>input_sequence_66659
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--------------------------------------------------ATGGCGTCGGCGTCGCGGATCCTGCTCGTG
GCCGCGCTGCTCCTGGCGGCGTCGGCAATGACGTCCGCGCAGAAGGCGAAGGCGCCCGCGAAGCCGGCCCCCGCGGCCGC
CGACGCGCCCGCCGCCGTCGAGGCGCCCGCGAAGCCCGCCCCGGCCGCAGCCGACGCGCCCGGCGCGGCTGCCGCCGACG
GGAAGCCGCCGACGGACGTGACGGCCATGCTGGAGAAGTCCGGCAAGTACTCCAAGTTCGTGCAGCTGCTCAAGGAGACC
CGCGTGGAGACGCAGATCAACGCGCAGCTGACGGACAGCTACAACGGGCTGACCATCTTCGCGCCCACCGACGCCGCCAT
CGACGGGCTCAAGGCCGGCACCCTCAACGGGCTCTCCTCCCAGGAGCAGATCCAGATGGTGCTCTACTGCGTGCTCCCCC
GCTTCTACTCGCTCTCCATGCTCGGCACCCTCAACGGCAAGGTCAGCACGCAGGCGTCCGGCCACTCCGGCCCCTACACC
TACAAGATCAAGCCCTCCGGCAACAACGTCAACGTCTCCACCGGCGTCAAGGGCAACAACATGCTCCTCGGCAGCGTCGT
CAGCAAGGACTTCCCGCTGGCCTGCTACTCCGTGGACAAGATGCCACTCCCCTACGAGCTGTTCGGCCCGCAGCCGCCCA
CCCCGGCGCCCGCCCCCGCCCCGGCCCCCACCAAGTCCAAGCCCAAGAAGAAGAAGAAGTCCGCCGGGATCGCCGAGGCG
CCCGAGGCCGACGACGCCACCGCCGACGACGACACCGAGAAGTCCGCCGCCGCGCCCCTCACCGGCGTCGCCAGGTGGGC
CGCCGTCCTCGGTGCCGCCGTCCTCGGCGCCATGTTCTGA----------------------------------------
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>chr1B_1_TraesCS1B01G425000
AGTACACATGAATACCCGGTTGCAAATTCCTGAAGCTGCCACTGTTGTTAGTGCAAAAACCGTCGAAAATTGTCGCCCAT
TGGATTTAGACCGTGTGCTTCTGGGGGCGTTTGCTGGGATCTCAACCCTAGCGAACCCTCGCCAGATAGCTTTACCAATT
GGGCGTGGCCAGAAATCAGTCAGCTGAAATTTTTGTTTCAGGTCAGTCGATTCTTGAATCGTTGGATGCGAAATCAATGG
CCCACGGTTTTTCTTCAACCTCTCGACGCATCTTCTTCTTGGAGCCGCCAGCCACCACCGGCCTAACCGCCCCGCCCTCT
CCGGAACCACTTCCCACCGCCGGTTCTCCACCACCCCGGCCATTTCTCTAGGCCCCCCACGCTGAGCTTTTTCTCCAACG
AATCCCTATACCACCACGCCCACACACCACTGTCCACAAACCACCCCCAACTTGAACCCTAAGATAGATACTGGGGTGAT
GACGGCGAGCCCCTTCCTTCTCTCCGGCGAGGCCCTCCCTTCTTCTTTCTTCATTCAAAAATCGACTGACGCGGAAATAA
AAAATCAGCTGGCGTATATGTACCTAAACTGTTACCGATTATATAATTAATAAACACAACCAACGCAGAGGGGCTGTACA
TTGAGAATGTAGTGAAAAATTACGTGGGTTGCTAAAAAAATGTCGAAACCTTGCCTGCGGTGCAGATTCACAATCGTTTC
GGGTTCAGGCTCTCAAGGTAGTTCGTGAATCACATCACCTACGGCCACGGAGCGTAAATACGAGAGAAAGTTGCTGTCAG
ATTAGCTAGCTCGCAAAGAATTTCCACCGCGCGCGCATCTTCTCAGCTCA-----CACTCTCACCAGTCCCG-----TCT
CGTCGCCACCCACCGCCACTATAAGTCTATTAAACACACACTGCGAGATCGCGCTCCCTCCAAGACCAGCTCCCTCTCGC
CAGCCCGCCCCACCCACCAACCCATTGCCCGCCGGGACACCACCACGGCAATGGCGTCGGCGTCGCGGATCCTGCTCGTG
GCCGCGCTGCTCCTGGCGGCGTCGGCAATGACGTCCGCGCAGAAGGCGAAGGCGCCCGCGAAGCCGGCCCCCGCGGCCGC
CGACGCGCCCGCCGCCGTCGAGGCGCCCGCGAAGCCCGCCCCGGCCGCAGCCGACGCGCCCGGCGCGGCTGCCGCCGACG
GGAAGCCGCCGACGGACGTGACGGCCATGCTGGAGAAGTCCGGCAAGTACTCCAAGTTCGTGCAGCTGCTCAAGGAGACC
