>input_sequence_66677
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---------------------------------------------------------ATGGGGATCTCCAAAGTGACGGG
CATCGCCGCGACGGCGCTCCTCGTCTCGTCCCTCGCCCTGCGGCAGGCCGGCGTGAGGGCCGCCGCCACGGCCCCCA---
----------------------------------------------TCCTCGCCACCAGCTGCGTCGCCTACGTCGTCAC
CGTCGCGTCCCACACCGCCGTCAACGTGCCGTGGATCCTGGGCAAGACCCCGTCGGGCCGGTTCCCCCTCTGGTCGTCCG
TACTCTTCGGCCCCTTCCTGATGCTGGCACGCACGTACGCCAAGGTGAAGAGGTTCCTCAGGAAGGAGAACGTGTACGAC
GAGATCGCCCAGGGGCTCTACCTCGGGGGCTGGCCGTTCATGGCAAAGCACCTGCCTCCCGGGGATCCGTCCGTCGTGGA
TTGCACGTGTGAGCTGCCGAGGAGCTCGTTTGTGAAGGTGGATGAGTATGTCTGTCTTGCTACTTGGGATACCAGGGCCC
CGTTACCGTCCCAAATCGAATTCGCGGCGCGGTGGGCCTGCGAGAAGAGAGCCCAGGGGAAGCCCGTCTATGTCCACTGC
GCATTTGGTAAGCAATGATCC--CCCCCTCTCTTGTAGTCTTGTTTGCATTCTATTTTCGGCGAACCAT--CGTAGTTTG
GTAATCTTGTTGTATTTAT----AAGTGACACCACATGAAGATAAAATGTCTCTCTGTTTTGTGCATGATTTACAACCAC
ATCAGGTCATGGAAGAAGTGCCTGTGTCATGTGCGCAATTCTAGTGGCGACGGGCGTTGCTGAAAACTGGAAAGACGCTG
AAAACGTCATCCGAGGAAGGAGGAAGATCAAAATGAACGCTCTTCACCGCAAAACTTTGGAAGATTGGTCCAAAAGTCGA
GTTGTCCAGAAAAAGGATAATTAG--------------------------------------------------------
--------------------------------------------------------------------------------
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--
>chr4D_1_TraesCS4D01G129800
ACCCCAAGGAGATCTAGGGTTTCCCCCGGAGTTGCCCGTGCTGTCAAGGACTAGACAAGGGAAGAATCTCTGCGGATCCG
CCCAACTGCCGACGAGCCGCACCCACCACCGTGCCGACGGCAATCCAGTGACCAAGGCCCA---CTGGACCCAGATCCGG
CTGTGTCGCCGCGAACCCATCTGGTCACGCCGCCGCCGTCCCTGGCGACCGCGACGCACCAGACCATGAAGCCGCCTGCC
GCGGGGAAGAGAACCGCCGAAGCGCCGCCATCACCCGCCATGGCGTCCGGCCCGGCGCCACGATCCGGCCCGGGGGCGCT
AGCCCGCGCCAGCCCCACGAGCGGGAGGACCACGAGTCCCCCCCACCGCCGGCAACGGCAAGGCTTCGCCTGGCCGTGCC
CTTGGGCGTCGGCGAGGGAGGAGGAGGAGGAGATGTGGAGACCGGCGGCGATGGGATCTGGGAGCCACCCGGCCGCCACA
CGGGGGGCGACGCGGGGGGCATGTGATGGCTGAAGTGTGTGCCAAAGAGGCTGCATCGAGTTTTGCTCACGTCACGCTGA
CGGTGGATGTAAGAGAAAGAAGACTTTGACCACTCCCAAAGATTTGATTGTAGTTTTATCTTTTTGAAAGGACGTGCCTT
AACCTTTTTTTCCAAAAGAAAAACAGGTGGAGATGGGTCCGCTTTTAAAATTTCTACTTTCCCCCAAAAATCTCCGAACC
CGATTTTTCATTTTTGTGACATGGCAGCAATGTTTCGGTCTCGACCCACCCGACTATGTCGG-------------TCCTC
TTCCTCCGCTCTTCCCGCCTTCTCTTCCTCGCCCGCTCCACCGCATCTCCTCCCCACCACTCTTCCCTCCTCCCGTCTCC
TCGCCCGCACGCCCTCAGCCACCGCCGGTAACTTCTCCACACCCAGATCGCTTCTTGATCCACTCCGATTTCGATTCAAT
AGACATTACCCCCAGACGGATCGACGCCAGATTCCACCTCGGTAACAAAGACA-GCAATGGGGATCTCCAAAGTGACGGG
CATCGCCGCGACGGCGCTCCTCGTCTCGTCCCTCGCCCTGCGGCAGGCCGGCGTGAGGGCCGCCGCCACGGCCCCCA---
----------------------------------------------TCCTCGCCACCAGCTGCGTCGCCTACGTCGTCAC
CGTCGCGTCCCACACCGCCGTCAACGTGCCGTGGATCCTGGGCAAGACCCCGTCGGGCCGGTTCCCCCTCTGGTCGTCCG
TACTCTTCGGCCCCTTCCTGATGCTGGCACGCACGTACGCCAAGGTGAAGAGGTTCCTCAGGAAGGAGAACGTGTACGAC
GAGATCGCCCAGGGGCTCTACCTCGGGGGCTGGCCGTTCATGGCAAAGCACCTGCCTCCCGGGGATCCGTCCGTCGTGGA
TTGCACGTGTGAGCTGCCGAGGAGCTCGTTTGTGAAGGTGGATGAGTATGTCTGTCTTGCTACTTGGGATACCAGGGCCC
