>input_sequence_66639
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----------------------------------CCTCGCAACACCATCCAATCCAAACCTCCCACTTGATCGCGCAGCG
ACACCACCGCGATATCC---------CTCTCCCG----TCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGC
GGCGGCCGCGCCAGCCGCTCCTCCTCCACCAAGTCGTCGTCGATGCCGCCGTCGCCCGCGCGCTCGCCCTCTGTGCGGGA
GGACGAGATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGGCCGAGCTGGCGGCGCTGT
TCGAGAGCGTGGGCCACGCAGTCACGGACGACGAGGTGACCCGCATGATGGAGGAGGCCGACGCCGACGGCGACGGCTAC
ATCAGCCTCGCGGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGT
CTTCGACGCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGCGGCCTCGGCGAGGCCGCCACCG
TCGCGCAGTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCCTTCGACGAGTTCAAGCTCATG
ATGGCCAACGGCAAAGGATTCGGCCTCGCCCAGGCCAACGTCCGCGCCTGAAAGACGTACGCGCAGTGCAC----CTCCC
GGTTG-----TTCCTTCATTCTTTTGCGAGACCGTGTAAATACGCCCGACGACGACCCACCGCGAAATACGTACTTACTA
CGTACTCCTACTCTATTAGCTAGTCGCAGATCACACGAACATTATCGGTGTGCCATT-ATTTTGCTGTACATATATAATG
TATCGGAACTGTCGGATCGGCACTGAAGAATAATCCTC------CATGTCGATT--------------------------
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>chr1D_1_TraesCS1D01G239000
GGTGATGCTCGCCACGCAA----GCGATCGACACGCCGCGCATCTGCAGCGGCCTCGCCGTTGGTGTAAACGACGGGCCG
CTCCTTCCCGTCGTCCCGTGCAGTCATGTCTCCCAACCAATCCAT------GACGACGACGACGACAGACACCTTGACAG
GACGGGGCGCCACCTCCTCCCCCGTCGTCTCACAGTAGACTCACAGCCACCACCAACGGGGTCCCGGCCCCCGGTTTCGC
GGGCACCAGCCGAGCGCGACGCGACCCACAGATCCCAGACCCCGCCGCGCGGGAGGCCTCCACGTCGCGCCCTGACCGCG
ACGCGGCAGCTAGGCAGAGGGCGTACGGAGCACCTAGCTACTAGTGCTAGCGCCCGGCAAAACGCGACAGAGAGAGCCCT
GGTAGCCG-----------CTGCGGGTCGCCCGGCCCGGCCTCGCTCACGGTCACGATCATGGCCACGTC----------
-----------GGTTCGGACGCGTACGGCCGATTTTTCCACCGCTTGATTCGTCTTGTAAAAAGGTCGTCGCGGCGCCGC
CGATGCTTTGCTGCGTGTGACAA---ACGACGATGCTTTCACGACTTGGCTTGCACCGCACGCGTGGTCGTTCGCGCCGC
GGTAAACAAACAAAGAAAGAAAACATATACCAAAGGAGTCCCGATAGGGG-----CCGCCACCGCCGCTGTACGCGCTCC
CGCCGCAAAGCTCCATCCAGCAGTCGGTATTCCCCCGC----CCCCGCCGCAAAAACAGGGGCGCGCGTCCA--------
-----------GGCATGGCAGCCCTATCCGTATGGGAGCAACCAAAACCCAACGGAAAAGACGCGCAAACAACTCCGTCC
GCGCCACTCCGAAAGGTTAGGCGTCGGGAAGGCTCCGGACCCCCGCTGGCCCCCACCTGTCAGCCCCGCCGCCGCTCACG
CGCAACCGAATCCTTAACGGCAGCAACAACCCAAAAACCGCGTCCTCCCTCCCCGCGCGCCTATAAGTACGCCCCGCCTC
CAAC-ATCCAGATCCTCATCAACCCGCCTGTTAACCTCGCAACACCATCCAATCCAAACCTCCCACTTGATCGCGCAGCG
ACACCA---------CCGCGATATCCCTCTCCCG----TCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGC
GGCGGCCGCGCCAGCCGCTCCTCCTCCACCAAGTCGTCGTCGATGCCGCCGTCGCCCGCGCGCTCGCCCTCTGTGCGGGA
GGACGAGATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCCGGATCTCGCGGGCCGAGCTGGCGGCGCTGT
TCGAGAGCGTGGGCCACGCAGTCACGGACGACGAGGTGACCCGCATGATGGAGGAGGCCGACGCCGACGGCGACGGCTAC
ATCAGCCTCGCGGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGT
CTTCGACGCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGCGGCCTCGGCGAGGCCGCCACCG
TCGCGCAGTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCCTTCGACGAGTTCAAGCTCATG
ATGGCCAACGGCAAAGGATTCGGCCTCGCCCAGGCCAACGTCCGCGCCTGAAAGACGTACGCGCAGTGCAC----CTCCC
