCACCAGAACTTCCATAA
CAAACTCCC-CCCTGGATTCATCTCGGCCAGAAGCTCGGTTCTTGGCGGCAATGGCAACGGCCGCGCGGAATCTGCCGCC
GGGCCACGCGTTCGAGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCC
CGGGGCACGTCGCAGAGGGCGTGGACGTCTTCTCCGCGAGCCCCGCGGCGCTCCCCTTTCACCCCAGCAGCAGGCGGCGA
CACGGGGAGGCGTGGGGCTACTTCTACGGCGCCCAGGCCGCCGGCGACGCGCGGCCGGCGCCGGGCGGGTGCTGGGCGCG
GTACGGCCGCGAGAAGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGGCGCAGGTTCGCGTTCC
ACGTGCCGCGGCAGGGCTGCGACGGCCGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAG
GGCGCGGCCGCCTTCCGCGCCGCGCAGCCCGGCCCCAAGGCGGACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGGC
GGTGGCCGTGGCCCCTCCGACGCCGCCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCCCGACATGGACGAAGAGGACG
ACGGCTGGTACGGCGAAGAGGACCGGAAGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGCGGAAGCGCGCTCGACCTAGC
TGATG---CCGACCGCGCGGGCACGGATGCGC-------------------------GCTCGTGTCTCGCTAGCGCCGCG
TTCCATCGGTCATGAGAACAATCCATGATCGCTGCTGCGTTTATCCTTCGGAGAGCTTTTGATTTG------C-------
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>chr2B_1_TraesCS2B01G375000
ATGCCAACGACAAGAAATATTGCAACAAGTGGGCAGTCAATGGGCGAGTGGTTTGGTCCTCGACTCCTCGTTGAAGCACC
ATAAATAAGTGCAGGAGGCAATCATTGGATCCGACTCCGTAGTCATCAGAGATAAGATGAGGGGGGGGGGGATTAGGCAG
TGGCAATGTGGTCGAAATGATACCATGCGGCCAGTGACGGCTCCAGGAATTTGCAATCGGGTATTCACGAGTATTCATTT
TGCCAAAATCATTGTTGTTTTTTGAAAATTGTATCTGTTTTACCAAAATCAACACTGTTTTGTAAAAATCATGGGTATTC
ACGTGAAGACCCAAGAATACCCTTAGCGTCGCCCCTGCATGCATGCGACGCAAATGAGTCAGTTGCCTAGACTCCATTTA
TCAGTGATGCATGTGGATGCGGACGCGGCCGTGATCATTCGCGCTGCCGAAAATAAACTAATATCTGCTGCTTTTGTAAA
TGTGCTAATGCTAAATATGCTCAACACGGACTGTCGTGTACTTGTTCAGGCTGGTCACAGTGGGGAGGAACTTAGGAGTA
ACATCACACACTCCCATACAACTTTGCTTATGTGGTACGTATTTAATGAAGAGAGAGGTGCTTGTGGTAACTAGCTAAGT
TATCGGAACATCACACACTCCAAGAACAATGAGTCTATAACCTAATAAATACATCGTTGCATGACACTACATAAATGTTC
CTACCCACTATGGAAGTAGTAACATAGTCTAGGGAATTGTGTAAGTTACTAGCTTATGTTCTTGCCCATTGTGACCAGCA
AGAACAACATTTATGCATGTATGT----GAATTGTATTTTCTTTTTCGAAAGA--ATATGATTTACATTTCCTGATCTTA
GTCTACATGTTAACTTTTTTGAGAGGGAAATGCTTTTTTTGCTTCAATGGAAAATCCCGTTAAGGACAGAAAATTGATGA
TAGCCCATG---CCCTACCCCAATACCTCGATCCTAGACCCCTCTCCCCTCGAAAGTCCAAACCACCAGAACTTCCATAA
CAAACTCCC-CCCTGGATTCATCTCGGCCAGAAGCTCGGTTCTTGGCGGCAATGGCAACGGCCGCGCGGAATCTGCCGCC
GGGCCACGCGTTCGAGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCC
CGGGGCACGTCGCAGAGGGCGTGGACGTCTTCTCCGCGAGCCCCGCGGCGCTCCCCTTTCACCCCAGCAGCAGGCGGCGA
CACGGGGAGGCGTGGGGCTACTTCTACGGCGCCCAGGCCGCCGGCGACGCGCGGCCGGCGCCGGGCGGGTGCTGGGCGCG
GTACGGCCGCGAGAAGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGGCGCAGGTTCGCGTTCC
ACGTGCCGCGGCAGGGCTGCGACGGCCGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAG
GGCGCGGCCGCCTTCCGCGCCGCGCAGCCCGGCCCCAAGGCGGACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGGC
GGTGGCCGTGGCCCCTCCGACGCCGCCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCCCGACATGGACGAAGAGGACG
ACGGCTGGTACGGCGAAGAGGACCGGAAGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGCGGAAGCGCGCTCGACCTAGC
TGATG---CCGACCGCGCGGGCACGGATGCGC-------------------------GCTCGTGTCTCGCTAGCGCCGCG
TTCCATCGGTCATGAGAACAATCCATGATCGCTGCTGCGTTTATCCTTCGGAGAGCTTTTGATTTG------CAGTACAT
GGGTTTCTGTAGTTGCAGTCATCACCAAACCCGTAGTTCAGAGAAACTAGTAGAATTGAGAATCTGAATCTGTACGTATC
