>input_sequence_66660
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-------------------------------ATGGACCCCTTCTCCGAGATCACCTTGACGCTTCCTAACCTATCTTCTT
TCTGTCTTGTGGATGAGCCTGTTGCAATTATTAATGGTCG---TGATGTCCTGGATGAAGACATGTCTTGTCCTCTGCTA
CAGATGGATACTGCGATATTTCTGCGCAAGGTAATCAGGTGCTCGGAACTCCTTGTTGCTGCCATCGTTGAAATTGGGCC
TCTTTTCACTGTTGCGTACTGCCAACCGGGTTCAACCTCATGGTTGGTGAGTGAACTTGGCAGCATAGGGTCGGTCATAG
ACATGATGTTCTATGAAGGTATGTTGTATGTCATTGATGAGTTCAACGACCTTTTGGCAATCAATGTCAGAGAGGACAAT
GATAATGGCAAGTTAAGGGTATCTCGGATCGAGCGTCTACTTGATGGTGCCCCCTGTGTCTTAAAGTTGATCCAAGGTGG
CATCTCTTACTTCGAGTCGTATCTAGTTGAATCTCATGGTGCACTACTGCTGGTACAGAGAACAATATTTGGTGAATGTG
ATAATGACACGATTGGTGGTATCAAGCC---AGTAGGGATTGAATTTGAGGTGTGTCAGTCAGACTTCCAGTCTCGAAGT
TGGGAGAAGGTGAGCAGTGTTGGGGGTGACCAGACATTGTTCGTCAGCCAAAGTTCATCCCAATCTGTTGACGTGTCTCA
GTACAAGCTGAAGGGGGATTGCATCTACTTCCTGGATGATGGCAGCTGTGACTGGTTCTGGAAGGATGCGCCAAGTTCTT
GTGCCGTATATGACATGCGAGATGGAAACTGTTTCTTCATACCACTGCCGACAGTAGCATGCAAGGACGTCAAAATGCTA
GCGGCGTGGCTTTTCCCTCAGAACTGA-----------------------------------------------------
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--------------------------------------------------------------------
>chr1D_1_TraesCS1D01G038600
AAAAGTCTCACAGCCTCACGTGTATATATACACGCCTAACCAGGAGCAATCCTAACCAAAGCCTACTTGGACTCGGCCTA
AACTAAACCTATACGGCTAAACTTCCTAATACAAAAACTAAACCTGAACCTAGACGGACACAAAGTCCTACTTCTAGCTG
GACTATA-------------------------------------------------------------------------
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----------------------------------------------------------------------CTACTACTCG
CGTATAGACGCAACTTAACCAGCTAGCTAAACTAGCATGGACTCCTATACCACCAGCTCGTTCTTGACTCAACTAGGAAA
CTATCCTATCCTACATGTGCCAGGACTTGACCAAACCTAATAATCAAGATTATTTCTAACAGCCCATAGGTTAATTCAGA
AGAGGCTATCTTTTGTTTTT--CCAGAACAGAG-------GGTTTCTTCCTCTTGCAGTACAAACTGAAACATTTCTAGA
TTTGATTTTTTTA-TTCACGAGTGGAAACACGTAATGCAATGTGATTAGCTGTTCTGGATTTCCTACTTGTGTGGAAAAG
ATTTGGCTTTCTGATGACGCATCAGGCAAGAAACTTGAAATGAAAAAAGAGAATCCTATTGATGATTTCCTC--------
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-------------TTAAACTGTGAAATTCTAGAAGCA---TA---ATCA--CATTAGATTTGTGGTCTCTGCCT------
-------------CTG----------------------------ATCTCG-TTGTGGTAATCTTATGATTC-AAGCCTGA
CAAGTATTCTTTACTTCTGTGAAGCAGATGTCGTTTGCCAAGAAGCTGAAGACACACCATACACAATCATGGTCAGCCCT
GCCATCAGAGCTTGCTGGTCTGGTCCTTCGTCGCCTCCCTTCCCACGCTGACCGTGTGCGCTTCGCTGCTGTATGTCACC
ATTGGCGTTTCTCCACACAAGAGCATTGCCTGACCCAACCTTTACCATGGCTTGCATTTCCTGATGGTACCTTCTTCGTC
TTTCCCCATGGAGAAGCGGCAAAAGAATCCTTCAAGCTCCACAGCAGTGCCAACTATTGCATCTCCTGCAGTGACTGGCT
TGCCTTCGCACAAAATGGCACCTGTTTCCTAATGGACCCCTTCTCCGAGATCACCTTGACGCTTCCTAACCTATCTTCTT
TCTGTCTTGTGGATGAGCCTGTTGCAATTATTAATGGTCG---TGATGTCCTGGATGAAGACATGTCTTGTCCTCTGCTA
CAGATGGATACTGCGATATTTCTGCGCAAGGTAATCAGGTGCTCGGAACTCCTTGTTGCTGCCATCGTTGAAATTGGGCC
TCTTTTCACTGTTGCGTACTGCCAACCGGGTTCAACCTCATGGTTGGTGAGTGAACTTGGCAGCATAGGGTCGGTCATAG
ACATGATGTTCTATGAAGGTATGTTGTATGTCATTGATGAGTTCAACGACCTTTTGGCAATCAATGTCAGAGAGGACAAT
GATAATGGCAAGTTAAGGGTATCTCGGATCGAGCGTCTACTTGATGGTGCCCCCTGTGTCTTAAAGTTGATCCAAGGTGG
CATCTCTTACTTCGAGTCGTATCTAGTTGAATCTCATGGTGCACTACTGCTGGTACAGAGAACAATATTTGGTGAATGTG
ATAATGACACGATTGGTGGTATCAAGCC---AGTAGGGATTGAATTTGAGGTGTGTCAGTCAGACTTCCAGTCTCGAAGT
TGGGAGAAGGTGAGCAGTGTTGGGGGTGACCAGACATTGTTCGTCAGCCAAAGTTCATCCCAATCTGTTGACGTGTCTCA
GTACAAGCTGAAGGGGGATTGCATCTACTTCCTGGATGATGGCAGCTGTGACTGGTTCTGGAAGGATGCGCCAAGTTCTT
GTGCCGTATATGACATGCGAGATGGAAACTGTTTCTTCATACCACTGCCGACAGTAGCATGCAAGGACGTCAAAATGCTA
