>input_sequence_66627
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-------------------------------------------ATGAAAGGAGTATGGCAACTGAAGGTCCGCCATGTGT
ATGCATCTTATCTACGTCAACAGGAGAATGGAAAACT-AAGAGTGTCTCTCTCCCTGATTATCTTACTTCCTGGA--TGG
GACATTCATACAGTGCTTGCAAATGAAAATAGTTTTTGGTGGGTGGATTTGTGCTGTGGAATCCTCTCTTATGATCTTGA
CCAGCACCAATCTGCTCTTGGGTTCATCCCAGTTCCAACAGCATGTTTAGAGGATGGGTACAGACAAGA---TCGTTTTG
TCAGCATCAGCACAGGAGAACTTAGGTTTGTCCATATCTTTAGGAAAGACGATCTTTTCTGTGATTATGGTATCAAGTCA
CAGCAGTGCGAAGATTATGTCAAGACTTGGAGTTGGAGAGATGGGCAGCGGGTTGAAGAGTGCGAGATGAAATTTGCAGA
TTTTTGGGAAGGCACAAGCTATTCTTCAAGTCGTCTACCGAAGTTTGTACCATCATATCCTACTGTTGATCCTTGCAATC
ATAATCTGGTAAACTTTTACTTACCAACTGGCCAACGTTTTGATGGTCATGTAATTTGTGTCGATTTGCCCTCTATGGAG
ATCAAATACTGTGGCAAAGTACGCGAGGGCTTACTTCACGGGCTACGCCTAGAAATATTTGAGTTTTCAGGTGTTTGGAA
TGTGTATGAACTTTTTTTCCCACCCACATGATTTACTTGCCTTTGCCATGATGCACTTTTGATCTCAAATTTTTGTAA--
--GTTGTATAACGCTGCTGCTCATTATTGCAGAAGAAGGAGCAAAGGAGGATCAGCAGCAGCAGGAGTCCTGGGAGA---
--------GGTAAAGAGACTGCACTGAAAACAAAGCATCGTCGGCTGGAGGCCTAA------------------------
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>chr4D_1_TraesCS4D01G221400
GTGCGGCGTGATGGCGGGGCGGCTGGTGTCGGTTCCGTCAGATCTGGCGCTTGGAGTCGCGGGCTGTGAGCAGCGAGGAC
CGGTGTCCTCCGTCGTGGCGGCGATGGCGTCGGCGTGATTGAGGCAGCGGTGTGGCGGCGGTCCTTTTTCTCTTGTCGCA
TCACGGCAAAGATCTGCATGATCGGTCCTCCTCGATCTGCATGCTTCCTGTGGGCGTAGACTTATCTAAATTTAGGACCC
AAATGTGCATTTTCGTACTTATAGGACCCAGCTGACACACTTCAAATACTTTTAGGATCTCCGATGCATTTTGCGCTTTT
TATTAGATAAGGC--CTCTAATACACCGAATATTTGAGTTCTCAAAGGTTCGCTTTCTCAATGTCCCAAGGGCTTAAGTG
GCTAAATCTTGCCTTTTGCAGTTGGAGATAATAGCATACTACACTGAAAATTTTGTTAATTGGTCCTTTATAATCTTATT
ACTGCTCTAACTTTGTTCTTCCGTTGACTGTATTACAGCAAAATGAGCCAACGTTATTTCTCGACTGTCTTGTGTATGGA
GAAACATCATCACTGGGCACTGATAACAAAATATGGATAGGTGCAGAGACGAGTGACGGTATAAACTTTAAAATCTCATT
ATGCACTGAAGCACCGCCTGGTTTTTCTCATCTCTTTCTTAAGACGGATGATGCAGTGGCTGTTACCCCCACCAGCACCG
TGTTTCGTGACGGTGTGAAAAAGAAGTTGCGTGCTGAAGCCCTGGCATCTTGTTACAATGCTATTCTGATGCAGACTATT
GTTGATACTCAGACCTATCCTTATTTCTATCACGATTATTTTTT-GCTTAAGAATGATGTGCCATCTCCAGTTATATCTC
GTCTTCCTGAGATTCCTGGTGGTCCTGACCTTAATTTTGGCCTCCTGCATCAGAGTGGTCATTACACAGTGGCTGTGTTG
AAGGAAGGCATGCCATTGACAACTGCAAGGTCTTCTTCCGTATATGAAAGGAGTATGGCAACTGAAGGTCCGCCATGTGT
ATGCATCTTATCTACGTCAACAGGAGAATGGAAAACT-AAGAGTGTCTCTCTCCCTGATTATCTTACTTCCTGGA--TGG
GACATTCATACAGTGCTTGCAAATGAAAATAGTTTTTGGTGGGTGGATTTGTGCTGTGGAATCCTCTCTTATGATCTTGA
CCAGCACCAATCTGCTCTTGGGTTCATCCCAGTTCCAACAGCATGTTTAGAGGATGGGTACAGACAAGA---TCGTTTTG
TCAGCATCAGCACAGGAGAACTTAGGTTTGTCCATATCTTTAGGAAAGACGATCTTTTCTGTGATTATGGTATCAAGTCA
