>input_sequence_66679
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---------------------------------------------------------------ATGGAGCAGGGGGAGGA
GGACGGGGACTGGATGGTGGAGCCGGCGGCGGGGAAGAAGGGCGGGGCGATGATCGACCGGAAGAAGCGCTTCAGCGAGG
AGCAGATCAAGTCGCTCGAGTCCATGTTCGCCACGCAGACAAAGCTGGAGCCCCGGCAGAAGCTGCAGCTGGCCCGGGAG
CTCGGCCTGCAGCCGCGCCAGGTCGCCATCTGGTTCCAGAACAAGCGCGCGCGCTGGAAGTCCAAGCAGCTCGAGCGCCA
GTACGCCGCGCTCCGCGACGACTACGACGCGCTCCTCTCCAGCTACGACCAGCTCAAGAAGGACAAGCAAGCGCTCCTCA
ACCAGGTATGT----------CTCTACTCTACTACGTACCAGGTGTTAGTTTCGCCGTGCTCTCCGGCCGGTGGCGGCGT
GCGCCGTGTGCTGGTGGTGCCTGTGGCTAATGCGCGGTCGACGGGT--------------TCCGTGCAGCTGGAGAAGCT
GGCGGAGATGCTGCGGGAGCCGGGCGGGGCCAAGTGCGGAGATAATGCCGGCGCGGCCGCCAGGGACGACGAGCGCCTGG
CCGTGGCCGGCATGAGCATGAAGGACGAGTTCGTGGACGCCGGCGGGGCCAGCAAGCTCTACTCGGCGTCCGAGGGCTGC
GGCGGCAGCGGCAAGCTCTCGCTCTTCGGCGAGGAGGACGACGACGCGGGCCTCTTCCTCCGGCCCTCGCTGCAGCTGCC
AACCGCGCACGACGGCGGCTTCACGGCGTCGGGGCCGGCCGAGTACCAGCAGCAATCGCCGTCGTCGTTCCCGTTCCACT
CGAGCTGGCCGTCGTCCGCGGCGGAGCAGACCTGCAGCAGCTCCCAATGGTGGGAGTTCGAGTCCCCGAGCGAGTAG---
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>chr5A_1_TraesCS5A01G316800
AAAAAAGTACCGATGATCACTGCGAGCGTCCAGACACTGCACTAAGGTCAAAAGATCGAGGGCAAGATTTGATGTAAATA
GAAGCGGCAGTACCCAAGGCACCCGC-------------------GCGCGCTCCGGTGTCGATGCCGCGCGCGCGTTCTC
CAGTCCCCACACGTACGGGACACGAGCCGCACATACAGAACCGGCAGCAGCGGGCGGGGCGCCGAGATCACCACGCGCAG
GTGCAGTGCACGGTGACTCCGTGCGT----CGTGCGTCGTACCACGCCCAGCCCCGGCCGTCGCCGTA-------CCACT
GCCTCCGAGGCCCTGGCGGCAGCGTACGGAGCCTAGCAGGGCAGGTGCGTGGCCCGTCACGGCGACGCGACGCCACCGCC
GATCCGACACGTCCCGCCACCGCGCGATTCCCCGAGTCCCAGCTAA------------CCAACACGCCCCGCGCACGCAA
CTCAAAAAA-CGCGACGCCACTCCAGAGCACCAACCGTGCGCGCTCTGCTCGCTCGACGTGGCACGTAC-----------
-GCGCCGTGCGGCGTACGTGGCCGCCAGCTTA------------------------------------------------
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-----------------------CTAACACACGCCAGGGAGGGATCATGTCAGGAGGAGCAGCTC---------------
---AGCCTAAGCAGGCTAGGTGCGCTCCCAAGTCCTCCCCCCGCCCGGCCCAGCGACAGCGACGCCGGCCGGGGCGTGCG
GGGCCGCGCGCCCGAT-CGGGCTCCATCCATCGCCTAGCTGCACCTACAGCTATAGAGAGA--------------GAGGA
GAGGAGAGACCCGGCTACGCATGCACGCCACCGCGCTCCATTGGCCGCCCCGTTGCCATCACCGCGCCCATCGCCCCATC
CTCCGATTAAACTAGTCCATCGCTAGTAGTAAGCAGAATCGATCGATC----ACAGCAAGCTAGCCTCCCAGCTCGCTCT
CGCACACCTGCGATCCGTCGTCCTCCATTAGCTCCTCCTCTTCCCCTTGCCCCTCCAGATCAGGTGCATGACCGCG-CGC
GCGCTCAGGTGGCC---GGCGAGACCTAGC----TA------------GGGAGGTAGGGGGCGATGGAGCAGGGGGAGGA
