>input_sequence_66676
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-------------------------------------------------ATGGCGCTCGGCCGGCCATTGCACTCCAACC
ATCC------TCAGCAGCAGCAGCAGCCAGCGATCGCCACCACAGCACCGGAGAGAGACAGCACGATCGGG----TCACC
GAGCGATCCAGCGATCATCACCGGCCGGTTGATGAGCATGACGGGACTGGGGTCGCCGTGCGGGGCGTGCAAGTTTCTGC
GGCGCAAGTGCGCGCGGGGGTGCGTCTTCGCGCCCTACTTCTGCCACGAGCAGGGCGCGGCCCACTTCGCCGCCATCCAC
AAGGTGTTCGGCGCCAGCAACGTCTCCAAGCTCCTGGCGCACCTGCCCATCGCCGACCGCGCCGAGGCCGCCGTCACCGT
CTCCTACGAGGCGCAGGCCCGGCTGCGCGACCCGGTCTACGGCTGCGTCGCACACATCTTCGCGCTCCAGCAGCAGGTCA
TGACCCTGCAGGCGCAGCTCGCCTCGCTCAAGGCGCACGCCGCGCCGGCGCCGCAAGGGATGCAGCACCAGGACGACGTC
AAGGGCTACGTGGGAGGCGGCGCGGCGGATCAGTACGGGCATGGTGGCGCCTACCAGTGGCACAACGGTCTCGGTGTGGG
CGCGGCGGCCGCGCAGCAGCAGTGCGCGTACGGCGGCAATGGCGGCGCCGCGGCCGGGCACGACTCCATCACCGCGCTGC
TGGCCGGGTCGGCGGCCTCGGACTACATGATGTACCACGCGCTGGAGCAGTCGGCGTCGGACGACGACGGGCATGCCGCG
GCGGCGGGCTTCGAGACGGCGGATCAGTCGTCATTCGGCACGGAGGAGAGCGGGTGGAGGTCGTCGTCGCGGTACCAAGA
CTGCGAGGACCTGCAGAGCGTGGCGTATGCCTACCTTAAGCGCTCGTAA-------------------------------
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>chr4A_1_TraesCS4A01G415400
CGTTTGACCATTTTTCTACTAGTGTGCATGCATGTAATTTATGATAAACATATATAGGTTAGCACCACCTAGCTAGTGAA
GGTGCATTACTGTATTGGCATAGGCCGGCCTAATCTCAGCAAACCTCTAATGGTCAGTGGAAGGCAAAAGAGTTCGGACT
CTTGGTTAGGATAATGAGCTTCTTAACCCTACATGATGCAGAGGCCAGGGCAGGGTCGCAGAAGTTCTGTTGCTCTGTTC
CAATCTTTCCTGCAGGTGCCACATAGTTTAGAGCAGCCGGTGCAGTTTAGGGTACATGTTGGGGCTTCCTTTCCAAAACA
TATTTAAGTGGCATAGATAGATTGGTATATTAGCCCACTGCTAGATTGTTTTTCTCATATGATTGGACATACATGCCTGC
TGATGCCCACGAATATAAATTTGCATACACTTGTGCATATATTTTCCC-TGATAATTTATCAAAGTTGTCTCTGATCCCA
AGGAAAAAGTTCTAAACTAATTTCCCATCACTTATTGTCTCCTGAGGAAAAGAAAGGACCGGAAAATAACACAAACGACA
GCTCCACTTCTGGCCAGGTGATGCATGAAATGCTTGTATATGTATTATCCCCGGGTTTATCAACTGGAGTGTGCTGGCGA
GTCGCGCTGCAACGCATCCCAACTAATCACAAAATAAATCATCGCACGGGCAGGCAGTCACGATAACAACTAAACTAGAA
ACACGAGAGAAAGTTGTGTATAATTGCACACCGGGTGACCTAGCCCCATTGTGGTTTGTCCTTCTCTTGGGATTGGCAGA
GTG--GTGTATAGTATTAGTGTACCTACAGAAAAGAGAGAAAATGGGGGGGCAGAACTTAGCGGGCCGGAGAGGCGAGCG
CGCCATCGGAAGCTCAAAATAATGGAGGCGGTTGGCCACCGGGGAGACACGCCGGAATTGTTTATTCCGCT-GGCCCTAA
TCCCCAACCATGCACCTCCTCCTCCGC-----TCCTCTCCTTATAAGCAATGGCGCTCGGCCGGCCATTGCACTCCAACC
ATCC------TCAGCAGCAGCAGCAGCCAGCGATCGCCACCACAGCACCGGAGAGAGACAGCACGATCGGG----TCACC
