>input_sequence_66619
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--------------------------------------------------ATGGACCAGCACAAGGAGCTGGAGGTGGAT
GTGGAGGGAGAGCCGACGGATCAGCGCAAGGAGGAGGAGGT---G------GCCGGCAAGCCTGAAGAATCAGCGGGTCA
GCGCAAGGAGGAGG------------------------------------------AGGAGGAGCGGGAGGAGGGAGACA
GTCTCAGAGAGCCAACGGATCAGAGCAAGGAGGAAGAGAAGGAGGACAAGTCTGAAGAGCTGACGGAACAGCACAAGGCG
GAGGCGGTGGCGGTTGCGGTGGTGGTGGCGGAGGTGGACAAGCCTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCGGG
GGCGGTTGCGGTGGACAAGTCTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCGGG---GGCGGTTGCGGTGGACAAGT
CTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCAGGGGAGGAGAAGGACAAGGAGACGGAGAGGAGCTCCGGCGAGGAG
TCGCCGTCGCTTTTCATGCACCCGTGCTCGCTGCTGCTGCGGTACCTCGGCCGTGCCTACGCGTGGTGCATGGGCCTGGC
CGACTGGTTCGG---CGGCGGCACAAGGCCGAGCGCCGCTCCTGCCGCATCTCTTAACTCGTCACGGGAAGAAGCAGGCG
AGGCGGCGGACATCGGTACCAGGGAGATCTCCAAGACC---ACCTCTGGCAGAGTAAGTAGCTTTCAACTTTG--TGCAA
GCATTTCTCATCTCCGGCCGGGTTATTCTCCATAGTT---GACGAAGCTCTTGGCCACGCACGTACGCGATTTCTGTAGG
GGTTCTACATGCGGGAGGTGATCATGCGCGTGAGGGCGGTGAGGAGGCCGCGGCCGCCCGGCAACCCGAGGGAAGGGCGC
GGCGGCGGTGGAGGAAGCCACAACTAG-----------------------------------------------------
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>chr2B_1_TraesCS2B01G554800
GCGGTGCGTGATGAGGTTAGGGAGGAAGATTCATCTTCGAAGGTGGAAGAATCGTCTTCGAAAGATGAGGACGAAGACGA
GGAAGATGATTGATGTGTCTTTCATTTATGTCTTGAACTTTAGTTTGCATTTAAACTTGGTTGGATGAACTTGTGGGCAT
GATTTTGAACTTGTGGGCATGAACTTTTATTCATCAACTTGTTTGTGTCAGATTTCATATGTTCATTGTATTTTGATGAA
TGTTTCAAACTCATTTTGTGTCCAAAATATCATATATGTTAACGCCCGGCGAGCCGCGCGCTATATTTTTGCGCGCTGCT
GGAGCGGCGCGCGCTGCATTATAGCGCGGCTGCTGGAGCCAGCGCTGGCGGGCGCGCTAAGCAGGCCGAAGTGCGCGCGG
CAAACAGGTTTTTTACGCGCGGCGCTTAGCGCGGCTGTTGGAGATGCTCTTAGCACTGGTGTACATCAACATACTGTACG
TATCGTAGAGTACTGAAGTAGTCCAGTTTGGGCGTGAGATAGATCGTCACGTACTGCTCTGGTTTCAAGAAAATGGCGTT
GCAGAATATATACTACTACTACTACGTGTAAAACTGGTTCAAAGTTCGAACCTTGACTTGACATAAATTAGGTCACACGC
GCGCGCGCGCGCACACGGTGTCGCATTGACATAAATCCAGTCTACGAAACTGGTTCAAACCCTCGAGGGGCATTCCTGGA
AGACAAGATAAATTCCAGCCTCGCCTCACCTCACCTGCTCGAGTTCCATGGCAATAAATAGGGGCCAGCCTGAAATGAAT
CGGCGACAGAGGGGAGTTACTGCCCTCGAACGCATCAACGCCATCCA----------TCCTCAAGGAAAAGATAGATGTG
CAAAGAATAAAGTTCAAGAAAGCGAAACAGTAGACCACACCGCACACAAACACCTCCCAACCCATCGAGAAGCCCCCATC
CCCGTAGAGCGGCGCGCCTAGGAAGAAGCCCAGGAAGAAGCGGAGGAGCAATGGACCAGCACAAGGAGCTGGAGGTGGAT
