>input_sequence_66651
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------GGTACAATCGGTGAAGGGGAAGATGGAGCCGAAGCCCAAGAGGAAGAAGTCCTGGGCGGCGGCTCCAGCGGAGG
TGGAGGACTTCACAGCGCTTGAGCTGGAAGCGGCCGAGCAGCTCATCCGTCTTAGCGAGAGTAACGTGTCCTTGGGAACC
CCAAACG---TCCCCGTCTCCCCCTGTGTGGAGCTCTCAAGTCAGTCCTCCTCTCCTCCGCACTCCGCGAAGGCCCCGCC
TGTGCCACCGGCTCCTGGGGCAATAATTCTTGGCGGTTCCGAGGATTGGGAGGAAGATGAGCAGCATGAGGTGGCCGGGA
GGCAGCGGAGGGTGAAGCGCTACCGCCTGATCAGCGAGATCTACGCCGCGATGGAGCCAATTGGCGGGCACACCGGTAGC
AACCAT---AAGAAGAAGAGGGGGGAGTAGATGAGGAGAGATGAGAGAGGAGAGGG----ACATTCTTGTAATTCATGTG
ATTTCCAGGGCGTAGCTT-GTAGGTTGAGCTTGTAGTCCTCTCCTTCCTATCACCAGGAGGCAGAGTCTCTATCGTTATC
TTTCTCGCTGTTAAATCTT-ATCTTTGCATTAAGAGTTACTTGTTGGTTGG-G---------CTAGATCCGTCCATGGTG
GCTTGTGAACTTTGAGATGAATTGGTTTTGTTTTTCTCATACTTTGTTGCTAGCTGGCTAGGCGGGATCCCGGCTAACTG
GTCAT--------CTTTGCAGATGGATGGTCTCCCTGGCAAAGAGGATCAGATCAGCTC---------------------
------------TGTCCACCGCTGCATGACTGATCGATGCCTATGTGCATTCAACTTTGGCAATTAATTACTCCTAGGCA
CATGCGAGTCTGATTCGCAAAAATCTTGATTGAATGATTCAGTAAATTTGGTGTATTGTT--------------------
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>chr5D_1_TraesCS5D01G338600
ATAGAAGTGTCATAAGCATGACAGGAAAAAAATTCGTTCGGCCCAAAATGTCACGGATGTGTCTTTTTTTGTAGGATTTT
ACGCTTCAAAGCAACCCGAGCCTGGGTAAAAGAGAACTGTCCATCACCGTGCTGCCTTGCTACTTCTGCTCTTTGGGCAA
TGTGACCATCCCCTTGCCGAACCACAAAGGGGTAGCCCTGCCCCATGGGTGATCGTGCTTCCACGCCGACAGCCACAGAC
ATGCGTTCTACGTGGCAACTCGTTCGTGTTGGATTAAGGTTCAATGGTAATACAAGTGTAAAACCTTGGTCAGGCCAAAT
CTATTTAACACCATATTGATGTGTCCAAAAGAGCAAGGGGAAATAGAGAAATATGCAATTGTAACAACAAGTGTCTATAG
TATGAATATGCAATGATAACAAGGATTTTCTATATAATGTAATCTAAACTATGTGTATACCTAGCCATGTGAATGTGCAG
TGGTTACAACGAGTGTGAAACCAGGCCTGAAATAAGTTACATACCATAAATCATGATTGGAAAAAACTATGGTAGGGAAA
TCTATATCATAAACATACAACATGTGAGGACCATTAGCACGACACGTCGATGGTTGTCCTGACCCAACAATTTGTTGGAC
AAAACCAATTAGACGTGTTGCACGTTTGATTAACCAGACAACTCACAATGTGACACGCGTCC------------------
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--------ACACGGTGATGCGTATTTGCGTTGGATTGCAAGATAATGGTAATTACGCGTGAAACAGT-----TGTCATGC
CAAATCGATTCCAGGCTATGTCATTTATGGGAAACCATCTAGGGAAATAATTAAAACATTTCCAAAAATACAAGGGGAAA
ATAAAGAAATAAAAGCCAAGCCCCTCTCTGTCAGAAAACAATA--------------GGAACAACCAAAGAAAAGACTAG
AAGAGAGAGTGGAGGTGAAATTAGCCAGCACGCATGTCCAT-GCAACCAACCCACCCCAATCTCCCATGAAAAACCTACA
ACGCAAGGTACAATCGGTGAAGGGGAAGATGGAGCCGAAGCCCAAGAGGAAGAAGTCCTGGGCGGCGGCTCCAGCGGAGG
TGGAGGACTTCACAGCGCTTGAGCTGGAAGCGGCCGAGCAGCTCATCCGTCTTAGCGAGAGTAACGTGTCCTTGGGAACC
CCAAACG---TCCCCGTCTCCCCCTGTGTGGAGCTCTCAAGTCAGTCCTCCTCTCCTCCGCACTCCGCGAAGGCCCCGCC
TGTGCCACCGGCTCCTGGGGCAATAATTCTTGGCGGTTCCGAGGATTGGGAGGAAGATGAGCAGCATGAGGTGGCCGGGA