TTGCGTTGGTTCTGCAACATTTTCTTGATCTTCCTGCTCTTGTATGAACAAGTCAGGAATCCTATGCTTCATAGTTGCAA
CTTTCTTGTATGTTGAAGCAGCAGTTTGTTTGTAAGTGAGTTCTTCACTTATCAATTCTCATGTT-GATGCAGAGTAAAA
ACCCCTCTGCCCCCAATCAACTCGCTGCTAAGTAATCCTTCCTTGTGCAATTGCAGAAATGTGATGCTGGTGACAGAGGG
AACTGTCTTCTGTGACCACCTCATCATTTTTCTGCGACATCAGCTGCTAACTGC--------------------------
---------------------------------------------------------------------ATCCACTGCAA
CAACCTTTTGGTTGCGACTTCTTTTCCAGTATCTTCTCCTTGGAATGAAGCATTAAGG----AGTATCAGCAAGGAATTA
ATTAATACACTCCCAGGCCCAGCTAATCAGCTACTCAAATAACTTTTCC---------------GCATATGCATATCCAA
GTTCTGAGTGCACTTGACAGTTCAAAACAATTATGGCGTGATCCTCAA-GTCAAAAAGAGAAGAAAAAATGTAAACAAAA
TTACTCGTGCATCAAAGCGTCTCTTCACAAGCCAAGCCTCCGTC---------------------CAAACTTCTAACTCA
TGTGGGGAATCATCCTAGCGAAATCAAGTCAAAGGAGACGACTAACTCAGTGACTGCGCGTCTCATCGGGTTCAGAAGCT
TCTGCGGGGCTTTGCTTTCGCGCTTGCAGTAGGCGGCGCAGCCTTGTCGAGGTTGTCCATCACCCCCAGTTCCATGGAGG
CCTTGCTCTTGCGCTTGCCGTGCGGCCCGTCGTCGGCTCTGGACGGGTCGGGTGCCGCTGGCGTCTTGTGCTTGAACCGG
ACCAGCAGGATGGTCATGTTGTCGACCGACGGTTGCGGTGGCTCTACGCACATGTCGAGGATGGCCTCGCAGTTCTTCCC
AAGGTCCATC
>chr2D_797
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----------------------------------------------------------------------------AGCA
AGAACCACATTTATGCATGTATGTATGCGACTTGTATTTTCTTTTTTCGAAAGAGATATGATTTACATTTCCTGATTTTA
GTCGACATGTTACCTTTTTTGAGATGGAGATGTTTTTTT-GCTTCAACGGAAAATCCCGTTAAGGACAGAAAATTGATGA
TAGCTCATCGCCCCATACCCAATACCTTCCATCTTAAACCCCTCTCCCCTCCAAAGTCCAAACCACCCGAACTTCCCTAA
CAAACTTCCACCCTCGATTCATCTCGGCCAGAAGCTCG-TTCTTGGCGGCAATGGCAACGGCCGTGCGGAGTCTGCCGCC
GGGCCACGCGTTCGAGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCC
CGGGGCACGTCGCGGAGGGCGTGGACGTCTTCGCCGCGAGCCCCGCGGCGCTCCCCTTCCACCCCAGCACCAGGCGGCGG
CACGGGGAGGCGTGGGGCTACTTCTACGGCGCCCAGGCCAGCGGCGACGCGCTGCCTGCGCCGGGCGGGTGCTGGGCGCG
CTACGGCCGCGAGAAGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGAAGCAGGTTCGCGTTCC
ACGTGCCGCGGCTGGGCGGCGACGGCGGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAG
GGCGCGGCCGCCTTCCGCGCCGCGCAGCCCGGCCCGAAGGCGGACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGCC
GGTGGTGGCGCCCCCTCCGCCGCCGGCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCTCGGCGTGGACGAGGAGGACG
ACGGCTACTACAGCGAAGAGGACCGGAGGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGCGGAAGCGCGCTCGACCTAGC
TGATG---CCGACCGCGCGCGCACGGGTGTGGGGATCGTGGTCCATCCGGACGACTGGCTCGTGTCT------CGCCGCG
TTCCATCGGTCATGAGAACAATCCAGGATCGCTGCTGTGTGTATCGTCCTGAAAGCTTTTGATTTAGCGTA------CAT
GGATTTCGATAG-TGCAGTCATCACCAAACCGC-AGTTCAGAGAAACTGGTAGAGCTGAGAATCTGAATCTGCACGTATC
TTGCGCTGGTTCTGCAGCATTTT---GATTTGCTTGCTCTTGTATGAAATAGTTCAGGAAAC-ATGCTTCAGGGTTGCAG
TTCTCTTGTATGTTGAAGTAGCAGTTTGTTTGTAAG--AGTTGTTCACTAGCCAATTCTCATCGTCGATGCAGAGTAAAA
GCCCCTCTGTCCCCAATCAACTCTCTGCTTAGTAATCCTTCCTAGTGCAGTTGCAGAAATGTGATGCTGGTCACAGAGGG
AACTGTCTTCTGTGACCACCTCATCATTTTCCTGCAACATCAGCTGCTAATTGC--------------------------
---------------------------------------------------------------------ATCCACTGCAA
CAATCTTTTGGTTGCGATTTCTTTTCCAGAATCTTCTTGTCGGAATAACTAAT---------------------------
----------------------------------------------------------CAGTGAGCATATGCATATCCAA
GTTCTGAATGCAGTTGACAGTTCAAAAGAATTATGGCGTGATCCTCAAAGTCAAAAAGAGAACAAAAAATGTAAAGAAAA