CGCGTGGAGACGCAGATCAACGCGCAGCTGACGGACAGCTACAACGGGCTGACCATCTTCGCGCCCACCGACGCCGCCAT
CGACGGGCTCAAGGCCGGCACCCTCAACGGGCTCTCCTCCCAGGAGCAGATCCAGATGGTGCTCTACTGCGTGCTCCCCC
GCTTCTACTCGCTCTCCATGCTCGGCACCCTCAACGGCAAGGTCAGCACGCAGGCGTCCGGCCACTCCGGCCCCTACACC
TACAAGATCAAGCCCTCCGGCAACAACGTCAACGTCTCCACCGGCGTCAAGGGCAACAACATGCTCCTCGGCAGCGTCGT
CAGCAAGGACTTCCCGCTGGCCTGCTACTCCGTGGACAAGATGCCACTCCCCTACGAGCTGTTCGGCCCGCAGCCGCCCA
CCCCGGCGCCCGCCCCCGCCCCGGCCCCCACCAAGTCCAAGCCCAAGAAGAAGAAGAAGTCCGCCGGGATCGCCGAGGCG
CCCGAGGCCGACGACGCCACCGCCGACGACGACACCGAGAAGTCCGCCGCCGCGCCCCTCACCGGCGTCGCCAGGTGGGC
CGCCGTCCTCGGTGCCGCCGTCCTCGGCGCCATGTTCTGATC---------------CGAGAAT------ACAACACATG
GTGGTGTGGTGGTGCCATCTTTCTTGCTCCGTGCGTGATCGAGTTGCGTTGGCGGATGGATCGGACCATTGGTCGAT---
-CCCTGTACCGGTAGATACTGTGATC-------TCATGATGTGTGTGCTCATCGGCTTTATTCTTTCTC------TTTTT
CTTCCTTTCTTCTGATGAAAA------------------CTTCTTCTCTCAA-TTCTTGTTGATTTGTATGCTGTAATTT
ATGTGATATACTAGTGCTTCTCGAATTCATTCATCGGATCCCACAAACACATTTCTAAACACATTTCTAGTAGTACCAGT
ACCCGCGATGTTGATCTGTCTGCCTCGCCTTGTTCCGGCGGCGTTCAAGATCAGATCTGTTCTTGCGAAAGCAGGGGAGA
CCGTGCAATAATGTTGCCTCCCACATTCCGTGGTAGCATACGGAAAGCAGGGTGGCAGATCCAAAACATCACTGC----C
ACTACGGTGGAGTACTAGATCTTGGATGCCATTGCCAGCGATGCTTTGCTCTGC--------------GGCCGAAA-GGG
CACCGCCACCGGCCATTTCTATATCGTTCCTGCATGCATCTCGATGCAGTGTGCACTTCACTCCACT-----CCAAAAGC
GACGCTGTACGACGGCATCTCCAGACATGATCATAAACAAATCTGAGCAAATACAGTATACCGTTGCTGCTGGCTCGAGT
TTGTACAGCCA------------------------------------------------TCGGCGAGAGCAGAGCTTGAG
ATGCGACTCAAAGCAAGCCAAAGAATTGAGAAAAAGAAAGATTTTGGATGGATTGGAGCGGT------------------
---GCATTATTGTAGTGGCCGTAGGGTGCGCCGGACAGGGACCATTCGCGCTTAGAAAACTTGATCAAGGGTGGCGTTTG
GCGCGGGATCGCTCTGGCTCGACTCACATGGAATGGAACCGACCCACCTACCGACTCACTGACTGACGACCGCGCTGGAT
CTG---------------GCGTTGCTCGTGTGTTG-TTTTAGGCTGACATCCGTCGATGATGGGGTGCCTCCTCCGCCTT
GCATGT
>chr1A_706
ATTCGCAT------------------------------------------------------------------------
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-------------------------------------------------------------------------TCGTTTC
GGGTTCAGGCACTCAAGGTAGTTCGTGAATCACATCACCCACGGCCACGGAGCGTAAATACGAGAGAAAGTTGCTGTCAG
ATTAGCTAGCTCGCAAGGAATTTCCACCGCGCG--CATCTTCCCAGCCCACCTCGCACTCTCACCAGTCCCG-----TCT
CGTCGCCACCCACCGCCACTATAAGTCTATTAAACACGCACTGCGAGATCGCGCTCCCTCTCAGACCAGCCCCTCCTCA-
-------CCCCACCCACCAACCCATTGCCCGCCGGCACACCACCACGGCAATGGCGTCGGCGTCGCGGATCCTGCTCGTG
GCCGCGCTGCTCCTGGCGGCGTCGGCGATGACGTCGGCGCAGAAGGCGAAGGCGCCCGCGAAGCCGGCCCCCGCCGCCGC
CGACGCGCCCGCGGCCGTCGAGGCGCCCGCGAAGCCCGCCCCGGCCGCAGCCGACGCGCCCGGCGCGGCTGCCGCCGACG