CGTTACCGTCCCAAATCGAATTCGCGGCGCGGTGGGCCTGCGAGAAGAGAGCCCAGGGGAAGCCCGTCTATGTCCACTGC
GCATTTGGTAAGCAATGATCC--CCCCCTCTCTTGTAGTCTTGTTTGCATTCTATTTTCGGCGAACCAT--CGTAGTTTG
GTAATCTTGTTGTATTTAT----AAGTGACACCACATGAAGATAAAATGTCTCTCTGTTTTGTGCATGATTTACAACCAC
ATCAGGTCATGGAAGAAGTGCCTGTGTCATGTGCGCAATTCTAGTGGCGACGGGCGTTGCTGAAAACTGGAAAGACGCTG
AAAACGTCATCCGAGGAAGGAGGAAGATCAAAATGAACGCTCTTCACCGCAAAACTTTGGAAGATTGGTCCAAAAGTCGA
GTTGTCCAGAAAAAGGATAATTAGCTGTGAGCTGATTTCTTTTTTACATCATATACTTCTTCTGTGAGGTTAGAACCAAA
ACAGAGTAAAGCCATATT-GTATAGGAATACCATGCCATTCTTTATTTGAAATATTCCTCCACATGTCAATCATGTGTGA
CACAAGGAAATCCTCCATTTCCCCCCTGAAGATGCAGGAAAGTCCTTTTTC-----TACGTGTTTGTTCAATGTATGTGT
GGTAGTTGCTCCTCTAAGCAACTCTTTTCACAGCAAAATCAGTCTTGTGTAGTGTACACTTTGGTTTACAATGGAAGAAA
CTTGAACTTATCCTCAAGCTGGTTTCTATTATCTGTGTTGCAAAATT------GTAGCAAGGTTTAACTTCAAATGACAA
TTCTTTTCTTGTGAGTACTATC----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TAGGTACTAGCCTGCTTGAACCGTACAGATGTAAAAATCAAATGTAGTTTGAAGTT
ATAACTCAACAGCAGTGTGTGCAATATAAGACTCTGAATGAGGTACTAAATTTGATATCTGGAACAGGTTTGTGTACTCA
TGCTCAGAGA---CCCCTTTGTTCCCTCCTAATGATAG-AAAAATTGTGACTGAATGTCACTGTTTCAATATATTTTATC
TAACCTTTTCCCCGTTTTCTGGCAGTGATATTTTTTCCAAATTCTGTCAGATAGCTCACCTATTCAATTCAAGATATTTT
GGTAGTGGTGCATGGTAGAAGGTGTTCTTACAAAATGCAGCCAGAAGTAATGAAAATAACACAAATTGAAGTACCATTTC
AATAATGAACTCTGGGTGTCCTTCATTTGTTCTCACTCCAGGATACATTAAACCATTTGACTCAAGAAAATCTGATGACA
GTTCTACGCGTTCTGACAAGTTCTCCCATTTCTTGAGCTTCCTTTGTTTCCCAGCTCTCTGTTTCTCACATATCTGCTAC
ATTACATCCAAAAAATTTGTTCCCAGTTGTTTTGCTTATGCTCCTACTTTGAAGGTTAGTTCCAAGATACATTTGAATCA
GT
>chr7D_3
CCCAAGA--AGATCTAGGGTTTCCCTCGGAGTTGCCCGCGCTGTCAAGGAA-AGACAAGGGTAGAATCTCGGCGGATCCG
CCCAGCTGCCGACGAGTCGCACCCGCCACCGCGCCAACGGCAATCCAGCGACCAAGGCCCAAGCCTGGGCCCAGATCCGG
CCGTGTCGCCGCGAACCCATCTGGTCACGCCGCCGCCGTCCCTAGTGAGCGCGACGCACCAGATCGCGAAGCCGCCTGCC
GCGGGGGAAACT--------------------------------------------------------------------
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-------------------------------------------------------------------------------G
AATCGCCGAAGCGCCGCCACCACCCGCCAT-------------------GGCGTCCGGCCCGGCGCCACGCTCCGGCCCG
GGGGCGCCGGCCCGCACCAGCCCCACACGAGCGGGAGGACCGCGAGTCCCCGCCGCCGCCGGCGACGGCAAGGCTTCGCC
T--------------------------------------------------------------------------GGCCG
TGCCCTTGGGCGGCGGT---------------------------------------------------------------
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------------GAGGGAGGAGGAGGAGGAGGAGAGGTGGAGTCCGACCGATGGGATCTGGGAGCCTCCCGGCCGCCACG
CGGGGGGC------------------------------------------------------------------------
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------------------------------GACGCAGGGGGC--------------------------------------
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--
>chr4A_715