GTGGAGGGAGAGCCGACGGATCAGCGCAAGGAGGAGGAGGT---G------GCCGGCAAGCCTGAAGAATCAGCGGGTCA
GCGCAAGGAGGAGG------------------------------------------AGGAGGAGCGGGAGGAGGGAGACA
GTCTCAGAGAGCCAACGGATCAGAGCAAGGAGGAAGAGAAGGAGGACAAGTCTGAAGAGCTGACGGAACAGCACAAGGCG
GAGGCGGTGGCGGTTGCGGTGGTGGTGGCGGAGGTGGACAAGCCTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCGGG
GGCGGTTGCGGTGGACAAGTCTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCGGG---GGCGGTTGCGGTGGACAAGT
CTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCAGGGGAGGAGAAGGACAAGGAGACGGAGAGGAGCTCCGGCGAGGAG
TCGCCGTCGCTTTTCATGCACCCGTGCTCGCTGCTGCTGCGGTACCTCGGCCGTGCCTACGCGTGGTGCATGGGCCTGGC
CGACTGGTTCGG---CGGCGGCACAAGGCCGAGCGCCGCTCCTGCCGCATCTCTTAACTCGTCACGGGAAGAAGCAGGCG
AGGCGGCGGACATCGGTACCAGGGAGATCTCCAAGACC---ACCTCTGGCAGAGTAAGTAGCTTTCAACTTTG--TGCAA
GCATTTCTCATCTCCGGCCGGGTTATTCTCCATAGTT---GACGAAGCTCTTGGCCACGCACGTACGCGATTTCTGTAGG
GGTTCTACATGCGGGAGGTGATCATGCGCGTGAGGGCGGTGAGGAGGCCGCGGCCGCCCGGCAACCCGAGGGAAGGGCGC
GGCGGCGGTGGAGGAAGCCACAACTAGCTAGCGTTCAGCCTGGCTAGCCCTACGTACGCCTACCCGGCGGCAATGGAGTG
AGTACGTACGTACGTCGTCTCAATCTTGGCGCGGTACAGTTAGCAGGCTGTCAACTTGTGAAAGCAGGTGACCTTTGGTT
GTTTGTTTGTTTGTGTGTATAGCAAAGTGTCTGGATCTGGATAATTAAGGAATTAAGTACTGACGTTCTTCACGTAGACA
T-GGCTGATCATATCTTGCAATAAGATTAAGA----GAACTAC--TGTGTGTTACTGTGTTAGTACAGCT------GCTG
TCTGTGCTCTGTAAGCTGATTGAAACCTG---AACTTATCTGCTGACATTGGTAGTTAACTGCTACTA-CTTTTTGTCTG
TTGCTCT-AAGTGATGTGC-------TGTCGGTGGTCTCGTGTTTCAGTAAG-AACTGTGTGTTGGTACTGTTCGTTTAT
A--CTGTGTTGGTATGTTTTGTCTGTGTTTTTGCAAGTG-------CAAACCTGAACTTGACTGCTAAAGTTGGCTGTTA
GCTACAGCC-------T-----------TCAGTCTGTTTTTCAGGTGATATGG-TAAAGAGGAAGAGAAAACTATATCAT
CGCCCAGGTGCATTGCGTATTGAGTATTGACAGTATGAGTGTCTGTCCATTTTGTTTCATTTGACTGGAATTGGAGTTAG
TCCTGGTCGACTCGGTTGACTTGCTTGCATGTCGGCCATTCATTTGGAGAGACCGCTAGATCATCCGATTCCAACGGTAT
TA----TAGTAGTAGTAGGAGTTAGGTTCTTGCAAGAGAAATGTTAAGCAAGGTAAC------ATGGAGTACCATCTAAC
TAGAGTAGCTAGTGCGCTACGTGCAGCTTTAGAGCTAGTCCAGATGTAAAGGCATTGCAGTCGGCAGAAGGGTCATCA--
---CTCATCAGGCCAATGCAAAA---AAAGTACTGACCAGTGCATGGGCATGCCCTGATAAAAAAG--GGCAGTGAGATG
ACGAATCTAACCGCCCCGAAAAGAGCACATACTGCTACCCTTTTTTCACTTTTGGAATGGG
>chr2D_651
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----------GCACACGGAGTCGCATTGACATAAATCCAGTCTACGAAACTGGTTCAAACCCTCGAGGGGCATTCCTGGA
AGACAAGATATATCCCA-----GCCTCGCCTCACCTGCTCCAGTTCCATGGCAATAAATAGGGGCCTGTCTGAAATGAAT
CGGCGACAGAGGGGAGTTACTGCCCTCGAACGCATCAACGGCACCCAATCCATCCTCTCCTCAAGGAAAAAGATAGG---