CAGCAGTGCGAAGATTATGTCAAGACTTGGAGTTGGAGAGATGGGCAGCGGGTTGAAGAGTGCGAGATGAAATTTGCAGA
TTTTTGGGAAGGCACAAGCTATTCTTCAAGTCGTCTACCGAAGTTTGTACCATCATATCCTACTGTTGATCCTTGCAATC
ATAATCTGGTAAACTTTTACTTACCAACTGGCCAACGTTTTGATGGTCATGTAATTTGTGTCGATTTGCCCTCTATGGAG
ATCAAATACTGTGGCAAAGTACGCGAGGGCTTACTTCACGGGCTACGCCTAGAAATATTTGAGTTTTCAGGTGTTTGGAA
TGTGTATGAACTTTTTTTCCCACCCACATGATTTACTTGCCTTTGCCATGATGCACTTTTGATCTCAAATTTTTGTAA--
--GTTGTATAACGCTGCTGCTCATTATTGCAGAAGAAGGAGCAAAGGAGGATCAGCAGCAGCAGGAGTCCTGGGAGA---
--------GGTAAAGAGACTGCACTGAAAACAAAGCATCGTCGGCTGGAGGCCTAATTGGACCATTCTTATCCTGCTTTG
AGTTGGCCCAAACAGCACACGGGAAAACGGGCTAGGCCCATTGAATAATGTCTTCTAAAA-AAAAGTGATAAACAAAAAA
AATTATATAGTACAGAAAAATACAGGGAAACAAAAATTTGCAACGTGCCATGCTCTATTATATAAAAGTTTCCATGTTAT
ACAATTTGAAACTGGGAAAAAG-TTATGAA-TTTTTAAACATGCCACGCGGCAAAATTTACACATGTTTTGTAATGTACA
TACGACAATAAATTTCATGTTTTAAGATGGAAAATTTCTTGCATTTTGGTGTATATGACAAGGCAATTTTCGGAATTTTT
TCTAATAGTCAGTTGGCAAATTTTAGATTTTTTATTTTTAATAATTTTTTCTACACATGGCAAATTTAGAATTTTTCTCC
TGGTCACAAGGAAATTTAATGGCAAATTTAGTTCTTGTAATTTTCCTATGGCAAGCTTGCGTTCTTTTTCCCCCAGAACC
ATGACAATTTTGGAAAATGTTTCTACTTTGTCACATGGCAATTTTACATTCTTTTTTGCTTTTTGCTAAATTTGTAATGA
AGTTAACACGAGGGAATTTCTTTTAAGTAAATTACCAAAAACTGAATTTGCCAAGGCGGTGAAATTAAATTTGCCATGGT
CCAGAGAAAAACTAAATTGCAATGGCTCTTG------------AAATAAATTTGCCATGGTCTGTCAATGCAAATTGCCA
TGATCTAGCAATGCAATTTTCATAAAATTTTGACTTTTTTTACCATGGATGTAAAACTTGCCATGGTCTAGCAAGGCAAT
TTGCCATGGCCCTGAAAAGTTTGAATGTAAAATTTG-----------TTTAATTCTTTATCAGATCATAAAAACCTACTT
TTCAAAGATTAACTAATCTAAAGAAAAAACAAACAAGGAATTATCCCCTCTTCTTATATTACTGCTTTTCACTTTGTTCA
TTGGATTCATAGGCCGTGGTGAAGGAAAAAGTCAATCATGGC
>chr4B_201
ATGGTTCAC-----------------------------------------------------------------------
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-------------------------------------------------GTGGACGTAGACTTATCTAAATTTAGGACCC
AAATGTGCATTTTCGTACTTATATGACCCAGCTGACACACTTCAAATACTTTTAGGACCTCCGATGCATTTTACGCTTTT
TATATTAGATACGGTCTCTAATACACCGAATATTTGAGTTCTCAAAGGTTCGCTTTCTCGATGTTCCAAGAGCTTAAGTG
GCTAAATCTTGCCTTGATACGTCATG-----TAGCATACTACACTGAAAAGTTTGTTAATTGGTCCTTTATAATCTTATT
ACTGCTCTAACTTCGTTCTTCCATTGACTGTATTACAGCAAAATGAGCCAAAGTTATTTCTCGGCTGTCTTGTGTATGGA
GAAACATCATCTCTGGGAACCGATTACAAAATATGGATAGGTGCAGAGACGAGTGACGGAATAAACTTTAAAATCTCATT
ATGCGCTGAAGCACCGCCTGGTTTTTCTCATCTCTTTCTTAAGACGGATGATGCAGTGGCTGTTACCCCCACCAGCACCG
TGTTTCGTGACGGTGTGAAAAAGAGGTTGCATGCTCAAGCCCTGGCATCTTGTTACAATGCTATTCTGATGCAGACTATT
GTTGATACTGAGACCTATCCTTATTTCTATCACGATTATTTTTTTGCTTAAGAATGATGTACCATCTCCAGTTATATCTC
GTCTTCCTGAGATTCCTGGTGGTCCTGACCTTAATTTTGGCCTCCTGCATCAGAGTGGTCATTACACAGTGGCTGTGTTG