GCGGCGTGGCTTTTCCCTCAGAACTGAGATAGATATTTTCCTCCAT------GAGTGATGCTTTGGCGGATCATTGAGCT
GTGGACGTGAGC-ATTGTTAACTGG--------------------GTGTTTGTTCTCCATCTGATCTCCGCAATT-TCAT
TTGGATGTAGCATGTGTTTGTTTTGTGTCAGCTTTTGCATGTTGCAACTGGAAGGG---------------------TGT
TCTAATCCTACTTGGAAGTTGATGCTTGTGCTCTGCAATTAAGCTATCTAGAAGAATTTCAATTTATTTCTATCTAAACT
GAAT-----TTCACATGTTCTTTGCAGTGCTCACCATGTTAAATTTTTCTCTGTTCTTGTTAGTGGAGTTGTTTTCTTGG
TACGGGTCTGTAGG--ACCATCATATTTACAGTACCTTCTTGCTCAGCTATTGGATTTCATTTCTTGGGCTTCCAAACTG
GATTCCTTTTTTCTTTCCAGAATTGCATTGCATGTATATAAACAATGCATGTCTTGGTTTTCAGGTTTATGGAATAATGA
CATG--------------TTGTAAGTTGGCACAAGTCAAGTTTAAATCATGTGAGTTGCACGCCTGTGCATAGTATGTCT
TTGGTGCTCAAATTCTCACTAGATCCTTTTCTTTTTCTTTA--CAATCTGGCACCAAGGCAATGGTTTCCATTTTTTCAA
GTCAATCACCTTGTAACATTACTTTGTGTAGGCACCGTCTTTGAAAATGCCCCCATTCTATAATTCAGGATCTACATTGA
TAAGTATTGCCTCTGTCCGGAAATACTTGTCGGAGAAATGGATAAAAATAGATGTATCCAAAACTAAAATACATCTAGAT
ACATCCATTTCTTTGACAAGTATTTTCAGACGGAGGGAGTACTCACAAGTCAGGACATGACTCGCCTGCCTATGTAAATT
CCTGAAAAGGTTTTATGGCACTATGTAAATTCTCACCTGCCTCAACTATGAGT---------GTTGTACAAACCATGCGA
AATCTGAATTCATTTATATGGGATGCTGCTCAACTGTTAATGTCTCCCAACAGGAAAAAGTAAAGCCA
>chr5A_163
CTAACTACTACTCGTGTATAGACGCAACCTAATCAGCTAGCTAAACTAGCATGGACTCCTATACCATCAGCTCGTACTTG
ACTCAACTAGGAAACTATCCTATCCTACACGTGCCAGGACTTAACCAGACCTAATAATCAAGATTATTTCTAATAATCTT
TCTTTAATCTTGACTTGTCATCTCCTCGTGCTCACTCTGTCTTGATCTTCACTCGCTGGAGATCCATGACTTGACGATCC
AAACTCCGATGTACGATCCGGACTACCAGTCCACACGGTCGCATCTACGCGTACAACGTGCAAGACTAAACACATCATCA
GTCTTCACATCGTACAACTTAACTGGTCACTGTCCCACTACATGTCGAACTTGATCTTCAACTATCATATCCATACATTA
AGTATGACCCGCCTGGAAACATGCAGTGCCTCCTTGCTCTGGCATGTTGTGCCACCTTCATTGATTGGCCGCTGCCTTGC
ACTCGGTCCGCACCATACTCCTTGTACTTGCTCGCAATAGATCCGCTCTCCACTGCTCGCACACCTCCTCGCTTTACGAT
GGTTTCACCTACCACCGTCCGCCTACGGCATCACACCGAACCCACGCTGGCCGCAATCAGGACGCTCGAGGACATGGACA
TGATTCACGGAACACCATGCACACCGCTTCCACTTCAACAAATCATCACCAAGACGAGCACTTGGACACGACGACGACTC
ACAGACTCAACGACGACTGACCGTGCAAACTCGCACGACACCTTGACTCATCCGACTCTCCCGGACAATGATCTTGATGA
GCTCCAGCACCGCACCTCGGCACCACCTCTCCCATCAATGATCTTCTTCCACAGCCTTGCCGACGACAACCTACCGTCTC
CCTCCTTGTCGCTCCGACGAACGACGATCGCTTGTTCCTCCTCTTCACCGCATCATCCAGCGACTTCATGGCCCGCCCCG
AGGCGCTAGTAGATGGGGCAAGCGTTCGAACCTGAACCTTGCTCTAGATACCAATTGTTGGACTTCAGCCTTCAGGATCG
ATCACATAAAAATAGACGAACACGCACGCTCAAAAACTTTTGCCAAAGGCACGTGTCGTACCTTTCTTTTTCCTTTTTTT
TTATTTTCTTCTTTTCTCACGATGTTACATCAAAACTACAGCCATGGTCACGTATATATATACATGCCCTGGCGTCTAAA
CTAGCTAACCTAGTCGGACACAAAGCTAACTCCTAATACTACTCAAATCGGAACACCTAGCCGACCCTAACTACTACTCG
TGTATAGACGCAACCTAATCAGCTAGCTAAACTAGCATGGACTCCTATACCACCAGCTCGTACTTGACTCAACTAGGAAA
CTATCCTATCCTACACGTGCCAGGACTTAACCAGACCTAATAATCAAGATTATTTCTAACA-------------------
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>chr1D_318
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------------------------------------------------------------AGCTCATAGCTTAATTCAGA
AGAGGGTATCATTCTTTTTT--C--------AGAACAGAGTATTTCTTCTACTCATAGTACAAACTCAACCGTTTCTACA
-----TTTTTTTT-TC-ACG-GTGGAAACACGCAATGCAATGTGATTACCTGTTTTGGAATTCCTACTAATGTGGAAAAG
ATGTGACTTTCTGTGGACGGATCAGGCAAGAAACTTGAAATGAACAAGGAGAATACTGTTGATGATTGCCTC--------
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-------------TTAAACTTTGAAATTGTAAAAGCAAGTTA---ATTA--CATTAGATTTGTGGTCTGGACATAATTAT
GTACCCTCTCTGCCTG----------------------------ATTTCGTTTGTGGTAATCTTGTTATACAAAGCCTGA
CAAGTATTCTTTTCTTCTATGAAGCAGATGTCGTTTGCCAAGAAGCTGCAGACACACCGTCCACAATCATGGTCAGCCCT
GCCATCAGATCTTGCTGGTCTGGTCCTTCGTCGCCTCCCTTCCCATGCCGACCATGTGCGCTTCGCTGATGTATGTCACC