GGACGGGGACTGGATGGTGGAGCCGGCGGCGGGGAAGAAGGGCGGGGCGATGATCGACCGGAAGAAGCGCTTCAGCGAGG
AGCAGATCAAGTCGCTCGAGTCCATGTTCGCCACGCAGACAAAGCTGGAGCCCCGGCAGAAGCTGCAGCTGGCCCGGGAG
CTCGGCCTGCAGCCGCGCCAGGTCGCCATCTGGTTCCAGAACAAGCGCGCGCGCTGGAAGTCCAAGCAGCTCGAGCGCCA
GTACGCCGCGCTCCGCGACGACTACGACGCGCTCCTCTCCAGCTACGACCAGCTCAAGAAGGACAAGCAAGCGCTCCTCA
ACCAGGTATGT----------CTCTACTCTACTACGTACCAGGTGTTAGTTTCGCCGTGCTCTCCGGCCGGTGGCGGCGT
GCGCCGTGTGCTGGTGGTGCCTGTGGCTAATGCGCGGTCGACGGGT--------------TCCGTGCAGCTGGAGAAGCT
GGCGGAGATGCTGCGGGAGCCGGGCGGGGCCAAGTGCGGAGATAATGCCGGCGCGGCCGCCAGGGACGACGAGCGCCTGG
CCGTGGCCGGCATGAGCATGAAGGACGAGTTCGTGGACGCCGGCGGGGCCAGCAAGCTCTACTCGGCGTCCGAGGGCTGC
GGCGGCAGCGGCAAGCTCTCGCTCTTCGGCGAGGAGGACGACGACGCGGGCCTCTTCCTCCGGCCCTCGCTGCAGCTGCC
AACCGCGCACGACGGCGGCTTCACGGCGTCGGGGCCGGCCGAGTACCAGCAGCAATCGCCGTCGTCGTTCCCGTTCCACT
CGAGCTGGCCGTCGTCCGCGGCGGAGCAGACCTGCAGCAGCTCCCAATGGTGGGAGTTCGAGTCCCCGAGCGAGTAGTGG
TCGGTCAAGCACTCAAGCACCATACAAGGAATCGCCGACGTGATCGGCCATGCAACAAGATCAGTGCTCGTAAC----AC
AGAGCACTACCGCCGATCAATCAAATCCGTGGAGAAGACGACGCGATCGATCGATCAT----ATGCAACCGATG------
GTGGTACGGTGTCAGTGTGTAGTGTACATAGCTCGAAACCCAGGTCTGTCCAGTCCAGGCCAGGCCAGGCAGTCTCCTCC
TTCTCAATCAGCAGTCAGTCAGCACGCCATTTTTCTTCACCCTCGTCCTCTTCTTCAATTACTTGCTCTTGTCAATTACC
CGC---CACACCGTGTAATCCGTCGAAACTACTCACAAAACCAAACTTATAGAGATCGATCTTCAGATGCAAGTGCATGC
GACTAGCCAG----GCAAATATACATGCATGGCTGTTCATCATGCATGGTGGCCAGTTAATAAGCTTTCTCTCTTCTCTT
GCTGTGCATGATCAATTGGTTCCTCGGGACGCAACACAATGATTGCGAGATCATGGCTGACTGGAATATGTAGCGAGCTA
GATTGAGGAGAAGCATGTGGGGGAAAGCTAGAGAGGTCCAGGCTGCTGGATCGATCGATCAAGATTCTTTCACGAGCAGG
AGAAGGAGAAGGGGAATCGAACAACACACTCATCACTAGCTAGTGACCAGTACAGCACTGCGGTACGGGGTAGTACAGGC
CAGGCCAGGGTGGCACAGATCACAGAACGTGCATCCGGCCATTGTTAATTTCAGGCGAATGCATGGCAAGAGACGCGCCG
TTTAGATCAGCCAAAAAAATA----TATCAAAAGGGAGGTCGATCTGTGGCGTACTGTAGCCTGGATTTTGATAACCAAT
GAACGATCGCTGGGAGAACATGGCAAAACACACGTTTTTGGGGGCAAATAATGTTGTCGTGACAATGGAAATTTTCTTTA
GCAAGCATGAAAAATCCATGGAGTTCAGTT-TTTTTTACCAGGATTGTTGTTCTTGCTAAAGG
>chr5B_1
AAAAAAGTACCGATGATCACTGCAAGCGTCCAGGCACTGTACTAAGGTCAAAAGTTCGGGGGCAAAATTTGATGTAAATA
GAAGCGGCAGTACCCGAGGCACCCGCGCTTTGGCACGGCGCGTCCGCGTGCTCCGGTGTCGATACCGCGCGCGCGTTCTT
CAGTCGCCACACGTACGGGACACGAGCCGCACAGACAGAACCGGCAGCAGCGGGCGGGACGCCGAGATCCCCACGGCACG
GTGCGGCGCACGGTGACTC----CGTACGTCGTGCGTCGTACCACGCCCAGTCCTGGCCGTCGCCGTA-------CCACT
GCTCCCGAGGCCCTGGCGGCGGCGTACGGAGCCTAGCAGGGCAGGTGCGTGGCCTGTCACGGCGACGCGACGCCACCGCC
GATCCGACACGTCCCGCCACCGCGCGATTCCCCGAGTCCCAACCAACCAGCCAACCAGCCAACACACCCCGCGCACGCAA