AAGGAAGGCATGCCATTGACAACTGCAAGGTCTTCTTCCGTGTATGAAAGGAGTATGGCAACTGAAGGTCCGCCATGTGT
ATGCATCTTATCTACGTCAACAGGAGAATGGAAAACTTAAGAGTGTCTTTCTCCCTGATGATCTTACTTCCTGGAATTGG
GACATCCATACAGTGCTTGCAAATGAAAATAGTTTTTGGTGGGTGGATTTGTGCTGTGGAATCCTCTCTTATGATCTTGA
CCAGCACCAATCTGCTCTTGGGTTCATCCCAATTCCAACAGCATGTTTAGAGGATGGGTACAGACAAGA---TCGTTTTG
TCAGCATCAGCACAGGAGAACTTAGGTTTGTCCATATCTTTAGGAAAGACGATCTTTTCTGTGATTATGGTATCAAGTCA
CAGCAGTGTGAAGATTATGTCAAGACTTGGAGTTGGAGAGATGGGCGGTGGATTGAAGAGTACGAGATGAAATTTGCAGA
TTTTTGGGAGGGCACAAGCTATTCTTCAAGTCGTCTACCGAAGTTTGTACCAGCATATTCTACTGTTGATCCTTGTAATC
ATAATCTAGT--ACTTTTACTTACCAACTGGCCAACATTTTGATGGTCATGTAATTTGTGTCGATTTGCCCTCTATGGAG
ATCACATACTGTGGCAAAGTACGCGAGGGCCTACTTCACGGGCTACGGCTAGAAATATTTGAGTTTTCAGGTACTTTGAA
TGCGTTTGAAC-TTTTTTCCTGCCCACATGATTTACTTGCCTTTGTCGTGATGCACTTTTGATCTCACAATTTTTTAATT
AGGTTGTATAACGCTGCTGCTCATTATTGCAGAAGCAGGAGCAAAGGAGGATCAGCAGCAGCAGGAGTCCTGGGAGATGG
CTGTGTCTGGTAAAGAGACTGCACCAAGAACAAAGCATCGTCGGCTGGAGGCGTAATTGGGCCATTCTTATCCTGCTTTG
AGTTGGCCCAAAGAGCACACGGGAAAACGGGCTAGGCCCATTGACTAATGTCTTTT-AAA-AAAAGCCATAAACAAAAAA
AAT--TATAGTACAGAAAAATACAGGGAAACAAAAATTTACAACTTGCCGTGCTCTAATATATAAAAATTTCTATGATAT
ATTATTTGAAACTAGGAAATTTTTTATGAA-TTTTTAAACATGCCACACGGAAAAAATTTA-------------------
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>chr4A_650
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-----------CACCGCCTGGTTTTTCTCATCTCTTTCTTAAGAAGGATGATGCAGTGGCTGTTACCCCCACCAGCACCG
TGTTTCGTGACGGTGTGAAAAAGAGGTTGCATGCTGAAGCCCTGGCATCTTGTTACAATGTTGTTCTGATGCAGGCTATT
GTTGATATA-AGACCTATCCTTATTTCTATCACGATTATTTTTT-GCTTAAGAATGATGTGCCATCTCCAGTTATATCTC
GTCTTCCTGAGATTCCTGGTGGTCCTGACCTTAATTTTGGCCTCCTGCATCAGAGTGGTCATTACACAGTGGCTGTGTTG
AAGGAAGGCATGCCATTGACAACTGCAAGGTCTTCTTCCGTATATGAAAGGAGTATGGCAACTGAAGGTCCGCCATGTGT
ATGCATCTTATCTACGTCAACAGGAGAATGGAAAACT-AAGAGTGTCTCTCTCCCTGATGATCTTACTTCCTGGAACTGG
GACATTCGTACAGTGCTTGCCAATGAAAATAGTTTTTGGTGGGTGGATTTGTGCTGTGGAATCCTCTCTTATGATCTTGA
CCATCACCAATCTGCTCTTGGGTTCATCCCAGTTCCAACAGCATGTTTAGAGGATGGGTACAGACAAGAAGATCGTTTTG
TCAGCATCAGCACAGGAGAACTTAGGTTTGTCCATATCTTTAGGAAAGACGATCTTTTCTGTGATTATGGTATCAAGTCA
CATCAATGTGAAGATTATGTCAAGACTTGGAGTTGGAGAGATGGGCGGTGGGTTGAAGAGTGCGAGATGAAATTTGCAGA
TTTTTGGGAAGGCACAAGCTATTCTTCAAGTCGTCTACCGAAGTTTGTACCATCATATCCTACTGTTGATCCTTGCAATC
ATAATCTGGTAAACTTTTACTTACCAGCTGGCCAACGTTTTGATGGTCATGTAATTTGTGCCGATTTGCCCTCTATGGAG
ATCAAATACTGTGGCAAAGTACGCGAGGGCTTACTTCACGGGCTAAGCCTAGAAATATTTGAGTTTTCAGGTATTTGATT
TA--------------------------------ACTTGCCTTTGCCATGATGCACTTTTGATCTCAAAATTTTGTAACT