GGCAGCGGAGGGTGAAGCGCTACCGCCTGATCAGCGAGATCTACGCCGCGATGGAGCCAATTGGCGGGCACACCGGTAGC
AACCAT---AAGAAGAAGAGGGGGGAGTAGATGAGGAGAGATGAGAGAGGAGAGGG----ACATTCTTGTAATTCATGTG
ATTTCCAGGGCGTAGCTT-GTAGGTTGAGCTTGTAGTCCTCTCCTTCCTATCACCAGGAGGCAGAGTCTCTATCGTTATC
TTTCTCGCTGTTAAATCTT-ATCTTTGCATTAAGAGTTACTTGTTGGTTGG-G---------CTAGATCCGTCCATGGTG
GCTTGTGAACTTTGAGATGAATTGGTTTTGTTTTTCTCATACTTTGTTGCTAGCTGGCTAGGCGGGATCCCGGCTAACTG
GTCAT--------CTTTGCAGATGGATGGTCTCCCTGGCAAAGAGGATCAGATCAGCTC---------------------
------------TGTCCACCGCTGCATGACTGATCGATGCCTATGTGCATTCAACTTTGGCAATTAATTACTCCTAGGCA
CATGCGAGTCTGATTCGCAAAAATCTTGATTGAATGATTCAGTAAATTTGGTGTATTGTTTATTTGATTCTGGTAACACT
GAGGTGCACCTCACTGGTTTGGGAGTTACATTTCCTGCCGAAATGATTGCCGTGTGCACAGAGAACTATACATCAGTAGA
TATGGTGGAGGGCTGGAGGGCCGAGTCTCTTCATCCAATGGCGAGCATGTTCTTCGAATACAACCTTGCCTCGTCACATT
AGCTTGGTCGATTCAGGCAAGTCCA----CTTGCACGCGACATGATGGGATGTGGTCAATCTGGCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCCATGCGCATCCGGGGTGGGAGA
CAATGCAAGTAGCTAGCCACGAGAGAGATACACATCTTGCCTCTACGTGGTTCATTCGTTTTACACCAAGCGCTCGAGGT
TATAATCTGAGACAACTAGCTAAACTACATATAAATATATATTATACTAATCACATGTATGGAAAGGTGATCCTACAAAT
ATGATAGTTCGAGTCCGGAATGAGTTTTCGAGTGTTGGTGCAAGATGACAACTTTTGTTTGTAGTTCTAGTTCATAACTT
CAGATTGAGCGCACTAACAACGCACGCATGCATGTTTTCAGTTCCACCACAAAGTTCGATCGGCTGGTGTGAAGCAGGTT
ATATATTTTCCCTTGGAAGGTTGGTTCTAGCTCGTAGAAGAAAATAAAGATACAAAATAGAGTAGATTTCTACCATATAT
ACATATTTGCTTCATGGCATGGCTTAGTTTGTCAATGGGTTGGGATAACTGTGATGATGAGCATTTCGATAATTCCATAA
CTGGTACTAGCCAAACCAAAGGTT
>chr5A_246
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-----TTCTACATGGCAATGCGTTCGTGTTGGATTAAGACTCAATGGTAATACACGTGTAAAACCTTGGTTAGGCCAAAT
CTATTTCGTGCTATATTGGTGTGCCCAAAAGAGCAAGGGGACATAGAGAAATATGCAATTGTAACAACAAGTGTATATAG
TATGAATATGCAATGGTAACAAGGATTATCTATATAATGTAATCTAAACTATGTGTATACCTAGCCATGTGAATGTGGAA
CGGTTACAACGAGTGTGAAACCAGGCCTGAAATAAGTTACATACCATATATCATGATAGGAAATAACTATGGTAGGGAAA
TCTATAGCATGAACATACAACATCTGAGGACCTCTAGCGCCACACGTCGACGGTTC-CCTGACCCAACAATTCGTTGGAC
AAAGCCAATTAGACGTGTTACACGTTTGATTAACCAGACAACTCACAATGTGACATGCGTCC------------------
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--------ACACGGTGATGCGTATTTGCGTTGGATTATAAGATAATGGTAATTACGCATGAAACGGT-----TGTCATGC
CAAATCGATTCCAGGCTATGTCATTAATGGGAAACTACCTAGGGAAATAATTGAAACATTGCCAAAAATACAAGGG-AAA
ATATAGAAATAAAAGCCAAGCCCCTATCTCTCAGAAAACAAGAGGAAAAGGAGAAGGGGAACAACCAAAGAAAAGACTAG
AAGAGAGAGTGGAGGCGAAATTTGCGAACGCGCGCGTCCATGGCAACCCACCCACACAAATCTCCCATGAAAAATTTACA
GTGCAAGGTACAACCTGCGAAGGGGAAGATGGAGCCGAAGCCCAAGAGGAAGAAGTCCAGGGCGGCGACGCCAGCAGAGG
TGGAGGAATTCACGGCGCTCGAGCTGGAAGCGGCCGAGCAGCTCATTCGCCTTAGCGAGAGTAACGTGCCCATGGGCACC