ATTGGCGCTTCTCCAGACAAGAGCATTGCCTGCCCCCACCTTTACCATGGCTTGCATTCCCTGATGGAACCTTCTTCGGC
CTTCCCTGTCGAGAAGGGGCAAAAGAGTCCTTCAAGCTCCACAGCAGTGCCAACTATTGCATCTCCTGCGGTGACTGGCT
TGCCTTCGCACAAAATGGCACCTGTTTCCTAATGGACCCCTTCTCCGAGATCACCTTGACGCTTCCTAACCTATCTTCTT
TCTGTCTTGTGGATGAGCCTGTTGGAATTATTAATGGTCG---TGATGTCCTGGATGAAGACATGTCTGGTTCTCTGCTA
CAGATGGATACTGCGATATCTCTGCGCAAGGTAATCAGGTGCTCGGAACTCGTTGTTGCTGCCATCGTTGAAATTGGGCC
TCTTCGCACTGTTGCGTACTGCCAACCGGGTTCAACCTCATGGTTGGTGAGTGAACTTGGCAGCATAGGGTCGGTCATAG
ATATGATGTTTTATGAAGGTATGTTGTATGTCATTGACGAGTTCAACGACCTTTTGGCAATCAATGTCAGAGAGGACAAT
GATAATGGCAAGTTAAGGGTATCTTGGATCGAGCGTCTACTTGATGGTGCCCCCTGTGTCTTAAAGTTGATCCAAGGTGG
CATCTCTTACTTCGAGTCGTATCTAGTTGAATCTCATGGTGCACTACTGCTGGTACAGAGAACAATATTTGGTGAATGTG
ATAATAACACGATTGGTGGTATCAAGCC---AGTAGGGATTGAATTTGAGGTGTGTCAGCCAGACTTCCAGTCTCGAAGT
TGGGTGAAGGTGAGCAGTGTTGGG--------------------------------------------------------
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>chr1A_318
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------------------------------------------------------------AGCTCATAGCTTAATTCAGA
AGAGGGTATCTTTTTTTTT----CAGAACAGAG-------TATTTCTTCTACTCATAGTACAAACTCAACCGTTTCTACA
TTTAATTTTTTTT-TC-ATG-GTGGAAACACGCAATGCAATGTGATTAGCTGTTTTGGAATTCCTACTAATGTGGAAAAG
ATGTGACTTTCTGTGGACGGATCAGGCAAGAAACTTGAAATGAACAAGGAGAATACTATTGATGATTGCCTC--------
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-------------TTAAACTCTGAAATTGTAAAAGCAAGTTA---ATTA--CATTAGATTTGTGGTGTGGACATA-TTAT
GTACCATCTCTGCCTG----------------------------ATCTCG-TTGTGGTAATCTTGTTATACAAAGCCTGA
CAAGTATTCTTTTCTTCTATGAAGCAAATGTCGTTTGTCAAGATGATGCAGACACACAGTCCACAATCATGGTCAGCCCT
GCCATCAGAGCTTGCTGGTATGGTCCTTTGTCGCCTCCCTTCCCACGTTGACCGTGTGCGCTTCGCTGCTGTATGTCACC
ATTGGCGCTTCTCCAGACAAGAGCATAGCCTGCCCCCACCTTTACCATGGCTTGCATTCCCTGATGGAACCTTCTTCGGC
CTTCCCCGTGGAGACGGGGCAAAAGAGTCCTTCAAGCTCCCAATCAGTGCCAACTATTGTATCACCTGCGGTGACTGGCT
TGTCTTCTCACAGAACGACACATGTTTCCTAATGAACCCCTTCTCCAAGATCACCTTGACGCTTCCTAACCTATCTTCTT
TCTGTCTTGTGGATGAGCCTGTTGGAATTATTAATGGTCG---TGATGTCCTGGATGAAGACATGTCTAGTCCTCTGCTA
CAGATGGATACTGCGATATCTCTGCGCAAGGTAATCAGGTGCTCGGAACTCCTTGTTGCTGCCATCGTTGAAATTGGGCC
TCTTTGCACTGTTGCGTACTGCCAACCGGGTTCAACCTCATGGTTGGTGAGTGAACTTGGCATCATAGGGTCGGTCATAG
ACATGATGTTCTATGAAGGTATGCTGTATGTCATTGATGAGTTCAACGACCTTTTGGCAATCAATGTCAGAGAGGACAAT
GATAATGGCAAGTTAAGGGTACCTCGGATCGAGCGTCTACTTGATGGTGCCCCCTGTGTCTTAAAGTTGATCCAAGGTGG
CATCTCTTATTTCGAGTCGTATCTAGTTGAATCTCATGGTGCACTACTGCTGGTACAGAGAACAATATTTGGTGAATGTG
ATAATGATACGATTGGTGGTATCAAGCC---AGTAGGGATTGAATTTGAGGTGTGTCAGTCAGACTTCCAGTCTCAAAGT
TGGGTGAAGGTGAGCAGTGTTGGGGATGACCAGACATTGTTCGTCAGCCAAAGTTCATCCCAATCTGTTGACGTGTCTCA
GTACAAGCTGAAGGGGGATTGCATCTACTTCCTGGACGATGGCAGCTGTGACTGGTTCTGGAAGGATGCGCCAAGTTCTT
GTGCTGTATATGACATGCGAGATGGAAATTGTTTCTTCATACCACTGCCGACAGTAGCATGCAAGGACGTCAAAATGCTA
GCGGCGTGGCTTTTCCCTCAGAACTGAGATAGATATTTTCCTCCAT----ATGAGTGATGCTTTGGCGGATCGTTGAGCT
GTGGACGTGAGC-ATTGTTAACTGG--------------------GTGTTTGTTCTCCATCTGATCTCTGCAATT-TCAT
TTGGATGTAGCAAGTGTTTGTTTTGTGTCAGCTTTTGCATGTTGCAACTGGAAGGG---------------------TAT
TGTAATCCTACTTGGAAGTTGATGCTTGTGCTCTGCAATTAAGCTATCTAGAAGAATTTCAATTTATTTCTATCTAAACT
GAAT-----TTCACATGTTCTTTGCAGTGCTCACCATGTTAAAGTTTTCTCTGTTCTTGTTAGTGGAGTTGTTTTCTTGG
TACGGGTCTGTAGGGCGCCATCATATTTACAGTACCTTCTTGCTCAGCTATTGGATTTCATTTCTTGGGCTTCCAAACTG
GATTCCTTTTTTCTTTCCAGAATTGCACTGCCTATATATAAACAATGCATGTCTTGGTTTCCAGGTTTATGGAATAATGA