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-----------------------------------------------------------------------------ACC
CGATTTTTCATTTTTGTGACATGGCAGCAATGTTTGGGTCTCGACCCACCCGACTATGTCGGGGAGTCCCTCCTGTCTTC
TTCCCCCGCTCTTCCCGCCTTCTCTTCCTCCCCCGCTCCACCGCATCTCCTCCCCACCACTCTTCCCTCCTCCCGTCTCC
TCGCCCGCACGCCCTCAGCCACCGCCGGTAACTTCTCCACACCCAGATCGCTTCTTGATCCACTCCGTTTTCGATTCAAT
CGACATTACCCCCAAACGGATCGACGCCAGATTCCACCTCGGTAACGAAGACAAGCAATGGGGATCTCCAAGGTGACGGG
CATCGCGGCGACGGCGCTCCTCGTCTCGTCCCTCGCCCTGCGGCAGGCCGGCGTGAGGGCCGCCGCCACGGCCCCCA---
----------------------------------------------TCCTCGCCACCAGCTGCGTCGCCTACGTCGTCAC
CGTCGCGTCCCACACCGCCGTCAACGTGCCGTGGATCCTGGGCAAGACCCCGTCTGGCCGGTTCCCCCTCTGGTCGGCCG
TGCTCTTCGGCCCCTTCCTGATGCTGGCACGCACGTACGCCAAGGTGAAGAGGTTCCTCAGGAAGGAGAACGTGTACGAC
GAGATCGCCCAGGGGCTCTACCTCGGGGGCTGGCCGTTCATGGCAAAGCACCTGCCTCCCGGGGATCCGTCCGTCGTGGA
TTGCACGTGTGAGCTGCCGAGGAGCTCGTTTGTGAAGGTGGATGAGTATGTCTGTCTTGCTACTTGGGATACCAGGGCCC
CGTTACCGTCCCAGATCGAATTCGCGGCGCGGTGGGCCTGCGAGAAGAGAGCCCAGGGGAAGCCCGTCTATGTCCACTGC
GCATTTGGTTAGCAATGATCCCCCCCTC----------TCTTGTTTGCATTCTATTTTTGGCGAACCATTCT-TAGTTTG
GTAATTTTGTTGTATTTATTTACAAGTGACACCACATGAAGATAAAATGGCTATCTGTTTTGTGCATGATTTACAACCAC
ATCAGGTCATGGAAGAAGTGCCTGTGTCATGTGCGCAATTCTAGTGGCGACCGGCGTCGCTGAAAACTGGAAAGACGCTG
AAAACATCATCCGAGGAAGGAGGAAGATCAAAATGAACGCTCTTCACCGCAAAACTTTGGAAGATTGGTCCAAAAGTCGA
GTTGTCCAGAAAAAGGATAATTAGCTGTGAGCTGATTTCTTTCTTACATCATATACTTCTTCTGTGAGGTTAGAACCAAA
ACAGAGTAAAGCCATATTTGTATAGGAATACCATGCCATTCTTTATTTGAAATATTCCTCCACATGTCAATCATGTGTGA
CACAAGGAAATCCTCCATTACCCCCCTGAAGACGCAGGAAAGTCCTTCCTTTCTTTTACGTGTTTGTTCAATGTATGTGT
GGTAGTTGCTCCTCTAAGCAACTCTTTTCACAGCAAAATCAGTGTTGTGCAGTGTACACTTTGGTTTATAATGGAAGAAA
CTTGAACTTATCCTCAAGCTGGTTTCTATTATCTGTGTTGCAAAATTGTAGGAGTAGCAAGGTTTAACTTCAAATGACAA
TTCTTTTCCTGTGAGTACTATC----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TAGGTACTAGCGTGCTTGAACTGTACAGATGTAAAAATCAAATGTAGTTTGCAGTT
ATAACTCAACAGCAGTGTGTGAAGTATAAGACTCTGAATGAGGTACTAAATTTGATATCTGGAACAGGTTTGTGTACTCA
TGCTTAGAAATTACCCCTTTGTTCCCTCCTAATGATAAAAAA--TTGTGACTGAATGTCAGTGTTTCACTATATTTTATC
TAACCTTTTCCCCATTTT-TGGCAGTGATATTTTTTCCAAATTCTGTCAGATAGCTCACCTATTCAATTCAAGATATTTT
GGTAGTGGTGCATGGTAGAAGGTGTTCTTACAAAATGCAGCCAGAAGTAATGAAAATAACACAAATTGA----------C
AATAATGAACTCTGGGTGTCCTCCATTTGTTCTCACTCCAGGATACATTAAACCATTTGACTCAAGAAAATCTGATGACA
GTTGTACGCATTCTGACAAGTTCTCCCATTTCTGGAGCTTCCTTTGTTTCCCAGCTCTCTGTTTCTCACATATCTGCTAC
ATTACATCCAAAAAATTTCTTCCCAGTTGTTTTGCTTATGCTCCTACTTTGAAGGTTAGTTCCAAGATACATTTGAATCA
GT
>chr4B_715
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-----------------------------------------------------------------------------ACC
CGATTTTTCATTTTTGTGACATGGCAGCAATGTTTCGGTCTCGACCCACCCGACTATGTCGGGGAGTCTCTCCTGTCCTC
TTCCCCCGCTCTTCCCGCCTTCTCTTCCTCCCCCGCTCCACCGCATCTCCTCCCCACCACTCTTCCCTCCTCCCGTCTCC
TCGCCCGCACGCCCTCAGCCACCGCCGGTAACTTCTCCACATCCAGATCGCTTCTTGATCCACTCCGTTTTCGATTCAAT