GAGCGATCCAGCGATCATCACCGGCCGGTTGATGAGCATGACGGGACTGGGGTCGCCGTGCGGGGCGTGCAAGTTTCTGC
GGCGCAAGTGCGCGCGGGGGTGCGTCTTCGCGCCCTACTTCTGCCACGAGCAGGGCGCGGCCCACTTCGCCGCCATCCAC
AAGGTGTTCGGCGCCAGCAACGTCTCCAAGCTCCTGGCGCACCTGCCCATCGCCGACCGCGCCGAGGCCGCCGTCACCGT
CTCCTACGAGGCGCAGGCCCGGCTGCGCGACCCGGTCTACGGCTGCGTCGCACACATCTTCGCGCTCCAGCAGCAGGTCA
TGACCCTGCAGGCGCAGCTCGCCTCGCTCAAGGCGCACGCCGCGCCGGCGCCGCAAGGGATGCAGCACCAGGACGACGTC
AAGGGCTACGTGGGAGGCGGCGCGGCGGATCAGTACGGGCATGGTGGCGCCTACCAGTGGCACAACGGTCTCGGTGTGGG
CGCGGCGGCCGCGCAGCAGCAGTGCGCGTACGGCGGCAATGGCGGCGCCGCGGCCGGGCACGACTCCATCACCGCGCTGC
TGGCCGGGTCGGCGGCCTCGGACTACATGATGTACCACGCGCTGGAGCAGTCGGCGTCGGACGACGACGGGCATGCCGCG
GCGGCGGGCTTCGAGACGGCGGATCAGTCGTCATTCGGCACGGAGGAGAGCGGGTGGAGGTCGTCGTCGCGGTACCAAGA
CTGCGAGGACCTGCAGAGCGTGGCGTATGCCTACCTTAAGCGCTCGTAAGAACCACTACAACTAGCTAGCGCAGAATTAA
TATATCACCACAAGATATACTCCTCGATCGATGATTTCCTGAATCCTGATCATGTTTTGGACTTGAGAGTTTGAGTTGGG
TAATATATGTGCAATTTTTAAAGTCTGCGTCGATCGATCGATCAATCATGCTCAGGTTCTAGCTAGT-CCTAGCCAGCTA
GTAATAATCCTAGTAGAGGGGTTGTGAGAGTTCACTGCTGGATCTATACATGATCACCGCAGAAAC----CTAGTTGACT
AGACAGCAAAAATGCTTCTTGGTATGATCGTTATGCTATATATTTCTGGTTTGGAAATAAGTTATCTTGTCCGAGTTCTG
TTCTGTATAGTTGTA-ACTGCAGTAGTATTTCTGTATATGATTCGACTTGTCATGCCAGAAATATGTATGTATTGCCAAG
AGAGATGATCAAGCGAACAAGCTAGAAGGCAGTGATGGACAGCTGATATAGTGATAGACAAGCTGATTCAATGGCCGCAC
ATGTAGAAAGTCCAGTTATACAACTGTTTTCATCGACTAGCTAGCTCCTCCAACTCTTTTACGGGACCTATCTTATCTTG
TACTGCCTTTCTAAAGATTCCTATATGGATCTGATATTGAAG---TAGTACGTGTTGGTATAATCTAGTATCTATTTGAC
TCGCAAGAGTAGTATATATAGCTAGCTTTTTACATGCGATGATGCTGCAGTATACAATCCTTAATCATGATCCGCTTAAT
CGTTCGGTGTAATTATGCTTAGACTGTGATCCTA-AAAAATATTGTCAAATGCATGTA-TTTTCCAGTATAATTCGTAGA
AATTCTTTCTGAGGTTCTCTGGGAGATTATTTGATGTGAACTAAGATCATATTATTCTTGTTTCTATATATTTCTTGTCC
CTTCAAAGTGGGTG-GGGTGATTAAGAACATAACTG-TGAGGTTGTGACATTGTTTTTTCTATAATATACTTGAATAACG
TACAGGACTGGGAATGTTGGGG
>chr4B_25
TGCTG-------------------------CATGTAATTTAGTGATAAGC---ATGGGTTAGCACCACCTAGCTAGTGAA
GGTGCATTACTGTATTGGCATAGGCCGGCCTAATCTCAGCAAACCTCTAATGGTCAGTGGAAGGCAAAAGAGTTTGGACT
CTTGGTTAGGATAATAAGCTCCTTAACCCTACATGATGCAGATGCCAGAGCATGGTCGCAGAAGTTCTGTTGCTCTGTTC
CAATCTTTCCTGCAGGTTCCACTTAGTTTAGAGCAGCCGGTACAGATTAGGGTACATGTTGGGGCTTCCTTTCCAAAACA
TATTTAAG--------------TGGTATATTAGCCCACTGCTAGATTGTTTTTCTCATATGATTGGACATACATGCCTGC
TGATGTGCACGAATATAAATGTACATACACTTGTGCATATATTTTCCC-TGCTAATTTATCAAAGTTGTCTCTGATCCCA