GGAAGCCGCCGACGGACGTGACGGCCATGCTGGAGAAGTCCGGCAAGTACTCCAAGTTCGTGCAGCTGCTCAAGGAGACC
CGCGTGGAGACCCAGATCAACGCGCAGCTGACGGACAGCTACAACGGGCTGACCATCTTCGCGCCCACCGACGCCGCCAT
CGACGGGCTCAAGGCCGGCACCCTCAACGGGCTCTCGTCCCAGGAGCAGATCCAGATGGTGCTCTACTGCGTGCTGCCAC
GGTTCTACTCCCTCTCCATGCTCGGCACCCTCAACGGCAAGGTCAGCACGCAGGCGTCCGGCCACTCCGGCCCCTACACC
TACAAGATCAAGCCCTCCGGCAACAACGTCAACGTCTCCACCGGCGTCAAGGGCAACAACATGCTCCTCGGCAGCGTCGT
CAGCAAGGACTTCCCGCTGGCCTGCTACTCCGTGGACAAGATGCCGCTCCCCTACGAGCTGTTCGGCCCGCAGCCGCCCA
CCCCGGCGCCCGCCCCGGCCCCGGCCCCCACCAAGTCCAAGCCCAAGAAGAAGAAGAAGTCCGCCGGGATCGCCGAGGCG
CCCGAGGCCGACGACGCCACCGCCGACGACGACACCGAGAAGTCCGCCGCCGCGTCCCTCTCCGGCGTCGCCAGGTGGGC
CGCTGTACTCGGTGCCGCCGTCCTCGGCGCCATGTTCTGATCTGATCCGATCCGATCCGATCCGAGAGGAACGACACAAG
GTG--GTGGTGGTGCCATCTTTCTTGCACTGTGCGTGATCGAGTTGGTGCGGTGCGGTGCGCTCAGCACTCAGCACGCAT
CCCCTGTACCG----ATACTGTGATC-------TGATGATGTGTATGTCCATCGGCTTTATTCTTTCTTCTTCCTTTTTC
CTTGTTTTCTTCTTGATTGATGAACACTCAATTCTTCTTCTTCTTCTCTGGTTTTCTTGTTGGTCTGTATGCTGTAATTT
ATGTGATATACTAGTGCTTCTCGAATTCATTCATTGGATT---------CATTCCACAACACATTTCGAGTAGTAC--GT
AGCTGCGATGTGGATCTGCCTGCCTT----------------GTTGAAGATCTGATCTGTTCTTGCGAAAACAGGGGAGA
CAGAGCAATAATGTTGCCTCCCACATTCCGTGATAGAATACGGAAAGCAGGGTGGCAGATTCAAAACATCACTAC----C
ACTACGGTGGAGTACTAGGTCTTGGATGCCATTGCCAGCGGTGATTTGCTCTGTGCGTGTTGTCGCTGGGCCGAAA-GGA
CACCGCCACCCACCAATTCTATATTGTTCTTGCATGCATCTCGATGCAGTGTCCACTTCACTCCACTCCAAACCAAAAGC
GACGCTGTACGACGGCATCTCTAGACATGATCATAAACAAATCTACGCAGATACA--ATACCGTTGTTGCCGCCTCGAGT
TTGTACAGCCGAGCCATCGGCTGTGGAGTGTGGAGTGTGGAGTGTGGAGTGTGTTTAACTCGGCGAGAGCAGAGCTTGAA
ATGCGACTCAAAGCAAGGCGAAGGATTAAGAAAATGAAAGATTTTGGATCGATCGCAGCGGTGCAGCGCGATACGGCCCA
GACGCATTATTGTACTGGGCGTAGGGTGCGCCGGACAGGGACCATTCGCGCTTAGAAAACTTGATGAAGGGTGGCGTTTG
GCGCGGGATCGCTCTGGCTTGAGTCAC-----ATGGAACCAACCCACCTACTGACTCA----------------------
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>chr1D_714
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-------------------------------------------------------------------------TCGTTTC
GGGTTCAGGCTCTCAAGGTAGTTCGTGAATCACATCACCCACGGCCACGGAGCGTAAATACGAGAGAAAGTTGCTGTCAG
ATTAGCTAGCTCGCAAAGAATTTCCACCGCGCGCGCATCTTCTCAGCTCA-----CACTCTCACCAGTCCCGTCTCGTCT
CGTCGCCACCCACCGCCACTATAAGTCTATTAAACACGGACTGCGAGATCGCGCTCCCTCTCAGATCAGCTCCTCCTCCC
CAG-----CCCACCCACCAACCCATCGCCCGCCGGGACACCACCACGGCAATGGCGTCGGCGTCGCGGATCCTCCTGGTC
GCCGCGCTGCTCCTGGCGGCGTCGGCAATGACGTCGGCGCAGAAGGCGAAGGCGCCCGCGAAGCCGGCCCCCGCGGCCGC
CGACGCGCCCGCGGCCGTCGAGGCGCCCGCGAAGCCCGCCCCGGCCGCGGCCGACGCGCCCGGCGCGGCTGCCGCCGACG