AGGTTGTATAACGCTGCTGCTCATTATTGCAGAAGCAGGAGCAAAGGAGGATCAGCCGCAGCAGGAGTCCTGGGAGATGG
CTGTGTCTAGTAAAGAGACTGCACCAAGAACAAAGCATCGTCGGCTGGAGGCGTAATTGGGCCATTCTTATCCTGCTTTG
AGTTGGCCCAAACAGCACATGGGAAATCGGGCTAGGG-CATTGACTAATGTCTTTTTTTCTAAAAGCCATAAACAAAAAA
A-T--TATAGTACAGAAAAATACAGGGAAACAAAAATTTACAACTTGCCGTGCTCTAACATATAAAAATTTCCATGCTAT
ATTATTTGAAACTGGGAAACAA-TTATGATTTTTTTAAACATGCCACGCGGCAAAATTTACACATTTTTGTTATGTCCAT
ATGGT-AATAAATTTCATGTTTTAAGATGGCAAATTACTTGCTTTTTGGTGCATATGACATGGCAATTTTTGGAAATGTT
TCTAACAGTCAGATGGAAAATTTTACATATGTTGTTTTTAAT-ATTTTTTCTACACATGGCAAATTTAGAATTTTTCTTT
TGGTCACA------------------------------------------------------------------------
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>chr4A_2297
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---TCACAAGGAAAGTTAATGGCAAATTTAGTTCTTGTAATTTTCCTATGGCAAGCTTGAGTTCTTTTTCTCTTGGAACC
ATTGGA-------AAAATGTTTCTACTTTGTCACATGGCAATTTTACAAGTTTTTTT-CTTTTTGCTAAATTCGTAATGA
AATTGACACGAGGGAATT-CTTTTAAGTAAATTATCAAAAACTAAATTTGCCAAGGCGGTGAAAATAAATTTTCCATGGT
CCACGGAAAAACTAAATTGAAATAAATTTGCCATGTCTATTGAAAATAAATTTGCCATGGTCTGTCAATGCAAACTGCCA
TGATCTAGCAGTGCAATTTTCTTAAAATTTTCATATTTTTTACCATGGATGTAAAACTAGCCATGGTCTAGCAAGGCAAT
TTGCCATGGCCCA-AAAAGTTTGAATTTTACAAAATAATGTAAAACTTTTGATTCTTTATTGGATCATGAAAACCTACTT
TTTGAAGATTAACTAATATAAAGAAAACAAAAAAA--GAATTATTTCCTCTTCTTATATTACTACTTTTCACGTTGTTAT
TTGGATTCATAGGCCATGGTGAAAGAAAAAGTCAATCATG--
>SNPs
S--SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------------------------
-----------------------S---------------------------------S--------------S-------
---SSS-S-SSSS----------------------------------------------S----S-----S---------
---------------SSSSS--SSSSSSSSS-------------------S-----------------------------
-------------S--------S----------------------------S-----------S----------------
-----------S-----S--S---S----------------------------------S--------------------
----S---------------------------------------------------------------------------
------------------------S-----S-------------------------------------------------
---------S----------------------------------------------------------------------
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-----------------------------------------------------------S--------------------
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--------S-------------------------------------S-S-------------------------------
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------------------------------------------------------------------------S-------