CATG--------------TTGTAAGTTGGTACAAGTCAAGTTTAAATCATGTGAGTTGCACACCTGTGCATAGTATGTCT
TTGGTGCTCAAATTTTCAGTAGATCCTTTTCTTTTTCTTTATATAATCTGCCACCAAGGCAATGGTTTCCCTTTTTTCAA
GTCA-TCACCTTGTAACATTACTTTGTGTAGGCACCGTCTTTGAATATGCCCCCGTTCTATAATTCAGGATCTACATTGA
TAAGTACTGCCTCCGTCCAGAAATACTTGTCCGAGATATGGATAAAAATGGATGTATCCAAAACTAAAATACATCTAGAT
ACGTCCATTTCTTCGACAAGTATTTTCGGAGGGAGGGAGTATTCACAAGTCAGGACATGACTCGCCTACCTATGTAAATT
CCTGAAAAGGTTTTATGGCACTATGTAAATTCTCACCTGCCTCAACTATGAAT---------TTTGTACAAACCATGCGA
AATCTGAATTCATTTATATGGGATGCCGCGCAACTGTTAATGTCTCCCAGCGGGAAAAAGTAAAGCCA
>chr1B_318
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------------------------------------------------------------AGCTCATAGCTTAATTCAGA
AGAGGGTATCTTTTGTTTTTTTCCAGAACAGAG-------TATTTCTTCTACTCACAGTACAAACTCAACCGTTTCTACA
TTTATTTATTTTT-TCCACG-GTGGAAACACGCAATGCAATGTGATTAGCTGTTTTGGAATTCCTACTTATGTGGAAAAG
ATGTGATTTTCTGTGGACGGATCCGGCAAGAAACTTGAAATGAACAAGGAGAATACTATTGATGATTGCCTC--------
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-------------TTAAACTTTGAAA-------------------------CATTAGATTTGTGGTCTGGACATA-TTAT
GTACCCTCTCTGCCTG----------------------------ATCTCG-TTGTGCTAATCTTGTTATACAAAGCCTGA
CAAGTATTCTTTTCTTCTATGAAGCAAATGTCGTTTGCCAAGATGATGCAGACACGCAGTCCACAATCATGGTCAGCCCT
GCCATCGGAGCTTGCTGGTATGGTCCTTTGTCGCCTCCCTTCCCACGCCGACCGTGTGCGCTTCGCTGCTGTATGTCACC
ATTGGCGCTTCTCCAGACAAGAGCATAGCCTGCCCCCACCTTTACCATGGCTTGCATTTCCTGATGGAACCTTC------
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>chr1A_319
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-------------------------------------------------------------GCCCGTAGGTTAATTCAGA
AGAGGCTATCTTTTGTTTTT--CCAGAACGGAG-------GGTTACTTCCACTTACAGTACAAACTGAAACATTTCTAGA
TTTGATTTTC-TA-TTCATGAGTGGAAACACGTTATGCACTGTGATTAGCTGTTATGAAATTCCTAATTGTGTGAAAAAG
ATTTGACTTTCGGAGGACGCATCAGGCAAGAAACTTGAGATGAACAAAGAGAATCCTATTGTTGATTTCCTC--------
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-------------TTAAACTGTGAAATTGTAGAAGCA---TATGGATCA--CATCAGATTTGTGGTATTGACATA-TTGC
GTACCATCTCAGCCTCTGATCTTTTCAAAAAATCTCTGCCTCTCATCTCG-TTGTGGTAATCTTGTGATAC-AAGCCTGA
CAAGTGATCTTTTCTTCTGTGAAGCAGATGTCGTTTGCCAAGAAGCTGCAGACAGACCATCCACAATCATGGTCCGCGCT
GCCATCTGAGCTTGCTGGTCAGGTCCTTCGTCGCCTCCCTTCCCACGCCGACCGTGTGCGCTTCGCTGCTGTATGTCACC
ATTGGCGTTTCTCCAGACAAGAGCATTGCCTGACCCCACCTTTACCATGGCTTGCATTTCCTGATGGTACCTTCTTCGTT
TTTCCCCATGGAAAAGGGGCAAAAGAATCCTTCAAGCTCCCCAGCAGTGCCAACTAATGCATCTCCTATGGTGACTGGCT
TGCCTTCGCACACAATGGCACCTGTTTCCTAATGGACCCCTTCTCCGAGATCACCTTAACGCTTCCTAACCTATCTTCTT
TCTGTCTTGTGGATGAGCCTGTTGGAATTATTAATGGTGG---CAATGTCCTGGATGAAGATATGGCTGGTCCTCTACTA
CAGATGGATACTGTGATATCTCTGCGCAAGGTAATCAGGTGCTCGGAACTCCTTATTGCTGCCATCATTGACATTGGGCC
TCTTTGCACTGTTGCGTACTGCCAACCGGGTTCAACCACATGGCTGGTGAGTGGACTTGGCAGCAAAGGGTCGGTCATAG
ACATGATGTTCTATGAAGGTATGTTGTATGTCATTGACGAGTTCAACGACCTTTTGGCAATCAATGTCAGACAGGACAAT
GATAATGGCAAGTTAAGGGTTTCTCGGATCGAGCGTCTACTTGATGCTGCCCC-TATGTCTTTAAGTTGATCCAAGGTGG
CATCTCTTACTTTGAGTCGTATCTAGTTGAATCTCATGGTGCACTACTGCTGGTAAAGAGAACAATACTTGGTATATGTG
ATAATGACACGATTGGTGGTATCAAGCC---AGTAGGGATCGAATTTGATGTGTGTCAGTCAGACTTCGAGTCTCGAAGT
TGGGTGAAGGTGAGCAGTGTTGGGGATGACCAGGCATTGTTCCTCAGCCAAAGTTCATCCCAATCTGTTGACGTGTCTCA
GTACAAGCTGAAGGGGGATTGCATCTACTTCATGGATGATGGCAGCTGTGACTGGTTCTGGAAGGATGCGCCAAGTTCTT
GTGCGGTATATGACATGAGGGATGGGCAGTGTTTCTTCATACCACTTCCGACAGGATCATGCAAGGACCTCAAAACGCCT
GCAGCATGGCTTTTCCCTCAGAGCTGAGATAGATATTTTCCTCCAT----ATGATTCATGCTTTAGCTGATAGTTGAGCT
ATGGACCGCTGATATTGTCAACTGGATGCTCTCCATCCAATCTCCGTGA-------------------------T-TCGT