CGACATTACCCCCAAACAGATTAACACCAGATTCCACCTCGGTAACGAAGAC-AGCAATGGGGATCTCCAAGGTGACGGG
CATCGCCGCGACGGCGCTCCTCGTCTCGTCCCTCGCCCTGCGGCAGGCCGGCGTGAGGGCCGCCGCCACGGCCCCCA---
----------------------------------------------TCCTCGCTACCAGCTGCGTCGCCTACGTCGTCAC
CGTCGCGTCCCACACCGCCGTCAACCTGCCCTGGATCCTGGGCAAGACCCCGTCGGGCCGGTTCCCCCTCTGGTCGGCCG
TGCTCTTCGGCCCCTTCCTGATGCTGGCACGCACGTACGCCAAGGTGAAGAGGTTCCTCAGGAAGGAGAACGTGTACGAC
GAGATCGCCCAGGGGCTCTACCTCGGGGGCTGGCCGTTCATGCCAAAGCACCTGCCTCCCGGGGATCCGTCCGTCGTAGA
TTGCACGTGTGAGCTGCCGAGGAGCTCGTTTGTGAAGGTGGATGAGTATGTCTGTCTTGCTACTTGGGATACCAGGGCCC
CGTTACCGTCCCAGATCGAATTCGCGGCGCGGTGGGCCTGCGAGAAGAGAGCCCAGCGGAAGCCCGTCTATGTCCACTGC
GCATTTGGTTAGCAATGATCA--CCCTC----------TCTTGTTTGCATTCTACTTTCGGCGAACCATTGCGTAGTTTG
GTAATTTTGTTGTATTTATTTGTAAGTGACACCACATGAAGATAAAATGGCTATCTGTTCTGTGCATGATTTACAACAAC
ATCAGGTCATGGAAGAAGTGCCTGTGTCATGTGCGCAATTCTAGTGGCGACGGGCGTTGCCGAAAACTGGAAAGATGCTG
AAAACGTCATCCGAGGAAGGAGGAAGATCAAAATGAACGCTCTTCACCGCAAAACTTTGGAAGATTGGTCCAAAAGTCGA
GTTGTCCAGAAAAAAGATAATTAACTGTGAGCTGGTTTCTTTCTTACATGATATACTTCTTCTGTGAGGTTAGAACCAAA
ACAGAGTAAAGCCATATT-GTATAGGAATACC-TGCCATTCTCTATTTGAAATATTCCTCCACATGTCAATCATGTGTGA
CACAAGGAAATCCTCCATTTCCCCCCTGAAGATGCAGGAAAGTCCTTCCTTTCTTGTACGTGTTTGTTCAATGTATGTGT
GGTAGTTGCTCCTCTAAGCAACTCTTTTCACAGCAAATTCAGTGTTGTGGAGTGTACACTTTGGTTTATAACGGAAGAAA
CTTGAACTTATCCTCAAGCTGGTTTCTATTATCTGTGTTGCAAAATT------GTAGCAAGGTTTAACTTCAAATGACAA
TTCTTTTCCTGTGCGTACTATCTACTCCCTCCGTTCCCAAATATTTGTCTTTCTAGGCATTTCAAATGGACACAACATAC
GGATGTATGTAGACATATTTTAAAGTGTAGATTCACTCATTTTGCTTCGTATGTAGTCACTTGATGAAATCTTTAGAAAG
ACAAATATTTGGGAACGGAGGGAATAGGTACTAGCCTGCTTGAACCGTACAGATGTAAAAATCAAATGTAGTTTGCAGTT
ATAACTCAACAGCAGTGTGTGCAATATAAGACTCTGAATGAGGTACTAAATTTGATATCTGGAACAGGTTTGTGTACTCA
TGCTCAGAGATTACCCCTTTGTTCCCTCGTAATGATAAAAAAAATTGTGACTGAATATCAGTGCTTCAATATATTTTATC
TAACCTTTTCCCCGTTTTCTGGCAGTGATATTTTTTTGAAATTCTGTCAGATAGCTCACCTATTCAATTCTAGATATTTT
GGTAGTGGTGCATGGTAGAAGGTGTTCTTACAAAATGCAGCCAGAAGTAATGAAAATAACACAAATTGAAGTACTATTTC
AATAATGAACTCTGGGTGTCCTTCATTTGTTCTCACTCCAGGATACATTAAACCATTTGACTCAAGAAAATCTGATGACA
GTTCTACGCATTCTGACAAGTTCTCCCATTTCTGGAGCTTCCTTTGTTTCCCAGCTCTCTGTTTCTCACATATCTGCTAC
ATTACATCCAAAAAATTTCTTCCCAGTTGTTTTGCTTATGCTCCTACTTTGAAGGTTAGTTCCAAGATACATTTGAATCA
GT
>SNPs
S--SSS-SS----------------S------------S-----------SS---------S--------S---------
----S-----------S-------S------S---S------------S-------------------S-----------
-S-----------------------------------------S-S--S--------------S-SS-------------
------S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
--------------------------------------------------------------------------------
----S-------------------------S-------------------------------------------------
-------------------------------------------------------------------S------------
S-------------S-------------------------------S------------------------S--------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------S---