GGAAGCCCCCCACGGACGTGACGGCCATGCTGGAGAAGTCCGGCAAGTACTCCAAGTTCGTGCAGCTGCTCAAGGAGACC
CGCGTGGAGACGCAGATCAACGCGCAGCTGACGGACAGCTACAACGGGCTGACCATCTTCGCGCCCACCGACGCCGCCAT
CGACGGGCTCAAGGCCGGCACCCTCAATGGGCTGTCGTCCCAGGAGCAGATCCAGATGGTGCTCTACTGCGTGCTGCCCC
GGTTCTACTCGCTCTCCATGCTCGGCACCCTCAACGGCAAGGTCAGCACGCAGGCGTCCGGCCACTCCGGCCCCTACACC
TACAAGATCAAGCCCTCCGGCAACAACGTCAACGTCTCCACCGGCGTCAAGGGCAACAACATGCTCCTCGGCAGCGTGGT
GAGCAAGGACTTCCCGCTGGCCGTCTACTCCGTGGACAAGATGCCGCTCCCCTACGAGCTGTTCGGGCCGCAGCCGCCCA
CCCCGGCGCCCGCCCCGGCCCCGGCCCCCACCAAGTCCAAGCCCAAGAAGAAGAAGAAGTCCGCCGGGATCGCCGAGGCG
CCCGAGGCCGACGACGCCACCGCCGACGACGACACCGAGAAGTCCGCCGCCGCGTCCCTCTCCGGCGTCGCCAGGTGGGC
CGCCGTCCTCGGTGCCGCCGTCGTCGGCGCCATGTTCTGATC---------------CGATCCGAGAGGAACAACACATG
GTGGTGTGGTGGTGCCATCTTTCTTGCTCCGTGCGTGATCGAGTTGCGTTGGCGGATGGATC----CATTGGTGGAT---
-CCCTGTACCG----ATAGATACTGTGATCTCATGATGATGTGTGTGCCCATCGGCTTTATTCTTTCTC------TTTTT
CTTCCTTTCTTCTGATGAAAA------------------CTTCTTCTCTCAA-TTCTTGTTGATTTGTACGCTGTAATTT
ATGTGATATACTAGTGCTTCTCGAATTCATTCATTGGATTCCACG-------------ACACATTTCG---------AGT
ACCCGCGATGTGGATCTGTCTGCCTT----------------GTTGAAGATCAGATCTGTTCTTGCGAAAACAGGGGAGA
CAGAGCAATAATGTTGCCTCCCACATTCCGTGATAGAATACGGAAAGCAGGGTGGCAGATCCAAAACATCACTACCACTC
ACTACGGTGGAGTACTAGATCTTGGATGCCATTGCCAGCGATGCTTTGCTCTGTGTGTGTTGTCGCTGGGCGGAAAGGGA
CACCGCCACCCACCAATTATATATTGTTCTTGCATGCATCTCGATGCAGTGTCCACTTCACTCCACT-----CCAAAAGC
GACGCTGTACGACGGCATCTCTAGACATGACCATAAACAAATCTACGCAGATACA--ATACCGTTGCTGCTGCCTCGAGT
TTGTACAGCCATCGGCTA--------------------------TGGAGTGTGTTTAACTCCGCGAGAGCAGAGCTTGAA
ATACGACTCAAAGCAAGGCGAAGGATTAAGAAAA-GAAAGATTTTGGATCGATTGGAGAGGTGCAGCGCGATACGGCCCA
GGCGCATTATTGTAGTGGCCGTAGGGTGCGCCGGACAGGGACCATTCGCGCTTAGAAAACTTGATGAAGGGTGGCGTTTG
GCGCCGGATCGCTCTGGCTCGACTCAC-----ATGGAACCAACCCACCTACCGACTCACTGACTGACGATCGCGCTGGAT
CTGGCGTGCCGTTGCGTTGCGTTGCTCGTGCGTTGTTTTTAGGCTGACATCCATCGATGA---GGTGGCTCCTCCGCCTT
GCATGT
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
---------------------------------------S----------------------------------------
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-------------------------------------S----------------------SS-----------SS---S-
---SSSS-------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
------------S-------------------------------------------------------------------
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------------------------------------S--------------------------------------S----