GGTTG-----TTCCTTCATTCTTTTGCGAGACCGTGTAAATACGCCCGACGACGACCCACCGCGAAATACGTACTTACTA
CGTACTCCTACTCTATTAGCTAGTCGCAGATCACACGAACATTATCGGTGTGCCATT-ATTTTGCTGTACATATATAATG
TATCGGAACTGTCGGATCGGCACTGAAGAATAATCCTC------CATGTCGATTTTTATGTCAGCTTGTGTATTTGGCGT
CAAAATTTCACTTCTGC----TCATCAGATAATGTCCGTGAGTCT--------CGTAGTATAAATGTATAATGCTTCCGC
TTTCTGCAGTTTTATGTCAAAATTCTATTACAACTCCCGGCCGGATGACTTTGTGAAGTTATGAAGGGGGAGCGAGCTTC
ATGTGA-ATATACGAACCTGTAAATGAAAGGGACATGTTCGATGTGACCCAGGCTGGCTCGCTGCCGTTGTT--------
GACAATCATTCTG-CCGAGCAGCGTGAACAACAAAACCTCAAGTTGTAGCCCAAACTTGCAATACCTCTGATGAAATTGA
CATTTGAGCTAAA-GCTGCAGTTCTAAAAACAATGACACGACGCCAAGAATCTAGATTCCGTTAA---------------
---------------------------------------------------------------TTTTATACTCGTAT---
-----CATAAGGTTTTACC---------------------------------------TGTTTATTGAACAGGTGGAGTT
TACTGTTGGATATGAGTATTGATTGACGATGACTTGGTACA--------------------ATTTTTTACTGTCAAAAAT
AGGTGCCCTGGTGCAATTGTA-AGGTTGTAGACTTG------TAGTACCCCCGACAATTAATGGCTCAATGGCCCTGAAC
TTTCGAAGCTTACCGGTACTATGGATAGACGGTTTGACACTGATAGTGCATCAACAACAAATTGATGGATACCAACAATA
CTGGAGTACCCATGATACCGCGTCCGAAAAAAAGGGAAAT-----AGTACCATGATCGTC-TGTAGAACATGCAGATGAC
GCTACCGCGCTAGGAGGATATCATATCAGACCACGCGTAGGGACAGACAGCCCACGACCTCCCCATCTTCACTGAGATCA
CGCAGCCGCCGGGACAGATAACCCACGAGAGGCCTAGCCCCTCATCTTCAGCAACATTCCAGTTGGAACATGCATGCCT-
-TCAGAAAGGTCCAGCTCTAACAAGATCATCTA---GCATGCAGTGTCTCATTCCAGAGGCAATTAGTAGAAAAAGGCAA
GTGGCGGCTG-------------------------------GCAAGAACATATGGCCCAAGTGGCAATTAT
>chr1A_1
GGTGATGCTCGCCACGCAA----GCGATCGACACGCCGCGCATCTGCAGCGGCCTCGCCGTTGGTGTAAACGACGGGCCG
CTCCTTCCCGTCGTCCCGTGCAGTCATGTCTCCTAACAAATCCACAACGACGACGACGACGACGACATGGC----GATAG
GACGTGGCACCACCTCCTCTCCCGTCGTCTCACAC-----------CCACCACCAACGGGGCCCCGGCCCCCGGTTTCGC
AGCCACCAGCCGAGGGCGACGCGACCCACAGATCCCAGGACCCGCCGCGCGGACGGCCTCCACGTCGCCCCCGGACCGCG
ACGCGGCAGCTAGCCAGAGAGCGTACGGAGCACCCAAGCTAGTGC-CTACCGCCCGGCAAAACGCGACAGAGAGA--CCT
GGTAGCCGCTGCGGGTCGCCTGC-----------CCCGGCCTCGCTCACGGTCGCGATCACGGCCACGTAGGCCCGGCAC
AGTGAGCAAGTGGTTTGGACGCGTACGGCCGAATCTTC-ACCACC----TCGTATTGTAAAAAGGTCGTCGCGGCGCCGC
CGATGCT-----GCGTGTGACAA---ACGAGGCTTG----ACGACTTGGCTTGCACCGCACGCGTGGTCGGTAGTT-CGC
GGTAAAGAAAGAAACAAAGAAA--------CAAAGGAGTCCCGGTAGGATAGGTACCGCCACCGCCGCTGTACGCGCTCC
CGCCGCAAAGCTCCAGCCGGTAGTCGGTATTCCCCTGCTCCTCCCCGCCGCAAAAACAGGGGCGCGGGTCGCGTCCGCCA
TGCCCTGGCATGGCATGGCGGCCCTATCCGTATGGGAGCAA----AACCCAACGGAAAAGACGCGCAAACAACTCCGTCC
GCGCCACTCCGAAAGGTTAGGCGTCGGGAGCCTTCCCGACCCCCGCTGG-CCCCACCTGTCAGCCCCGCCTCCGCTCACG
CGCAACCGAATCCTTAACGGCAGCAACAACCCAAAA-CCGCGTCCT-CCCGCTCTCCCTCCTATAAGTACGCCCCACCTC
CAAC-CTCCAGATCCTCA---ACCCGCCTGTTAACCTCACAACATCATCCAATCCAGACCTCCCACTCGATCGCGCAGCG
ACAGCA---------CC---------CTCTCCCG----TCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGC
GGCGGCCGCGCCAGCCGCTCCTCCTCCACCAAGTCATCGTCGACGCCGCCGTCGCCGGCGCGGTCGCCCTCTGTGCGGGA
GGACGAGATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCAGGATCTCGCGGGCCGAGCTGGCGGCGCTGT