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------S------------------------------------------------------------------
---------S----------------S-SSSSSSSSSS------------------------------------------
-----S-------------------------------------------S--S---------------------------
--------------------------------------------------------------------------------
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------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------SS-S-----------------------------
-------------------------------------------S-----S------------------S-----------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------------------------
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---------------------------------------------------------------------------S----
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-------------------------------------S----------------------S-------------------
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--------------------------------------------------------------------------S-----
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---------S-----------------------S----------------------------------------------
------------------S-------------------------------------------------------------
--
>forward_527
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---------------------------GGCTGAAGTGTGTGCCAAAG---------------------------------
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--
>reverse_1627
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--------------------------CCTCTCTTGTAGTCTTGTTTGCA-------------------------------
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--
>forward_573
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-------------------------------------------------------------------------ACGCTGA
CGGTGGATGTAAG-------------------------------------------------------------------
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--
>reverse_1638
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-------------------------------------GTCTTGTTTGCATTCTATTTTCGGC------------------
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--
>forward_574
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--------------------------------------------------------------------------CGCTGA
CGGTGGATGTAAGA------------------------------------------------------------------
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--
>reverse_2556
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---------------------------------------------------------------------------AAGTT
ATAACTCAACAGCAGTGTGTG-----------------------------------------------------------
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--