AGGAAAAAGTTCTAAATTAATTTCCCATCACATATTGTCTCCCGAGGAAAAGAAAGGAGCTGAAAATAACACAAACGACA
GCTCCACTTCTGGCCAGGTGATGTATGAAATGCTTGTATATGTATTATCCCCGGATTTATCAACTGGACTGTGCTGGCGA
GTCGCGCTGCAACCCATCCCAACTAATCACAAAAGAAATCATCACACGGGCAAGCAGTCACGATAACAACTAAACTAAAA
ACACGAGAGAAAGTTGTGTATAATTGCAC-CCGGATGACCTAGCCCCATTGTGCTTTGTCCTTCTCTTGGGATTGGCAGA
GTG--GT--ATAGTATTAGTGTACCTACAGAAAA---------TGGGAGGGCAGACCTTAGCGGA----AGAGGCGAGAG
CGCCATTGGAAGCTCAAAATAATGGAGGCGGTTGGCCACCGAGGAGACACGCCGGAATTGTTTATTCCCTCAGGCCCTAA
TTTCCAACCATGCACTCTTTCCCCCTTCCTCTTCGTCTCCTTATAAGCAATGGCGCTCGGCCGGCCATTGCACTCCAACC
ATCATCATCATCATCAGCAGCAGCGAT----------CACCACGACACCGGAGAGAGACAACACAATCAGTTCCATCACC
GAGCGATCCAGGGATCATCACCGGTCGGTTGATGAGCATGACGGGACTGGGGTCGCCGTGCGGTGCGTGCAAGTTTTTGA
GGCGCAAGTGCGCGCGCGGGTGCGTCTTCGCGCCCTACTTCTGCCACGAGCAGGGCGCGGCGCACTTCGCCGCCATCCAC
AAGGTGTTCGGCGCCAGCAACGTCTCCAAGCTCCTGGCGCACCTGCCCATCTCCGACCGCGCCGAGGCCGCCGTCACCGT
CTCCTACGAGGCGCAGGCCCGCCTCCGCGACCCCGTCTACGGCTGCGTGGCACACATCTTCGCACTCCAGCAGCAGGTCA
TGACCCTGCAGGCGCAGCTCGCCTCGCTCAAGGCGCACGCCCCGCCGGCGCCGCAAGGCGTGCAGCACCAGAACGACGTC
AAGGGCTACGTGGGAGGCGGCGGGGCGGATCAGTACGCGCACGGCGGC---TACCAATGGCCCAACGGCAACGGCGTGGG
CGCGGCGGCCGCACAGCAGCAGTGCGCGTACGGCGGCAATGGCGGCGCAGCGGCCGGGCACGACTCCATCAGCGCGCTGC
TGGCCGGGTCGGCGGCATCGGACTACATGATGTACCACGCGCTCGAGCAGTCGGCGTCCGACGACGACGGGCATGCCGCG
GCGGCGGGCTTCGAGGCAGCGGACCAGTCGTCGTTCGGGACGGAGGAGAGCGGGTGGAGGTCGTCGTCGGGGTACCAAGA
CTGCGAGGACCTGCAGAGCGTGGCCTATGCGTACCTTAATCGCTCGTAAGAACCACTACAACTAGCTAGTGCAGAATTAA
TATAT---CACAAGATATACTCCTCGATCGATGATTTCCTGAATCCTGATCATGTTTTGGGCTTGAGAGTTTGAGTTGGA
TAATATATGTGTAATTTTTAAAGTCTACGTCGATCAGTCGATCAATCATGCTCAGGTTCTAGTCCTTACCTAGCCAACTA
GTAATAATCCTAGTAGAGGGGTTGTGAGAGTTCACTGCTAGATCTATACATGATCACCGCAGGAACCTAGCTAGTTGACT
AGACAGCAAAAATGCTTCTTGGTACGATCAATATGCTATATATTTCTGGTT-GGAAATAAGTTATCTTGTCTGAGTTCTG
TTCTGTATAGTTGTGTACAGCAGTAGTA-TTCTGTATATGATTCGACTTGTCATGCCATAAATATGTATGTATTGCCAAG
AGA--TGATCAAGAGAACAAGCTAGAAGGCAGTGATGGACAGCTGATATAGTGATAGACAAGCTGATTCAATGGCCGCAC
ATGTGGAAATTCCAGTTATACAACTGTTTTCATTGACTAGCTAGCTCCTCCAGTTCTTTTACGGAACCTATCTACTCTTA
TACCGCCTTTCTAAAGATTCCTA--TGGATCTGATATTCAAGTACTAGTACGTGTTGATATAATCTAGTAG---------
----------------TATAGCTAGCTTTT-ACATGCGATGATGCTGCAGTATGCAATCCTTAATCATGATCTGCTTAAC
CCTTTGACGAAATTATGCTTAGACTGTGATCCTC-CAAAATATTGTCAAATGTATGTCTTTTTCCAGTATAATTCGTAGA
AATTCTTCTGAGTTTTTTCTTGGAGACTATTTGATGTGCACTAAGATCGTATTGTTCTTGTTTTTATATATTTCTTGTCC