TTGGATGTAGCATGTGTTTGTTTTGT--CAGGTTTTGCATG---------------------------------------
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>chr1D_328
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----------------------------------------------------------------------TTAATTAAGA
AGAGGCTATGTTTTGTTTTT--C--------AG-------TGTTTCTTCCACTTACAGAACAAACTCAATCATTTCTAGA
TTTAATTATTTTTATTTATGAGTGGGAACACGTAATGCGATGTGATTGGCTGTTCCGGATTTCCTACTTGCGTGGAA-AG
ATTCAACTTTCGGAAAACTGATCAGGCAAGAAACTTGAAATGAACAAAAAGAACCATGTTGATGATT-------------
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--------TCCTCTTAAATATTGAAATTGTGGATGCA---TATGGATCACGCATTAGATTTGTGGTATGGACATG-TTAT
TTACTCTCTCTGCCTG----------------------------ATCTTG-TTTTGGTAATCTTGTGATAC-AAGCCTGA
CAAGTATTCTGTTCTTCTATGAAGCAAATGTCGTTGGGCAAGATGGTGCAGACACACAGTCCACAATCATGGTCAGCCCT
GCCTTCAGAGCTTGCTGGTCTGGTCCTTCGTCGCCTCCCTTCCCACGCCGATCGTGTGCGCTTCGCTGCTGTATGTCACC
ATTGGCGCTTCTCCAGAAAAGAGCATTGCCTGCCCCCACCTTTACCATGGCTTGCATT-CCTGATGGAACCTTCTTTGGC
CTT---CGTGGAGAAGGGGTGAAAGAGTTCTTCAAGCTCCCCATCAGTGCCAACTATTGCATGTCCTGCAGTGACTGGCT
TCTCTTCTCACACAATGGCACCTGTTTCCTGATGGATCCCTTCTCCAAGGTCACCTTGACGCTTCCTAACCTATCTTCCT
TCTGTCTTGTGGACGAGCCTGTTGGAATTATTAATGGCCG---TGATGTCCTGGATGAAGATATGGTTGGTCCTCTGCAA
CACATGGATACTGCGGTATCTCTGCACAAGGTGATCAGGTGCTCGGAACTCCTTGTTGCGGCCATCATTGACATTGGGCC
TCTTCGCACTGTTGCATACTGCCAACCGGGTTCAACCTCATGGCTGGTGAGTGGACTTGGCAGCAAAGTGTTTGTCATGG
ACATCACGTGCTATGAAGGTATGTTGTATATCATTGACTTTTTCAATAATC-TTTGGCAATCAATGTCGAAGAGGACAGT
AATAATGGAAAGTTAAGGGTTTCTCGGGTCGAGCGTGTACTTGAGGGTTCCCCCTCTGTCCTTAAATTGATCTCAGGTGG
CGGCACTTATGTTCATCCGTACCTAGTTGAATCTCATGGTGCACTACTGTGGGTAAGGAGATTAATATATGGTATATGGG
ATAATGACACGATTGGTGGTACCAAGCC---AGTAGGGATTGAACTCGAGGTGTTTCAGTCAGACTTCCAGTCTCGAAGT
TGGGTAAAGGTGAGCAGTATTGGGGATGATCAGGCGTTGTTCGTCAGCCAAAGTTTATCCCGATCTGTTGACGTGTCTCA
GTACAACCTGAAGGGGGATTCCATCTACTTCCTGGATGATGGCAGCTGTGACTGGTTCTGGAAGGATGCGCCAAGTTCTT
GTGCCGTATATGACATGCGAGATGGAAATTGTTTCTTCATATCACTGCCGACAGTAGCATGCAAGGACGTCAAAATGCT-
-------------------------GAGATAGATATTTTCCTCCAT----ATGAGTGACGCTTTGGCGGATCATTGAGCT
GTGGACGTGAGC-ATTGTTAACTGG--------------------GTGT-------------------------T-TCAT
TTGGATGTAGCATGTGTTTGTTTTGTGTCAGCTTTTGCATGTTGCAACTGGAAGGG---------------------TAT
TGTAATCCTACTTGGAAGTTGATGCTTGTGCTCTGCAATTAAGCTATCTAGAAGAATTTCAATTTATTTCTATCTAAACT
GAAT-----TTCACATGTTCTTTGCAGTGCTCACCATGTTAAATTTTTCTCTGTTCTTGTTAGTGGAGTTGTTTTCTTGG
TACGGGTCTGTAGG--GCCATCATATTTACAGTACCTTCTTGCTCAGCTATTGGATTTCATTTCTTGGGCTTCCAAACTG
GATTCCCTTTTTCTTTCCAGAATTGCATTGCCTATATATAAACAATGCATGTCTTTGTTTTCAGGTTTATGGAATAATGA
CATG--------------TTGTAAGTTGGCA-----CAAGTTTAAATCATGTGAGTTGCACGCCTGTGCATAGTATGTCT
TTGGTGCTCAAATTTTCACTAGATCCTTTTCTTTTTCTTTATATAATCTGGCACCAAGGCAATGGTTTCCCTTTTTTCAA
GTCA-TCACCTTGTAACATTACTTTGTGTAGGCACCGTCTTTGAATATGCCCCCATTCTATAATTCAGGATCTACATTGA
TAAGTACTGCCTCCGTCCGGAAATACTTGTCGGAGATATGGATAAAAATGGATGTATCCAGAACTAAAATACATTTAGAT
ACATCCATTTCTTCGACAAGTATTTTCGAAGGGAGGGAGTATTCACAAGTCAGGACATGACTCGCCTACCTATGTAAATT
CCTGAAAAGGTTTTATGGCACTATGTCAATTCTCACCTACCTCAACTATGAAT---------TTTGTACAAACCATGCGA
AATCTGAATTCATTTATATGGGATGCTGCGCAACTGTTAATGTCTCCCAACGGGAAAAAGTAAAGCCA
>chr1D_555
TTAAGGATCTACATTAATAAGTACTGCCTTAGTCTAGAAATACTTGTCGGAGAAATGGATAAAAATGGATGTATCCAAAA
CTAAAATACATCTAGATACATCCATTTCTTTGACAAGTATTTTCAGACGAAGGGAGTACTCACAAGTCAGGACATGACTC
GCCTGCCTATGTAAATTCCTGAAAAGGTTTTATGGCACTATGTAAATTCTCACCTGCCTCAACTATGAATTTTGTACAAA
CCATGCGAAATCTGAATTCATTTATATGGGATGCTGCTCAACTGTTAATGTCTCCCAACGGGAAAAAGTAAAGCCACTCT