CCACGCGTCCTCCCCGTCTCCCCCTGCATGGCGCTCTCAGGTCAGTCCTCCTCTCCTCCGCACTCTGCGAAGGCCACGCC
AGTGCCGCCATGTCCTGGCGCAATAATTCTTGGCGATTCCGAGGATTGGGAGGAAGATGAGGAGCACGAGGTGGCCGGGA
GGCAGCGGAGGGTGAAGCGCTACCGCCTGATCAACGAGATCTACGCTGCGACGGAGCCAATTGGCGGGCACATCGATAGC
ACCCAGAAGAAGAAGACGAAGAGGGAATAGACGAGGAGAGATGAGAGAGGAGAGGG----ACATTCTTGTAATTCATGTG
ATTTCCAGGGGATTGCTT-GTAGGTTGAGCTTGTAGTCCTCTCCTTCCTCTTACCAAGAGGCGAAGGCGCTATCATTATC
TTTCTCGCTGTCAAATCTT-ATCTTTGCAATAAGAATTAATTGTTGGTTGG-GGGCTTGGGGCTTGATCCATCCATGGTG
GCTTGTGAACTCTGAGATGAATTGGTTTTGTTTTTATCATACTGTGTTGCTAGCTGGCGAGGCGGGATCCCAGCTAACTG
GTCAT--------CTTTGTAGATGGATGGTCTCCCTTGCAAAGAGGATCAGATCAGCTCTAACCATGGTTGTGGCTTCAT
AGCTCACGATTCTGTCCGCCGCTGCATGACTGGTCGATGCCTATGTTTATTCAACTTTGGCAATTAATTACTCCTAGGCA
CATGCGAGTCTGATTCGCAAAAATCTTGATTGAACGATTCAGGTAATTTGGTATATTGTTTATTTGATTCTGGTAACGCT
GAGGTGCATCTCACTGGTCTGGGAGTTCAATTTCCTGCAAAAATTCTTGCCGTGTGCACAGAGAACTATACATCAGTAGA
TATGATGGAGGGCCGGAGTGCCGAGTCTCTTCATCTAATGACAAGCGTGTTCTTCGAATACAACCTTGCCTCGTCACATT
AGTCTGGTCGATTCAGGCAAGTCCAACTTCTTGCACGCGACATGATGGAATGTGGTCAATCCAACCGCTGGATCAGAGAA
AAGGGCACCTCCCGCGGGGGGATGATCTAGAAGAAGATAG----------------------------------------
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------------------------------------------------------CTTCCATGTGCATCTGGGGTGGGAGA
CAATGCAAGTAACTAGCCACGAGAGAGATAAACATCTTGCCTCTACGAGGTTCATTCCTTTTACACCAAGCCGT-GAGGT
TATAATCTGAGAGAAGTAGCTAAACTGCATATAAATATATATTATACTAATCACATGTATCAAAATGTGATCCTACAAAT
ATGATAGTTCATGTTCGTAATGAGTTTGCGATAGTTGGTGCAAGATGACACCTTTTGTTTGTAATTCTAGTTCAGAACTT
CAGATTGAGCGCACTCACAAT----GCATGCATGTTTTCAGTTCCACCACAAAGTTCAGTCGGCTGGTGTGAAGTAGGTT
ATATATTTTCCCTTGGAAGGTTGGTTCTAGCTTGTAGAAGAAAATAAAGAAACAT-ATAGAGTAGATTCCTACCATATCT
ACATATCTGCTTCATGGCATGGCTTAGTTTGTCAATGGGTTGGGATAACTGTGATGATGAGCATTTCGATGATTCCATAA
GTGGTACAAGGCAAACCAAAGGTT
>chr5B_253
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------------TGGCAACGCGTTCGTGTTGGATTAAGGCTCAATGATAATTAACAGTGTAAAACTTGGTCAGGCCAAAT
CTATTCCGGGCCATATTGATGTGTCCAAAAGAGCAAGGGGAAATAGAGAAATATGCAATTGTGACAACAAGT-TCTATAG
TATGAATATGCAACGGTAACAAGGACTGTCTATATAATGTAATTTAAACTATGTGTATACCTAGCCATGTGAATGCGCAA
CGGTAACAACGAGTGTGAAACCAGGCATCAAATAACTTACATACCATAAATCATGATAGGAAACAACTATGGTAGGGAAA
TCTATAGCATGTACATACAATGTGTGAGAACCTCAAGCGTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTACACAGTGACGCGTATTCGCATTGTAATACAGGATAATTGTAATTACGCGTGAAACGTGTTTCATGCCATGC
CAAATCTATTCCAGGCTATGTCATTTATGGGATGCCACCTAGGGAAATAATTCAAACATTTCCAAAAATCCAAGGGGAAA
ATAAAGAAATAAAAGCCAAGCCCCTCTCTATCGGGAAACAAGAGGAAAAGGAGAAGGGGAACAACCAAAGAAAAGACTAG