CTTCAAAGTGGGTGGGGGTGATTAAGAACATAACTCTTGAGGTTGTGGCATTTTTTTTTC-----TATACTTGAATAACG
TACAGGACTTAGAATGTTGGGG
>chr4D_29
----------------------------TGCATGCAATTTAGTGATAAGC---ATGGGTTATCACCACCTAGCTAGTGAA
GGTGCATTACTGTATTGGCATAGGCCGGCCTAATCTCAGCAAACCTCCAGTGGTCAGTGGAAGGCAAAAGAGTTTGGACT
CTTGGTTAGGATAATAAGCTCCTTAACCCTACATGATGCAGATGCCAGAGCAGGGTCGCAGAAGTTCTGTTGCTCTGTTC
CAATCTTTCCTGCAGGTGCCACTTAGTTTAGAGCAGCCGGTACAGATTAGGGTACATGTTGGGGCTTCCTTTTCAAAACA
TAGTTAAGTGGC----ATAGATTGGTATATTAGCCCACTGCTAGATTGTTTTTCTCATATGATTGGACATACATGCCTGC
TGATGTGCACGAATATAAATGTACATACACTTGTGCTTATATTTTCCCTTGCTAATTTATCAAAGTTGTCTCTGATCCCA
AGCAAAAAGTTCTAAATTAATTTCCCATCACATATTGTCTCCGGAGGAAAAGAAAGGAGCTGAAAATAACACAAACGACA
GCTCCACTTCTGGCCAGGTGATGTATGAAATGTTTGTATATGTATTATCCCCGGGTTTATCAACTGGACTGTGCTGGCGA
GTCGCGCTGCAACGCATCCCAACTAATCACAAAATAAATCATCACACGGGCAAGCAGTCACGATAGCAACTAAACTAAAA
ACACGAGAGAAAGTTGTGTATAATTGCGC-CCGGATGACCTAGCCCCATTGTGCTTTGTCCTTCTCTTGGGATTGGCAGA
GTGGTGT--ATAGTATTAGTGTACCTACAAAAAA---------TGGGAGGGCAGGCCTTAGCGGA----GGAGGAGAGCG
CGCCATTGGAAGCTCAAAATAATGTAGGCGGTTGGCCACCGGGGAGACACGCCGGAATTGTTTATTCCCTTAGGCCCTAA
TCCCCAACCATGCACTCCGCCTCCCTTCCTCTTCCTCTCCTTATAAGCAATGGCGCTCGGCCGGCCATTGCACTCCAACC
ATCC------TCAGCAGCAGCAGCGAT----------CACCGCGACACCGGAGAGAGACAACACAATCAGTCCGATCACC
GAGCGATCCAGCGATCATCACCGGTCGGTTGATGAGCATGACGGGACTTGGGTCGCCGTGCGGAGCGTGCAAGTTCTTGC
GGCGCAAGTGCGCGCGCGGGTGCGTCTTTGCGCCCTACTTCTGCCACGAGCAGGGCGCGGCGCACTTCGCCGCCATCCAC
AAGGTATTCGGCGCCAGCAACGTCTCCAAGCTCCTGGCGCACCTGCCCATCTCCGACCGCGCCGAGGCCGCCGTCACCGT
CTCCTACGAGGCGCAGGCCCGCCTGCGCGACCCCGTCTACGGCTGCGTCGCACACATCTTCGCGCTCCAGCAGCAGGTCA
TGACCCTGCAGGCGCAGCTCGCCTCGCTCAAGGCGCACGCCCCGCCGGCGCCGCAAGGGATGCAGCACCAGGACGACGTC
AAAGGCTACGTGGGAGGCGGCGCGGCGGATCAGTACGCGCACGGCGGC---TACCAATGGCACAACGGCAACGGCGTGGG
CGCGGCGGCCGCGCAGCAGCAGTGCGCGTACGGCGGCAACGGTGGCGCCACGGCCGGGCACGACTCCATCAGCGCGCTGC
TGGCCGGTTCGGCGGCGTCGGACTACATGATGTACCACGCGCTGGAGCAGTCGGCGTCGGACGACGACGGGCATGCCGCG
GTGGCGGCCTTCGAGGTGGCGGAGCAGTCGTCGTTCGGGACGGAGGAGAGCGGGTGGAGGTCGTCGTCGGGGTACCAAGA
CTGCGAGGACCTGCAGAGCGTGGCGTATGCGTACCTAAATCGCTCGTAAGAACCACTACAACTAGCTAGCGCAGAATTAA
TATATCACCACAAGATATACTCCTCGATCGATGATTTCCTGAATCCTGATCATGTTTTGGGCTTGAGAGTTTGAGTTGGG
CAATATATGTGCAATTTTTAAAGTCTACGTCGATCAATCGATCAATCATGCTCAGGTTCTAGTCCTAGCC-AGCCAGCTA