TGCAGACTTCACACATATTTTCTGTTATTTTGTATCCAAAAGAATCTTGCGCTCCCTATAATTTTTAAGGAAAATAGTCC
ATCGTGAGTTATTGCGCGCGGTGTTGTGCTAGAGTAACTGTTCTATTTCATTCGTACAGGAAAACTTAAAAAAAACTATG
AATTCAAGATTTGCTGATTTACATTTTGCAACACCAGGGGAAAACAAATATTCTAATATCCTGCTTCATATGTGATATTC
CTAGAAAGGAAAAAAAATATTGTTTGCTGCAGCCAATACAACCTTGGTGCCGAGCCCCGACTGAGCACGTTGATGCGGTC
TCCTGTTGTGACGATGACGATCTGACAACCAAAGAGAGGAGGCATTAGGAGGGATCAGGGATCACTCGCTGCGCAACCAT
GCGACGGGCACCTGCAAATGCTGTTGCATACTAGCTGTGTCAGGTGAGAAAAACTGATGACAAGATTCGGACTGAATTCC
TTTGTGGCAGACAACGTTCAAGACAAAAACCAGATTAAACTTCCAAATAAGAAACAGAAGCAAGAAACAGATGGTGACAC
CTTGGAGGAAATGACCGCAATCACCGCAAAACCAGACCTTCTCACTACTGATGCAAAGAAGAGGGAGAGTGAAACGCTGG
GTCTTCTTGGCATGCTTGTCAACCTTTGCACCAGAACCTCTGAATAGTGTGAAGAACCATTCGGCGCAAACTATCGATTT
TATTGCACGGAAGGAATTCATGTACAGTACTTGATTTGGTCCTGAATTTAAACTTGAGTCTACATCGAAGGGTGTCAAAT
GGGTAGCCGCATCCTACGGCAGAAAATTCCCTACAAAGCAAACAACAAAAGGAAAAAGTGTGTCAAATTATAGCAGAGTC
TCATCTCTGATATTTCTGGATGTGCTTCCCCCGCCAGAGATAATAAATGAAGAAGTGCAGTGCAACCCTATCACAGAGAG
GCAAAACATATCTTTGATCAATGACATGTTGCAAGTATGGCCGAGGGCGGGGCATACTAGCGTAGGACACCCAAATAATG
ATGTGTTGATCCTCATGGTTGTGTGGTAGCCAATGCCTGGATCTAAAACTATGCTTCCACCCGAAGTACACAACTGCCCA
AATAATTTTGGGCCGCTTATATCTTCCTCCCGAAAGGAACAGGGATGATTCAAATTCTTGACTTCGAATATCTCCCTCTG
GCCATGTTACCAGCACGGGTATGCTCGTGAGGTGACTTAGAGTATGTCCCATGTCACCTAAGCTAATACCCCAAGTTGAG
TTTAGTGAAATAAGACAAGGTTGAAAGCTACATAACTAATCGAATTCTTTTCTAAACAACTGTATCATCATTTTCATGTA
CTGACACGATGCTTGTCTGTGAGTAATGGTATATTAGCGGATGGGTCTACCCCATGAGAATAGATATATATCAAGTATTC
CCACTGTCCCACAATAGTATATCAGAGAGTGTCTCGGGAATCAGCCACCTCTGTATAGACGATTGTCATGGTGATCTACC
CAGAATACATGGCCTTCTACTTCGTCATTGTCATGGTGATCTACCCAGATCCGCCATGTTTTGGAGCGCAAGCACTTAAC
TCCGTCTCCTTGCAGTTGAATTTTTTAAAAATTAATTAACATTTTTAAAAATCATGAACACTTTCTAAAATCACGTGTGC
TTTTAAATTTCATAAACATTAAAAAAATATGAGCATTTTTTGAACCAAAAAAATTCCCAACATTTTATGATTCATGAATG
TTTTAAAAATTCATGAGCTGTTTTAAATTTATGATTTTCTAAATCCATGATTTTTTAAAAATCAATAGTATTGTTTTATT
CATGAATACCAAAAGAATGGAAGAAACTGTAAACACCTTGTGTAAAAAACAGACACAACTGGGCCGGCCCATAGACCAGT
GCCTTCCACAGTTCCCCGACTCCACTCGATCTTACCCTAAAAAAAAAGACTCCACTCGATCCCATTCCGACTCCGCGCGA
TGGGCACCGGAGACGCCGGCGGCGACGGCGCGGGCCCAGGCCAGGCCGCCTTCGAGGAGCCGACTCAAACTCTGGTAAAA
CTCGAGAATCCTATTAGGTAATTAATTTGGTGGAGCTAGGAGCCCGTGCTCTGTCCCGATTCCACGCTTTGATGTTTGGG
TTCAGTTAGGGTTTCGGTCGCCGCGTTCGCCCATGCGGCCATGCTTCAGGAGTGTTCTGACGAGATGTCGTTAGGGTTTC
CGATTCACCTCCGACCTGCCGGCGTGCTTCGTCCGTACGAGGTGCCATGGTGTCCTTGTGATGATAAATCAGTGGTGCAT
TCCTGATCTGGAACTGCGCCGCATGTCTGCTCGATTTTCACTGAAGAATTAGTGACGCCCCTAGCTCAATTCAGAAGAAG
GTGTGTTTTGTTTTTCAGAACAGAGGAGTTCTTCCACTTATATTACAGAGGTGTCTTCTGTTATTTAAGAACATAGGGGT
TCTTCAACAGTCCCACTTTATAGTACAAACTCAGCCATGTTAAGATTTGATTTTTAGACCAATGATTGGAAATACGTAAC
CTAATGTGGTTACCTGTTCTTGAAATCTCACTTGTGGGGAAAAGATTTAACATTCTCGCTACGGATAACTTGAAACGAAC
AAAGACAATCCTCTTAAACTGTGAAATTGTAGAAGCA---TATGGATGA--CATTAGATTTGTGGTATGGGCATA-TTGC
GTACCCTTTCCGACTGT-------------------------------------------TCTTGTTGTAC-AAGCCTGA
CAAGTATTATTTTCTTCTGTGAAGCAGATGCCGTTTGCCAAGAAGCTGCAGACACACCGTCCACAATCATGGTCAGCCCT
GCCATCAGATCTTGCTGGTCTGGTCCTTCGTCGCCTCCCTTCCCATGCCGACCGTGTGCGCTTCGCTGCTGTATGTCACC
ATTGGTGCTTCTCCAGACAAGAGCATTGCCTGCCCCCACCTTTACCATGGCTTGCATTCCCTGATGGAACCTTGTTCGGC
CTTCCCCATGGAGAAGGGGCAAAAGAATCCTTCAAGCTCCCCAGCAGTGCCAACTACTGCATGTCCGGCGGTGACTGGCT
TGTCTTCTCACACAATGGCACCTGTTTCCTAATGGACCCCTTCTCCGAGGTCACCTTGACGCTTCCTAACATATCTTCTT
TCTGTCGTGTGGATGAGCCTGCTGGAATTATTAATGATCG---CCATGTCATGGATGAATATATGGTTGGTCTTGTGCTA