CTCAAAGAAACGCGACGCGCCGG--GAGCACCAACCGTGTGCGCTCTGCTAGCTCGACGTGGCACGTACGCGCCGCGCGC
GGCGCCGTGCGGCGTACGTGGCCGCCAGGCTAGTCATAGTGGGAGTAACTTAGCAAGTAACATAGCGCACTTCAAGAATT
TTTTGCTTATGTGGCATGTAGTTAATGAGAAGTGGTAACATACTCCTTCTGTCTAGGTGTGTAAATCATCTTACGAAAAT
CAAATAATCCCAAAATACTTAGGCGCGGTACATTAACTCTCATTTCGTTTCTTGTTTCGTGACATATCAACCAATAAGAG
ATGTGGGCCATGCATGCTTTAAATGATTTGAGACTATCAAACACGGACATGCATTGGTTAGTTCATTGCATGCATTGTTA
TTAATTAGCAAAATCACATTAAGTTCTCTCGTTTTCCCCTCCACCTTGGTCATGGTGCGCAACGTAAAATGACTTACACA
CCTAGACGGAGGGAGTAATATGTTACTGTAACATAGCGCTTTTCAAGACAAGATGAGTCTAAAAGCTAATTAATGAAGTC
CTTTATGACACTACTACTATATTACTTTGCACTATGAAGATAGTAACTTAGACTAGTGACATATGTATGACACTAGTCTA
AGTTACTCCCCAGTATGACCAGCCTAACAGACGCCAGGGAGGGATCATATCAGGAGAAGCAGC------------TAAGC
CTAAGCCTAAGCTGGCTAGGTGCGCTCCCAAGTCTTTGCCCCGCCCGGCCCAGCGACAGCGACGCCGGCCGGGGCGTGCG
GGGCCGCGCGCCCCGCCCGGGCTCCATCCATCGCCTAGCTGCACCTACAGCTACAGCTATAGAGAGAGGAGAGGCGAGGA
GACGAGAGACCCGGCTACGCATGCACGCCACCGCGCTCCATTGGCCGCCCCGTTGCCATCACCGCGCCCATCGCCCCATC
CTCCGATTAAACTACTCCATCGCTAGTAAGCAGA-------ATCGATC----ACAGCAAGCT------------------
CGCGCACCTGCGATCCG---TCCTCCATTAGCTCCTCCTCTTCCCCTTGCTCCTCCAGATCAGGTGCATGACCGCG-CCC
GCGCTCAGGTGGCC---GGCGAGACCTAGCTAGGTA------------GGGAGGGAGGGAGCGATGGAGCAGGGGGAGGA
GGACGGGGACTGGATGATGGAGCCGGCGGCGGGGAAGAAGGGCGGGGTGATGATCGACAGGAAGAAGCGCTTCAGCGAGG
AGCAGATCAAGTCGCTCGAGTCCATGTTCGCCACGCAGACCAAGCTGGAGCCCCGCCAGAAGCTGCAGCTGGCCCGGGAG
CTCGGCCTGCAGCCGCGCCAGGTCGCCATCTGGTTCCAGAACAAGCGCGCGCGCTGGAAGTCCAAGCAGCTCGAGCGCCA
GTACGCCGCGCTCCGCGACGACTACGACGCGCTCCTCTCCAGCTACGACCAGCTCAAGAAGGACAAGCAAGCGCTCGTCA
ACCAGGTATGTACTACTATGTCTCTGCTCTACTACGTACCATGTGTTAATTTCGCCGTGCTCTCCGGCCGGTGGCGGCGT
GCTCCGTGTGGTGGTG---CCGGTGGCTAATGCGCGGTCGACGGGTTCTTGCTTTGCCTGTCCGTGCAGCTGGAGAAGCT
GGCGGAGATGCTGCGGGAGCCGGGCGGGGCCAAGTGCGGAGATAATGCCGGCGCTGCCGCCAGGGACGACGTGCGCTTGG
CCGTGGCCGGCATGAGCATGAAGGACGAGTTCGTGGACGCTGGCGGGGCCAGCAAGCTATACTCGGCGTCCGAGGGCTGC
GGCGGCAGCGGCAAGCTCTCGCTCTTCGGCGAGGACGACGACGACGCGGGCCTCTTCCTCCGGCCCTCGCTGCAGCTGCC
AACCGCGCACGACGGCGGCTTCACGGCGTCGGGGCCGGCCGAGTACCAGCAGCAGTCGCCGTCGTCGTTCCCGTTCCACT
CGAGCTGGCCGTCGTCCGCGGCGGAGCAGACCTGCAGCAGCTCCCAATGGTGGGAGTTCGAGTCCCCGAGCGAGTAATGG
TCGGTCAAGCAC--------CATAGAAGAACTCGCCGACGTGATCGATCATGCAACG-GATCAGTGTTCGTAAC----GC
AGAGCACTACTGCCG-----TCGAATCCGTGGAGAAGAGGACGCGATCGATCGATCATATGCATGCAACCGATG------
GTGGTACGGTGTCAGTGTGTA-----CATAGCTCGAAACCCAGGTCTGTCCAGTCCAGGCCAGGC-----AGTCTCCTCC
CTCTCAATCAG----CAGTCAGCACGCCATTTTTCTTCACCCTCTTCCTCTTC---AATTACTTGCTCTTGTTAATTACT