GTAATAATCCTAGTAGAGGGGTTGTGAGAGTTCACTGCTGGATCTATACATGATCACCGCAGAAAC----CTAGTTGACT
AGACAGCAAAAATGCTTCTTGGTATGATCAATATGCTATATATTTCTGGTT-GGAAATAAGTTATCTTGTCTGAGTTCTG
TTCTGTATAGTTGTGTACTGCAGTAGTA-TTCTGTATATGATTCGACTTGTCATGCCATAAATATGTATGTATTGCCAAG
AGA--TGATCAAGAGAACAAGCTAGAAGGCAGTGATGGACAGCTGATATAGTGATAGACAAGCTGATTCAATGGCCGCAC
ATGTGGAAAATCCAGTTATACAACTGTTTTCATGGACTAGCTAGCTCCTCCAACTCTTTTACGGAACCTATCTACTCTTA
TACCGCCTTTCTAAAGATTCCTAT--GGATCTGATATTGAAG---TAGTACGTGTTGGTATAATCTAGTAG---------
----------------TATAGCTAGCTTTT-ACATGCGATGATGCTGCAGTATGCAATCCTTAATCTTGATCTGCTTAAT
CCTTCGACGAAATTATGCTTAGACTGTGATCCTCCAAAAATATTGTCAAATGTATGTCTTTTTCCAGTATAATTCGA---
-------------GTTTTCTTGGAGACTATTTGATGTGCACTAAGATCGTATTGTTCTTGTTTATATATATTTCTTGTCC
CTTCAAAGTGGGTGGGGGTGATTAAGAACGTAACTG-TGAGGTTGTGGCATTTTTTTTTCT---ATATACTTGAATAACG
TACAGGACTTAGAATGTTGGGG
>SNPs
S-S-SSSSSSSSSSSSSSSSSSSSSSSS-------------SSSSS--SSSSS--S------------------------
--------------------------------------------------------------------------S-----
---------------S----S---------------------S-----S-------------------------------
----------------------S------------------S---S----------------------------------
------------SSSS----------------------------------------------------------------
-----SS-------------S-S----------------------------S----------------------------
----------------S--------------S----------S---------------S-S-------------------
-----------------------S--------------------------------------------S-----------
-------------------------------------------S--------S------------------------S--
-----------------------------S----S------------------S--------------------------
-------SS-------------------------SSSSSSSSS----S-------S--------SSSSS-----------
------S-------------------------------------------------------------SS----------
---------------SS-S---S--SS-----------------------------------------------------
------------------------SSSSSSSSSSSSS------SS---------------S---S---S-S---------
------------------------S--------------------------------------S------------S---
----------------S--------------------------------------------S------------------
---------------------------------------------------S----------------------------
---------------------S-----------S----------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------S---S--S---SSS-----S-----------SSS---S-----
-----------------------------------------------------------------------S--------
----------------S---------------------------------------------------------------
---------------S-------S--------S-----S------------------------------S----------
------------------------------S--------S----------------------------------------
------------------------------------------------------------S-------------------
--------------------------S--------S--------------------------SSSS--------------
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-----------------------------SS--------------------S-------------------S--------
--------------S-------------S-----------------------------S---------------------
---SS--------S------------------------------------------------------------------
----S----S-----------------------S------------------------------S--------SS----S
---S--------------------S---------------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSS--------------S----------------------S------------------S-------
-S----SS-S-----------------------S------------------S----S----------------------
-------SSSSSS---S---S-----S-----------S---------S----S---------S----------------
-----------------------------------------------S----S--------SSS----------------
---------SS-----------
>forward_808
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--------------------------------------------------------------------TTGGGATTGGCA
GAGTGGTG------------------------------------------------------------------------
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>reverse_1830
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---------------------------------------------------------------------CGGTACCAAGA
CTGCGAGG------------------------------------------------------------------------
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>forward_1109
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-------------------------------------------------GGAGAGAGACAGCACGATCG-----------
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>reverse_2591
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------------------------------TACATGCGATGATGCTGCAG------------------------------
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