AAGAGAGAGTGGAGGCGAAATTATCCAACCCGCGTGTCCATGGCAACCCACCCACACTAATCTTCCATGAAAAACCTACA
GCGCAAGGTACAACCAGTGAAGGGGAAGATGGAGCCGAAGCCCAAGAGGAAGAAGACCAGGGCGGCGGCGCCAGCAGAGG
TGGAGGAATTCACGGCGCTTGAGCTGGAAGCGGCTGAGCAACTCATCCGCCTTAGCGAGAGCAGCGTGTCCTTGGGCACC
CTGCGCGTCCTCCCCGTCGCCCCCTGCGTGGCGCTCTCGGGTCAGTCCTCCTCCCCTCCGCGCTCCACGAAGGCCCCACC
AGCGCCGCCGGCTTCGGGCGCCATAATTCTTGGTGGTTCCGAGGACTGGGAGGAAGATGAGGAGCATGAGGTGGCCGGGA
GGCAGCGGAGGGTGAAGCGCTACCGCCTGATCAGCGAGATCTACGCCGCAACGGAGCCAATTGGCGAGCGCACCGGTAGC
AAACAA------AACAAGAAAAGGGAGTAGACGAGGAGAGATTAGTAAGGAGAGGC----ACCTTCTTGTAATTCATGTG
ATTTCTCGGGGGGTAGATCGTAGGTTGAGCTTGTAGTCCTCTCCTTCCTCTGACCGGGAGGCGGGG--------------
--------TGTTAAAACTT-ATCTTTGCACTAAGAAG-AATTGTTGGTTGGAG---------CTGAATCCATTCATGGCA
GCTTATGTACTCTGAAATGAATTGGTTTTGTTTGTTTCATACTGTGTTGCTAGCTGGCTAGACTGGATGTCTGCTAACTG
GTCCT--------ATTTGCAGATCGATGGTCTCACTCGAGAAGATGATCAGATCAGCTC---------------------
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>chr5D_1225
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-------------------------------------------------------------------------CCCCGCC
GGCGCCGCCGGCTAAGGGCGCCATAATTCCTGGCGGTTGCGTGGACTGGGAGGAAGATGAGGACGACGAGGTGGCCGGAA
GGCAGCGGAGGGTGAAGCGCTACCGCCTGATAAGCGAGATCTACGCCGCGACGGAGCCAATTGGAGAGCGCAGCGGCAGC
AGCCGG---AAG---AACAAGAAGGAATAGATGAGGAGAGATGAGAGGGGAGAGGGGCCAACCATCTTGTAATTCAAGTG
ATTGCTAGGGGGTAGCCT-GTAGTTCGAGC----AGTCCTCTCCTTGCTCTCGCCGGGAGG---AATCGCTATCACTTTC
GATCTAGCTGTAAAAGCTTCATCCTTGCAATAAGACTTGCTTGTTGGTTGGAG---------CTGAATCCATCCATGGCG
GCTTGCAAATTCTTAACTGAATTTATTTTGTTCCACA--------GTTGCTAGCTGGCTTGGCTGGATCTCGGCCGATCG
ACCGATGGACGGCCTTTGCAGATGGATGGTCTCCGCGGCGGAGAGGATCAGATCAG------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS------S-------S-------------------S--------------S-------------------------
------SSSS----------------------------------------------------------------------
---------------S-----------S---------------------------------------------------S
S--------------------------------------------------------S-----S----------------
------S---S---------------------SS----S-----------S----SS---------------S-------
---S---------------S-----------------------------------S------------------------
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------------------------------------S---------------------------S---------------
-------------------------------------S--------------S---------------------------
-----------------------------S-----------S--------------------------------------
---------------S-----------S-S---S--------------S------S-S----------------------