ACCTGGCACACCGTGTAATCCGTCGAAATTAGTTACAAAACCAAACTCATAGAGATCAATCTTCAGATGCAAGTGCA---
-ACTAGCTAGCTAGGCAA----ATATGCATGGCTGTTCATCATG-----TGGCCACTTAATAAGCTTTCTCTCTTCTCTT
GCTGTG----ATCATTTGGTTCCTTGGGACGCAACACAATGATTGCGAGATCATGGCTGACTGGAA----TAGCTAGCTA
GATTGAGAAGAAGCATGT-GGGGAAAGCTAGAGAGGTCCAGGCTGCTA--------GATCAAGATTCTTTCACGAGAA--
-----GAGAAGGGGAATCGAACAACACACTCATCACTAGCTAGTGACTAGT--AGCACTGCAGTACGGGATAGTACAGGC
CAGGCCAGGGTGGCACAGATCACAGAACGTGCATCCGGCCATTGTTAATTTCAAGCAAATGCATGGCAAGAGACGCGCCG
TTTAGGTCAGCCAAAATATACTCATGCCTTTTT-----------------------------TGGATTTTGATAACCAGC
GAACGTTCGCTGGGAGAGCATGGCAAAACGAACGTTTTTAT-GGCAAATAATGTTGCCGTGAGGATGACAAATTTCTTTA
GCAAGCATGAAAAATCCATGGAGATCAGTTATTTTTTGTCAGGATTGATGTGCTTGCTAAAGG
>chr5D_61
GGCAAA-----------------------------------------------------------GATTTGATGTAAATA
GAAGCGGCAGTACCCGAGGCACGGCGCGCT--------------CGCGTGCTCCGGTGTCGATACCGCGCGCGCGTTCTC
CAGTCCCCACACGTACGGGACACGAGCCGCACAGGCAGTACCGGCAGCAGCGGGCGGGACGCCGAGATCACCACGGCCCG
GTGCGGCGCACGGTGACTC----CGT----CGTGCGTCGTACCACGCCCCGTCCCAGCCGTCGCCGTGCCACTGTCCACT
GCCTCCGAGGCCCTG-CGGCAGCGTACGGGGT---------CAGGTGCGTGGCCTGTCACGGCGACGCGACGCCACCGCC
GATCCGACACGTCCCGCCACCGCGCGATTCCCCGAGTCCCAA--------CCAACCAGCCAACACACCCCGCGCACGCAA
CTCAAAAAAACGCGACGCCACTCCAGAGCACCAACCGTGCGCGCTCTGCTAGCTCGACGTGGCACGTAC-----------
-GCGCCGTGCAGCGTACGTGGCCGCCAGCTTA------------------------------------------------
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-----------------------CTAACACACGCCAGGGAGGGATCATGTCAGGAGAAGCAGCTCAGCCCAAGCCTAAGC
CTAAGCCTAAGCCGGCTAGGTGCGCTCCCAAGTCTCTCCCCCTCCCGGCCCAGCGACAGCGACGCCGGCCGGGGCGTGCG
GGGCCGCGCGCCCCGCCCGGGCTCCATCCATCGCCTAGCTGCACCTACAGCTACAGCTATAGAGAGAGGAGAGGCGAGGA
GACGAGAGACCCGGCTACGCATGCACGCCACCGCGCTCCATTGGCCGCCCCGTTGCCATCACCGCGCCCATCGCCCCATC
CTCCGATTAAACTACTCCATCGCTAGTAAGCAGA-------ATCGATCGATCACAGCAAGCT------------------
CGCACACCCGCGATCCA---TCCTCCATTAGCTCCTCCTCTTCTCCTTGCTCCTCCAGATCAGGTGCATGACAGCACCGC
GCGCTCAGGTGGCCACCGGCGAGACCTAGCTAGGTAGGGAGGGAGGCTGGGAGGGAGGGAGCGATGGAGCAGGGGGAGGA
GGACGGGGACTGGATGATGGAGCCGGCGGCGGGGAAGAAGGGCGGGGCGATGATCGACAGGAAGAAGCGCTTCAGCGAGG
AGCAGATCAAGTCGCTCGAGTCCATGTTCGCCACACAGACCAAGCTGGAGCCCCGCCAGAAGCTGCAGCTGGCCCGGGAG
CTCGGCCTGCAGCCGCGCCAGGTCGCCATCTGGTTCCAGAACAAGCGCGCGCGCTGGAAGTCCAAGCAGCTCGAGCGCCA
GTACGCCGCGCTCCGCGACGACTACGACGCGCTGCTCTCCAGCTACGACCAGCTCAAGAAGGACAAGCAAGCGCTCCTCA
ACCAGGTATCTACCACTATGTCTCTACTCTACTACGCACCATGTGTTAGTTTCGCCGTGCTCTCCGGCCGGTGGCGGCGT