CACAGGGATACTGCGATATTTCTGCGCAAGGTAATAAGATGCTCGGAATTCCTTGTTTCTGCCATCGTTGACATTCCGCC
TCTTCGCACTGTTGCATACTGCCAACCGGGTTCAACCTCATGGCTGGTCAGTGGACTTGGCAGCATAGCGTCGTTCATAG
ACATGATGTTCTATGAAGGTATGTTGTATATCATTGACAGGTCCAACAACCTTTTGGGAATCAACGTCGGAGAGGACAAT
GATAACGGAAAGTTAAGGGTATCTCGGATCGAGCGTCTACTCGATGGTGCCCCCTGCGGCTTTAAGTATTTCCGAGGTTG
CCTCTCTTACTTCGATTCGTATCTAGTTGAATCTCATGGTGCACTACTGCTAGTACGGAGAGAAATATTTTATATACGTG
ATAATGACATGATTGGTGCTACCAAGCCTGCAGTAGGGATTGAATTCGAGGTGTCTCAGTCAGACTTCCAGTCCCGAAGT
TGGGTGAAGGTGAGCAGTGTTGGGGATGACCAGGCATTGTTCATCAGCAAGGGTTCCTCCAGATTTGTTGACGTGTCTCG
GTACAAGCTGAATGGGAATTGCATATACTTCCTGGACGATGGCAGCTGTGACTGGTTCTGGAAGGATGCGCCAAGTTCAT
GTGCAGTATATGACATGCGGGATGGAAATTGTTTCTTCATACCACTGCCGACAGTACGATCCAAGGACGTCAAAATGCTA
GCGGCATGGCTTTTCCCTCAGAGCTGACATAGATATTTTCCTCCATGCATATGAGTGATGCTTTAGCGGATCATTGAGCA
ACGTAAGCGAAC-ATTGTCAACTGG--------------------GTGTTTGTTCTCCATCCGGTCTCCAGGACT-TCAT
TCGGATGTAGCATGTGTTTGTTCTGCGTCAGGTTTTGCATGTTGCAACTGGAAGGCCTTTTTTCCTGAGCTGTAGGATAC
TGTAGTCCTACTGGAAAGCTGATGCTTGTGTTCCTC----AAGCTATCTGGAAGACTTTGCCTTTACTTCTATCTAGATT
GAAAATGACTTAACATGTTCTTTGAAGTGCTCATCATGTTAAAACTTGCTCTATTCTGGTTAGTGAGTTGTTTTTCTTCA
TACGGGTTTGTAGGGCTATCGTA-ATTCATAGTTCCTTCTTGCTCAGCTATTAGATTTCATATGTTGGTCTTCCAAACTG
CATTC-TTTGTTCTTTCAAGATTTGCATTGCCTGG-----------------CTTGTTTTTCAGGTTTGCAAGCTATTGA
TGCTGAGAAAACTTACTTTTGTCAGTTGGTACAAGTCAAGTTTAAATCATGCGAGTTGCACACCTGTGCATAGTATGTCT
TTGGTGCTCAATTTTTCACTTGACCCTTCTCTTTTTCTTTT--TAATCTGGCACCAAGGCACTTTGCATAGGCGGTTG--
---------------------------------------------TATGCCCCCATTCAGTAATTCAGGATATACAATGA
TCAGTA--------------------------------------------------------------------------
-----------------------------------------CTCACAAGTCAGAACATGACTGACCTGCCTATGTAAATT
CCTAAAGAGC-TTTATGGCACTATGTAAATTCTCACCTGCCTCACTGTACAGTAGACACATATTTGAACAAACCATGTGA
AATATGAATTCATTTATCTTTGATGCTGCACAACTGTTAATGTCTCCCAAAGGAAA------------
>chr1B_880
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----------------------------------------------------------------------CTTCTTCGGC
CTTCCCCGTGGAGACGGGGCAAAAGAGTCCTTCAAGCTCCCAATCAGTGCCAACTATTGTATCACCTACGGTGACTGGCT
TGTCTTCTCACAGAACGACACATGTTTCCTAATGGACCCCTTCTCTGAGATCACCTTGATGCTTCCTAACCTATCTTCTT
TCTGTCTTGTGGATGAGCCTGATGGAATTATTAATGCCCGTGATGATGTCCTGGATGAAGATATGGCTGGTCCTCTGCTA
CAGATAGATACTACGATATCTCTGCGCAAGGTAATCAGGTGCTCGGAACTACTTGTTGTTGCCATCGTTGAAATTGGGCC
TCTTCGCACTGTTGCGTACTGCCAACCGGGTTCAACCTCATGGTTGGTGAGTGAACTTGGCAGCAAAGGGTCGGTCATAG
ACATGATGTTCTATGAAGGTATGTTGTATGTCATTGACGAGTTCAACGACCTTTTGGCAATCAATGTCAGAGAGGACAAT
GATAATGGCAAGTTAAGGGTATCTCGGATCGAGCGTATACTTGATGGTGCCCCCTGTGTCTTAAAGTTGATCCAAGGTGG
CATCTCTTACTTCGAGTCATATCTAGTTGAATCTCATGGTGCACTACTACTGGTACAGAGAACAATATTTGGTGAATGTG
ATAATGACACGATTGGTGGTATCAAGCC---AGTAGGGATTAAATTTGAGGTGTGTCAGTCAGACTTCCAGTCTCGAAGT
TGAGTGAAGGTGAGCAGTTTTGGGGATGACCAGGCATTGTTCGTCAGCCCAAGTTCATCCCAATCTGTTGACGTGTCTCA
GTACAAGCTGAAGGGGGATTTCATCTACTTCATGGATGATGGCAGCTGTGACTAGTTCTGGAAAGATGGGCCAAGTTCTT
GTGCGGTATATGACATGAGGGATGGGGAGTGTTCCTTCATACCACTGCCGACAGGATCATGCAAGGACTTCAAAATGCAA
ACGGCATGGTTTTTCCCTCAAAGCTGAGATAGATATTTTCCTCCAT----ATGTGTGATGCTTTGGAGGATCGGCGAGCT
ATGGATGCGAGC-GTTGTTAATGGG--------------------GTGTTTGTTCTCCATCTAATCTCCATGGTACTCAT
TTAGATATAGCATGTGTTTGTTTTGTGTCAGGTTTTGCATGTTGCAACTG------------------------------
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--------------------------------------------------------------------
>SNPs
SS----S----SSSSSS-SSSSSS--SS-SS-SSSSS--S--SS--S-SSSSS---SS-SSSSS-S-SS-SSSSSS-S--