TTACGCGTGCATCCAAGCGTCACTTCACAAGCCAAGCCTCCGTCTCGCCTCCGTCCCCGGCACGACAAACTTCTAACTCA
TGTAGT--ATCATCCTAGCGAAATCA-GTCAAAGGAGATCACTAACTCTGTGACTGCGTGGCTCATCGGGTTCAGAAGCT
TCTGCGGGGCTTTGCTTTCACGCTTGCAGTAGGCGGCGTAGCCTTGTTGAGGTTGTCCATCACCCCCTGTTCCATGGAGG
CCTTGCTCTTGCGCTTGCCGTGCGGCCCGTCGTCGGCTCGGGACGGGTCGGGTGCCGCTGGCGCCTTGTGCTTGAACCGG
ACCAGCAGGATGGTCATGTTGTCGACCGACGGTTGCGGTGGCTCTACGCACATGTCGAGGATGGCCTCGCAGTTCTTCCC
AAGGTCCATC
>chr2A_797
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----------------------------------------------------------------------------AGCA
AGAACCACATTTATGCATGTATGTATGCGACTTGTATTTTCTTTTTTCGAAAGAGATATGATTTACATTTCCTGATTTTA
GTCGACATGTTACCTTTTTTGAGATGGAGATGTTTT-TT-GCTTCAACGGGAAATCCCGTTAAGGACAGAAAATTGATGA
TAGCTCATCGCCCCATACCCAATACCTTCCATCTTATACCCCTCTCCCCTCCAAAGTCCAAACCACCCGAACTTCCCTAA
CAAACTTCCACCCTCGATTCATCTCGGCCAGAAGCTCG-TTCTTGGCGGCAATGGCAACGGCCGTGCGGAGTCTGCCGCC
GGGCCACGCGTTCGAGCCCAGCGGCCACCAGATCATCACGCAGTACCTCGCACCCAAGGCGCTCCGGGGCGACGCCACCC
CGGGGCACGTCGCGGAGGGCGTGGACGTCTTCGCCGCGAGCCCCCCGGCGCTCCCCTTCCACCCCAGCAGCAGGCGGCGG
CACGGGGAGGCGTGGGGCTACTTCTATGGCGCCCAGGCCAGCGGCGACGCGCGGCCGGCGCCGGGCGGGTGCTGGGCGCG
GTACGGCCGCGAGAAGGGGTACGTGCACGGCGCCGGCGCGGCCGCGGAGGCGGTCGCGTTCCGAAGCAGGTTCGCTTTCC
ACGTGCCGCGGAAGGGCTGCGACGGCGGGGCGGCGTGGGCGCCGACGCCGTGGCTGATGAAGGAGTACCGGCTCAACAAG
GGCGCGGCCGCTTTCCGCGCCGCGCAGCCGGGCCCCAAGGCGAACATGGACTGCGTGGTCCGCAAGATCTTCACGAAGCC
GGTGGTGGCGGCCCCTCCGCCGCCGGCTTGCAGCTCCGACGAGGAGGACTCCAGCGGCCCCGACATGGACGAGGAGGACG
ACGGGTGGTACGGCGAAGAGGACCGGAAGCGCGTCGGCTGCTCCATCGAGGGCCCGCCGAGGAAGCGCGCTCGACCTAGC
TGATGATGCCGACCGAGCGCGCACGGGTGTGGGGATTGTGATCCATCCGGACGACTGGCTCGTGTCT------CGCCGCG
TTGCATCGGTCATGAAAACAATCCAGGATCGCTGCTGCGTTTATCCTTCGGAGAGCTTTTGATTTACAGTAACAGTACAT
GGGTTTCTGTAGTTGCAGTCATCACCAAACCCGTAGTTGAGAGAAACTGGTAGAGCCGAGAATCTGAATCTGTACGTATC
TTGCATTGGTTCTGTAACATTTT---GATCTGCTTGCTCTTGTACGAATAGTTCAGGAATCATATGCTTCAGGGTTGCAG
TTCTCTTGGATGTTGAAGTAGCAGCTTGTTTGTAAGAGAGTTTTTCACTTATCAATTCTCATGTT-GATGCAGAGTAAAA
CCCCCTCTGTCCCCAATCAACTCTCTGCTAAGTAATCCTTCCTTGTACAATTGCAGAAATGTGATGCTGGTCACAGAGGG
AACTGTCTTCTGTGACCACCTCATCATTTTCCTGCAACACATTGGTTGCGATTTCAGAAATTGCAGAAATCAGCTACTCG
TTGGAAGATTTCTTTTCCAGAATCTTCTCGTGAGCATATGCATATCCAATTGCAGAAATCTTCTCATCAATCCACTGCAA
CAATCTTTCGGTTGCGATTTCTTTTCCAGAATCTTCTCGTTGGAATGAAGCATTAAGGAGTAAGTATCAGCAAGGAATTA
AT----ACACTCCCAGGCCCAGCTAATCAGCTACTCAAATAACTTTTCCGAATGCATCCAGTGAGCATATGCATATCCAA
GTTCTGAATGCACTTGACAGTTCAAAACAATTATGGCGTGATCCTCAA-GTCAAAAAGAGAACAAAAAATGTAAACAAAA
TTACTCGTGCATCA-------------CAAGCCAAGCCTCCGTC---------------------CAAACTTCTAACTCA
TGTGGGGAATCATCCTAGCGAAATCAAGTCAAAGGAGACGACTAACTCAGTGACTGCGTGGCTCATCGGGTTCAGAAGCT
TCTGCGGGGCTTTGCTTTCGCGCTTGCAGTAGGCGGCGCAGCCTTGTTGGGATTGTCCATCACCCCCAGTTCCATGGAGG
CCTTGCTCTTGCGCTTGCCGTGCGGCCCGTCGTCGGCTCTGGACGGGTCAGGTGCCGCTGGCGCCTTGTGCTTGAACCGG
ACCAGCAGGATGGTCATGTTGTCGACCGACGGTTGCGGTGGCTCTACGCACATGTCAAGGATGGCCTCGCAGTTCTTCCC
AAGGTCCATC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
-----S------------------------S---------------SSS--SS-----------------------S---
---S--------S-----------S---S---S------S-------S--------------------------------
----S---S-----S-----S-SSS-S--S---S--S--------------S---------------S--------S---
------S-------S-----------------------S-------------------------S-----S---------