--S--S-----S--------SS-----------------------------------------------S----------
-----------------------------------S--------------------------------------------
------------------------SS-S------------------------S-------S-------------------
--------------------------------------------S---------S-S---------SS------------
---SS----------------------------------S----S----S-------S---------S--------S---
-SS----------------S-S-------------------------------------------S---SS--SSSSSSS
SSS-SS------------------------S-----S-----S--------S--------S---------S----S-S--
-----S------S---S--------S--S-S--S--------S-----------------------------------SS
--------------S--------------------------------------------S----------S-SSS-----
--SSS-SSSSSSS-----------------------------------SSS------S--------------S-------
-S--S-------------S---------------S--------S--------------------S-------S-------
---SS--------------S---SSS-S-SS-------------------------------------------S-----
----------S----------S---------S-SS-----------------------S---------------------
------------SS------------S-S-S-SSSS--------------S---------SS------S-----------
--SS-------------S---------S-S---S-SS-------SS-----------------S--------S-----SS
---------------S-------S----------------SS
>forward_176
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----------------------------------------------------------------------------CGCA
TCACGGCAAAGATCTG----------------------------------------------------------------
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>reverse_1409
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------------------------------------------------CGGGTTGAAGAGTGCGAGAT------------
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>forward_193
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-------------CTGCATGATCGGTCCTCCTC-----------------------------------------------
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>reverse_1868
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---------------------------AAACAAAGCATCGTCGGCTG---------------------------------
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>forward_208
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----------------------------TCCTCGATCTGCATGCTTCC--------------------------------
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>reverse_2040
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---------------------------------------GCAACGTGCCATGCTCTATT---------------------
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