GCGCCGTGTGCTGGTG---CCTGCGGCTAATGCGCGGTCCACGGGTTC----------TGTCCGTGCAGCTGGAGAAGCT
AGCGGAGATGCTGCGGGAGCCGGGCGGGGCCAAGTGCGGAGATAATGCCGGCGCTGCCGCCAGGGACGACGTGCGCTTGG
CCGTGGCCGGCATGAGCATGAAGGACGAGTTCGTGGACGCCGGCGGGGCCAGCAAGCTCTACTCGGCGTCCGAGGGCTGC
GGCGGCAGCGGCAAGCTCTCGCTCTTCGGCGAGGACGACGACGACGCGGGCCTCTTCCTCCGGCCCTCGCTGCAGCTGCC
AACCGCGCACGACGGCGGCTTCACGGCGTCTGGGCCGGCCGAGTACCAGCAGCAGTCGCCGTCGTCGTTCCCGTTCCACT
CGAGCTGGCCGTCGTCCGCGGCGGAGCAGACCTGCAGCAGCTCCCAATGGTGGGAGTTCGAGTCCCCGAGCGAGTAGTGG
TCGGTCAAGCAC--------CATACAAGGAATCGCCGACGTGATCGGCCATGCAACAAGATCAGTGCTCGCAACACATAC
AGAGCACTACTGCCGA----TCGAACCCGTGGAGAAGACGACGCGATCGATCGATCATAT----GCAACCGATGGTGGTA
GTGGTACGGTGTCAGTGTGTA-----CATAGCTCGAAACCCAGGTCTGTCCAGTCCAGTCCAGGG-----AGTCTCTTCC
TTCTCAATCAG----CAGTCAGCACGCCATTTTTCTTCACCCTCTTCCTCTTCTTTAATTACTTGCTCTTGTTAATTACC
TGC---CACACCGTGTAATCCGTCGAAACTAGTCACAAAACCAAACTTATAGAGATCGATCTTCAGATGCAGGTGCA---
-ACTAGCTAG----GCAA----ACATGCATGGCTGTTCATCATG-----TGGCCACTTAATAAGCTTTCTCTCTTCTCTT
GCTGTG----ATCAATTGGTTCCTTGGAACGCAACACAGTGATTGCGAGATCATGGCTGACTGGAA----TAGCTAGCTA
GATTGAGAAGAAGCATGT-GGGGAAAGCTAGAGAGGTCCAGGCTGCTA--------GATCAAGATTCTTTCACGAGAA--
-----GAGAAGGGGAATCGAACAACACACTCATCACTAGCTAGTGACTCGTACAGCACTGCGGTACGGGATAGTACAGGC
CAGGCCAGGGTGGCACAGATCACAGAACGTGCATCCGGCCATTGTTAATTTCAAGCAAATGCATGGCAAGAGACGCGCCG
TCTAGGTCAGCCTGAAAATATAGAGTATCAAAAGGGAGGTCGATCTGTGGCGTAGTGTAGCCTGGTTTT-----------
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>SNPs
-----------------------S---------S-----S--------------S---S---------------------
---------------S--------------------------------S--------------S----------------
---------------------------------S------------------------S----------------SS-S-
----S-S------------SSSS----------------------------S----------------------------
------------------------------------------------------S-------------------------
-----------------------------------------S-S---------------------S--------------
--------------------------------------------------S-----------------------------
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--------------------------------------------------------S-----------------------
------------S---------------------S-S-------------------------------------------
-------------SSS-------------------------------------S--SS-S--------------------
--S-----------------------------------------------------------------------------