TCGAGAGCGTGGGCCACGCGGTCACGGACGACGAGGTGTCGCGCATGATGGAGGAGGCCGACTCGGACGGCGACGGCTAC
ATCAGCCTCGCCGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGT
CTTCGACGCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGCGGCCTCGGCGAGGCCGCCACCG
TCGCGCAGTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCCTTCGACGAGTTCAAGCTCATG
ATGGCCAACGGCAAAGGCTTCGGCCTCGCCCAGGCCAACGTCCGCGCCTGAACCAACCTCAAGACGTGCACTCGGCTACC
GGTCGCTTGTTTCCTTCATTCTTTTGCGAGACCCTGTAAATAC--------------CACCGCCAAATACTTACTACGTG
----------CTCTATTAGCTAGTCGCAGATCACACGAACATTATCGGTGTGCCATT-ATTTTGCTGTGTATATATAATG
TATCGGAACTGTCGGATCGACACTGAAGAATAATCCTC------CATGTCGATTTTTATGTCAGCTTGTGTATTTGGCGT
CAGATTTTCACTTCTTCTCATTCATCAGATAATGTCCACGAGTCTCGTAGAGTCGTA--------GTATAATGCTTCCGC
TTTCTGCAGTTTTATGTCAAAATTCT------ACTCCCGGCCGGATGACTTTGTGAAGTTATGAAGAGGGAGCGAGCTTC
ATGTGAGATATACGAACCTGTAAACGGAAGGGACATG-TCGATGTGACCCAGGCTGGCTCGCTGCCGTTGTTTTCGTCAA
GAGAATTATTCTGCCCGAGTAGCGTGAACAACAAAACCTGAAGTTGCAGCCCGAACTTGCAATACCTCTGATGAAATTGA
CGGTTGAGCTAAA-GCTGCAGTTCTAAAAACAATGACACGACGCCAAGAATCTAGATTCCGTTAA---------------
---------------------------------------------------------------TTTTATACTCGTAGCAA
TGTAGCATAAGGTTTTACC---------------------------------------TGTTTATTGAGCAGGTGGAGTT
TACTGTTGGATATGAGTATTGATTGACGATGACTTGGTACA--------------------ATTTTTTACTGTCAAAAAT
AGGCGCCCTGGTGCAATTGCATAGGTTGTATACTTGTAGTACTAGTACCCCCGACAATTAATGGCTCAATGGCCCTGAAC
TTTCGAAGCTTACCGGTA---TGGATAGACGGTTTGACACTGATAGTGCGTCAGAAACAAATTGA---------------
-TGGAGTACCCATGATACCGCGTCCGAAGAAAAGGGAAATGGAGTAGTACCATGATCATC-TGTAGAACATGCAGATGAC
GCTACCTAAGAGGAT-------ATATCAGACCACGCGTAAGGACAGACAGCCCACGACCTCCCCATCTTCACTGAGATCA
CGCAGCCGCCGGGACAGATAACCCACGAGTCACCTAGCCCCTCATCTTCAGCAACATTCCAGTTAGAACATGC---CTTC
ATCAGAAAGGTCCAGCTCTGACAAGATCATCTACTAGCATGCAGTGTATCATTCCACAGGCAATTAGTAGAAC-AGGCAA
GTGGCGGCTCGCAAGAACATATTTTTTTTTCGAAACGGCGCGCAAGAACATATGGCCCAAGTGGCAATTA-
>chr1B_1
GGTGATGCTCGCCACGCAAAGAAGCGATCGACACGCCGCGCGTCTGCAGCGGCCTCGCCGTTGGTGTAAACGACGGGCCG
CTCCTTCCCGTCGTCCCGTGCAGTCATGTCTCGCAACCAATCCAT------GACGACGA---------------------
-------CGCCACCTCCTCCCCCGTCGTCTCACAC-----------CCACCACCAACGGGGCCCCGGCCCCCGGTTTCGG
GGGCACCAGCCGAGCGCGACGCGACCCACAGATCCCAGACCCCAACGCGCGGAGGGCCTCCACGTCGCGCCCGGACCGCG
ACGCGGCAGCTAGCCAGAGAGCGTACGGAGCACCTAG-------------CGCCCGGCAAAACGCGACAGAGAGAGCCCT
GGTGGCCG-----------CTGC-----------GCCGGCCTCGCTCACGGTCGCGATCATGGCCACGTC----------
-----------GGTCTGGACGCGTACGGCCGATTTTTC-ACCGCTTGATTCGTTTCGT-AAAAGGTCGTCGCGGCGCCGC
CGATGCTTTGCTGCGTGTGACAAACGACGAGGCTCG----ACGACTTGGCTTGCACCGCACGCGTGGTCGTTCGCGCCGC
GGTAAAGAAAGAAAGAAAGAACAAAAAAG-CAGAGGAGTCCCGATAGGATAGGTACCGCCACCGCAGCTGTACGCGCTCC
CGCCGCAAAGCTCCAGCCGGTAGTCGGTATTCCCCCGC----CCCCGCCGCAAAAGCAGGGGCGC-------------CA
TGCCATGGCATCCCTGT----CCCTATCCGTATGGGAGCAA----AACCCAACGGAAAAGACGCGCAAACAACTCCG---
-------TCCGAAAGGTTAGGCGTCGGGAAGGCTCCGGACCCC-GCTGGCCCCCACCTGTCAGCCCCGCCGCCGCTCACG
CGCAACCGAATCCTCAACGGCAGCAACAGCCCAAAAACCGCGTCCT-CCTTCCCTCCCTCCTATAAGTACGCCCCGCCCC