-SSS--SS-SSS-S-SS-S-S--S-S-S--SS-S--SSSSSSS-S--SS-SS--S-S-------SSS--SSSSS--S--S
-S--SS--------------------------------------------------------------------------
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S------------------------------------------------------------S------------------
---------------------------------S----------------------------------------------
--------------------------------------------------S---S-------------------------
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-----S--------S-----------------------------S-----------------------------------
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----------------------------S---------------------------------------SS--S-------
----------------------------------------------------------------S----S----------
------------S-----------------------------------S-----------S-------------------
--------------------------------------------------------------------------------
---------------S--------------------S-------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------S-----------
--------------------------------------------------------------------------------
-----S--------------------------------------------------------------------------
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----S--------------------S------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S---------------------------------------------------
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------------------------------------------------------------------------------S-
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------------------------------------------------
--------------S----------------------------S--------------------------S---------
----S----------------------------------------S----------------------------------
------S------S----------------------S------------S------------------------------
-------------S-------------S--S-------------------------------------------------
--------------------------------------------------------------S-----------------
-----------------------------S---------------------S----------------
>forward_22
--AAGTCTCACAGCCTCACGTG----------------------------------------------------------
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>reverse_4085
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----AGAAGGTGAGCAGTGTTGGG--------------------------------------------------------
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>forward_51
-------------------------------ACGCCTAACCAGGAGCAATC-----------------------------
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>reverse_4269
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----------------------------CTGTTTCTTCATACCACTGCCG------------------------------
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>forward_3296
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----------------------------------------------------------------------------CACC
ATTGGCGTTTCTCCAC----------------------------------------------------------------
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>reverse_5228
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---------------------------AGACGGAGGGAGTACTCACA---------------------------------
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--------------------------------------------------------------------