S------------S-S------------------------------------------S----------S-----S----
-------S-----S-----------------------------------S--------------------------S---
---SS---------------------S----S-------S----------------------------------------
S-----S-----------S------------------------------------------S------------------
---------------------------------------------------S----------------------------
-----S-------------S-S----------------------------------------------------------
----------S--------------------------------------S------------S-----S-----S-----
-----------------------------S-----S----------------------------S-----S---------
-----------S-------------------------------S------------------------------------
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-----------------S--------------S-------------SS--------------------------------
----------------------------------S-------SS--------S------------------------S--
--------S---------S--------SS---------SS----SS----------------------------------
----S--------S----S----------------S----S-S---S---------------------------------
--SS--------------------------------------------S------------SSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-----S-----------
-----------S------------------S----------------S---------S-------------SS-S-----
------------S--S----------S---------------------------------SS---S--------------
----------SS--S--S---------S---SS-----------------S------------S----------S-----
---------------S----SSSSS--------------------------------SS---------------S-----
--------------------------------S-----------------S---SS------------S---------S-
------S---------------------------------------------------------------S---------
S------S--S-------------
>forward_114
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--------------CCCGAGCCTGGGTAAAAGAG----------------------------------------------
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>reverse_1890
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-------------------------------------------------ATCACCAGGAGGCAGAGTCT-----------
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>forward_1230
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----------AAAAGCCAAGCCCCTCTCTG--------------------------------------------------
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>reverse_2419
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------------------GGCCGAGTCTCTTCATCCAA------------------------------------------
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