CCAAGCTCCAGATCCTCA---ACCCGCCTGTTAACCTCACAACATCATCCGATCCAAACCTCCCACTTGATCGCGCAGCG
ACAGCA---------CCGCCACCACATCCATCTCCCTCTCCATGGGCAAGATGCGCGCGCTCTTCTCCCGCAGCCGCAGC
GGCGGCGGCAGCCGGCGCTCCTCCTCCTCCAAGTCGTCGTCGATGCCGCCGTCGCCCGCGCGCTCGCCCTCTGTGCGGGA
GGACGAGATGGAGCGCGTGTTCCGCAAGTTCGACGCCAACGGCGACGGCAGGATCTCGCGGGCCGAGCTGGCGGCGCTCT
TCGAGAGCGTGGGCCACGCGGTCACGGACGACGAGGTGTCCCGCATGATGGAGGAGGCCGACTCGGACGGCGACGGCTAC
ATCAGCCTCGCCGAGTTCGCCGCCATCAACGCCGCGCCCGACGCCGCCGTCGAGGAGGACCTCCGGCACGCCTTCCGCGT
CTTCGACGCCGACGGCAACGGCGTCATCTCCCCCGCCGAGCTCGCGCGCGTGCTGCGTGGCCTCGGCGAGGCCGCCACCG
TCGCGCAGTGCCGCCGCATGATCGAGGGCGTCGACCGCAACGGCGACGGCCTCGTCTCTTTCGACGAGTTCAAGCTCATG
ATGGCCAACGGCAAAGGATTCGGCCTCGCCCAGGGGAACGTCCGCGCCTGAACC----TCAAGGCGTGCACTCGGCTCCC
GCTTG-----TTCCTTCATTCTTTTGCGAGACCGTGTAAATACGCCCGACGACGACCCACCGCGAAATACTTACTACTCT
ACG----------TATTAGCTAGTCGCAGATCACACGAACATTATGGGTGTGCCATTAATTTTGCTGTATATATA-----
--TCGGAACTGCTGCATCGACACTGAAAAACCAGCTCCATGTCACATGTCGATTTTTATGTCAGCTTGTGTATTTGGCGT
CAGATTTTCACTTCTGC----TCATCACATAATGTCCTTGAGTCT--------CGTA--------GTATAATGCTTCTGC
TTTCTGCAGTTCTATGTCAAATTATATCTTCAACACCCGGCC------------------------------------TC
ATGTGA-ATATACGAATCTGTATATGAAAGGGACATG-TCGATGTGACCCAGGCAGGCTCGCTGCCGTTGA-TTCGTCAA
GACAATCATTCTGCCCGAGTAGCGTGAACAACAAAACCTCAAGCTGTAGCCCAAACTTGCAATACCTCTGATGAAATTGA
CAGTCGAGCTAAAGGCTGCAGTTCTATAAACAATGACACGACGCCAAGAATCTAATTCCATGTTGCGCAAAACAGAACAA
AAAAGAATCTAAATTCCATGTATTGTTTATAATCCGTTTTGCTAAAGAACATCTAGATTATTCTTGTTTATTCGTAA---
-----CATAAGATTTGCGTGCATCGGTTTTTGCCCGGTTTTCGAAAAAAAGATTTGCGTGCTTGTCGAACAGGTGGAGTT
TACTAGTGGATCTGAGTGATGACTGGGCGGTGAAGATGATCGTATGGAATACACGAACATGATTTTTTACTATGAAAAAT
GTAGGTGCTGTGGTGC----A-AGGTTGTAGACTTG------TAGTACCCCCGACAATTAATGGGTCATTGGCCCTGAGC
TTCCGGAGTTTACCTGTT---TGGATAGACGGTTTGATGCTGATAGTGCATCAGCAACAAATTGATGGATACCAACAATA
CCGGAGTACGCATGATACCGCGTCCGAAAAAGAGGGAAAT-----AGTACCATGATCGTAATGTAGAACATGCAGATGAC
GCTACCGCGCTAAGAGG-----ATATCAGACCACGCGTAGGGACAGACAGCCCACGACCTCCCCATCTTCAGTGAGATGA
CGCAGCCGCCGGGACAGATAACCCACGAGCTACCTAGCCCCTCATCTTCAGCAACAATCCA-TTAGAACATGC---CCT-
-TCAGAAAGATCCAGCTCTAACAAGATCATCGACTAGCATGCAGTGTCTCATTCCACAGGCAATTAGTAGAAC-AGGCAA
GTGGCGGCTG-------------------------------GCAAGAACATATGGCCCAAGTGGCAATTA-
>SNPs
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-------------------------------------------------------------------SSSSSSSS--S--
----S-----------------------------SSSSSSSSSSSS---------------S------------------
----------------------------------------------------SS------------------S-------
-------------S-----S-----------------SSSSSS-SS---S------------------------------
-----------------------SSSSSSSSSSS-------------------S--------------------------
---------------S----------------------S--------------S--------------------------
------------------------------S-S-SSSSSS----------------------------------------
------S---S------------S-S-SSS------------------SS------------------------------
---------------S--S-S---------------------------------------------S---SS--------