-S------------------------------------------------------------------------------
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---------------------------------------------S----------------------------------
----------------S---------------------------------------------------------------
------------------------------------------------------S-----S-------------------
------------------------------------------------------------SSSS----------------
--------------------------------------------------------------SS-S--------------
-----------SSSS-------------------S-------------S-------------------------------
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----------------------------------S----S----SSSSS----S-SS----------S--------S---
-----------S-------------SSSSSSSSSSSSSSSSS---S------------------------S---------
-S-S----------------------------S---S------------------------------------S------
-----------------------------------------------------S-------------------------S
----------SS---S--------S----S----------------------S---------------------------
---------------------S----------------------SS---S-----SS---------------S-------
-------------------------------------------------------------------------------S
-----------------S-S---S---S------S--------------S------------------------------
-----------------------------------------------------------------S--------------
---------------------------SSSSS--------S----------------------------S----------
------------------------------S---------------------S-------SSS----S------------
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>forward_134
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----------------------------------TGGGATCTCAACCCTAGCGA--------------------------
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>reverse_1397
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------------------------------------CTCCCAGGAGCAGATCCAGA------------------------
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>forward_243
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---------------------------------------------------------------GGATGCGAAATCAATGG
CCC-----------------------------------------------------------------------------
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>reverse_2278
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-------------------------------------GCGGCGTTCAAGATCAGATC-----------------------
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