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-------------S------------------S-------------------------S--------------------S
---------------------------------------SS---------------------------------------
---------------------------------------------------------------SS---------------
--------------------------S-----------------------------------------------------
------------------------------------------------------------------------------S-
-----SS-S----------S-----S----------------------------------------------S-------
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-------------------S------S--S-S-----------------------------------SSSSSS-------
-------------------------S---------------------------------------S--------------
------------------------------------------------S-----SS------------------------
-----------------------SSS-----S-S--------------S----------------------SS------S
S-S---------------S-----------------S-----S-------------------------------------
S--------S-------------S-----------------------------------------------S--------
------------------------------S----S--------------S-----------------------------
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---S-------------S-----------S--------S-----------------------------------------
--SSSS--------------------------------------------------------------------------
-------S------------------------------------------------------S-----------------
---------------------S----------------------------------------------------------
----------------------------------------------------------S-S-------------------
-----------------------------------------------S--------------------------------
---------------------------------------------------------------S----------------
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>forward_81
-------------------------------------------------------------GACTCCTCGTTGAAGCACC
A-------------------------------------------------------------------------------
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>reverse_1055
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--------------GGATTCATCTCGGCCAGAAG----------------------------------------------
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>forward_211
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-------------------------------CAGTGACGGCTCCAGGAATT-----------------------------
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>reverse_1673
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------------------------------------------------------------------------AGAGGACG
ACGGCTGGTAC---------------------------------------------------------------------
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>forward_987
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-------CCATGCCCTACCCCAATACC-----------------------------------------------------
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>reverse_2662
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---------------------TCTTCACAAGCCAAGCCTCC---------------------------------------
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