-------------------S---------------------SSSS-----------------------------------
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----------------------------------------------S---S---S-S-S---------------------
-----S------------SSS-----------------S-----S-----------------------------------
---S---------------S-SSS-S------------------------------------------------------
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-------------------------------------------------S------------------------------
-------------------S------------------S-----------------------S-S---------------
-----------S--------------------------------------------------------------------
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----------------------------------------------------SS-SSSS-SS-SS---------------
----------------------------------------------------------------------S----SSS-S
SSSSSSSSSS-----------------------------------------------------------S----------
-------------------S------------------------------------------------------------
--S-S--------------------------------S-------------------SSSSSSSS---------------
--------------------------SS-S------------------------------------S-------------
-------------------------------------S------------------------------------------
-------------------S------------------------------------------------------------
--S-----------------------------------------------------------------------------
----------------------------------------------------------------------------S---
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---S---------------S------------------------------------------------------------
------------------SSS--------------------------------S--------------------------
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-----------------SSSSS----------------------------------------------------------
-----------------------------SSS--------------------------------S--------SSS----
--------------------------------------------------------S---------------SS------
----------------------------------------------------------------------S
>forward_158
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----------------------------------------------------------ACGACGACAGACACCTTGAC--
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>reverse_1142
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---------------------TATCCCTCTCCCGTCCATGG---------------------------------------
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>forward_1085
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-------------------------GCCTGTTAACCTCGCAACAC-----------------------------------
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>reverse_2992
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-------------------------------GCCTAGCCCCTCATCTTCAG-----------------------------
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