--------------S-------------SSS--SSSSSSSS---------------------SSSSSSSSSSSSSSSSSS
-----------------SSS------------------------------S-----------------------------
------------------------------------------------------S----S--------------------
----------------S-----------------------------------------S---------------------
----------------------------------------S--------------S------------------------
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-----------------------------------------S--------------------------------------
----------------SSS-------------------------------------------------------------
------------------------------------------------------S----------------S----S---
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-----------------------------------S--------------------------------------------
------------------------------------------------------S-------------------------
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------------SSSSSSSS------------------------------------------------------------
----------S-----SSSS--S---------------------------------------------------------
---------------------SSSSS---------------------------------------SSSSS----------
-----------SSSS-----------------------------S----------S----------------S-------
S------------------------------S---------------------------------------------SSS
S------S----------SSSS----------------------SSSSS------S------------------------
------SSSS--------------S-----------------------------------------SSSS----S-----
-------S----------S----------------------------SSSSSSSSS--------------------S-SS
SSSSS------------------------------------------S---------------------S----------
-----------------------------------------------------S--S-----------------------
-----S------------SSS---------------------------------S-----------------------SS
-----S-----------S-----------SS--------SSS--------------S-----SS---SS--S--------
-----------------------S-------------SS--------S---S-----------
>forward_466
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----------------------------------------------AGTCCCAGCTAACCAACACG--------------
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>reverse_2813
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------------AGTCAGTCAGCACGCCATTT------------------------------------------------
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