---AGAATAAAGTTCAAGAAAGCGAAACAGTAGACCACACCGCACACAAACACCCCCTCCCCCCTCCAGAAG--------
CCCGTAGAGCGGCGCGCATAGGAAGAAGC------------GGAGGAGCAATGGACCAGCACAAGGAGCTGGAGGTAGAT
GTGGAGGGAGAACCGACGGATCAGCGCAAGGAGGCGGAGGCGGGG------GCGGGCAAGCCTGAAGAACCCGCGGATCA
GCGCAAGGAGGAGGAAGGAGACAACCTCAAAGAGCCAACGGATCAGAGTAAGGAGGAGGAGCGGCGGGAGGAGGGAGACA
ACCTCAAAGAGCCAACGGACCAGCGCAAGGAGGACGAGAAGGAGGACAAGTCTGAAGAGCTGACCGACCAGCGCAAGGCG
GAGGCGGTGGCGGTGGCGGTGGCGGTGGCGGT------------------------------------------------
---------------------------------------------------GGCGGTGGCGGAGGTGGAGGTGGACAAGT
CTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCGGGGGAGGAGAAGGACAAGGAGACGGAGAGGAGCTCCGGCGAGGAG
TCGCCGTCGCTCTTCGTGCACCCGTGCTCGGTGCTGCTGCGGTACCTCGTCCGTGCCTACGCGTGGTGCATGGGTATGGC
CGACTGGTTCGGCGGCGGCGGCACAAGGCCGAGCGCCGCTCCTGCCGCGTCTCTTAACTCGTCACGGGAAGAAGCAGGCG
AGGCGGCGGACATCGGGACCAGGGAGATCTCCAAGACC---ACCACTGGCAGAGTAAGTAGTTTTCATGTTTTTTGGTAA
GCATTTCTCATTTCTGGA----TCATTCCTAA---TTGACGAAGACGCTCTTGGCCACGCACGTACGCGATTTGTGTAGG
GGTTCTACATGCGGGAGGTGATCATGCGCGTGAGGGCGGTGAGGAGGCCGCGGCCGCCGACCACTCCGAGGGAAGGGCGC
GGCGGCGGTGGAGGAAGCCACAACTAGCTAGCGTTCAGGCTTGCTAGCCCTACGTACGCCTACGCGGTGGCAACG----G
AGTACGTACGTACGTCGTCTCAATCTTGGCGCGGTACAGTTAGCGGGCTGTCAACTTCTGAAAGCAGGTGACCTTTGG--
--TTGTTTGTTTGTGTGTATAGCAAAGTGTCTGGAT------AATTAAGAAATTAAGTGTTGACGTTCTTCGCGGAGGCT
T-GACTGATCACATCTTGCAATAAGATTAAGATTAAGAACTACTGTGTGTGTTACAGTGTTAGTACAGCTCTTGCTGCAG
TCTGTGTTCTGTAAGCTGATTGATACCCGTTCAACTTATCTGCTAACTTTGGTAGTTAACTGCTACAGCCATTTGTCCGT
TTTACTACAAGTGATGTGT-------TGTCGGTGGTCTCGTCTTTCACTAAG-AACTCTGTGTTTGTACTGTTCTTCTAC
A--C--TGTTGGTATGTTTTGTCTCTGTTTTTGTAAATG-------CAAACCTGAACTTGACTGCTTAAGTTGGCTGTTA
GCTACAGTGTACAGTAT-----------TCAGCCTGCTTCTCTGGTGATATGG-AAAAGAGGAAGAGAAAACTATATCAT
CGCTCAGGTGCATTGCGTATGAGTA--TGACAGTATGAGTATCTGGCCACTTTGTTTTATTTGACTGGAATTGGAGTTAA
TCCTGGT---------TGACCTGCTTGTATGTCGGCCATT----TGGAGAGACCGCTAGATCACCCGGTTCTAACGGAAT
CA----TAGCAGGAA-------TAGGTTATTGCGAGAGAAATCTTAAGCAGC--AAC------ATGGAGTACCATCTAAC
TAGAGTAGCTAGTGCGCTACGTGCAGCTTTAGAGCCAGCCCAGATGTAAAGGCATTGCAGTCGGCAGCAGGGTCATCAGA
TCACTCATCAGGCAGCCGGCCGCAACAAAGTACTGACCAGTGCATGG-CATGCCCTGAT-AAAAAAAAGGCAATGAGACG
AC-----------------------------------------------------------
>chr2A_651
GCACACGGT-----------------------------------------------------------------------
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----------------GGAGTCGCATTGACATAAATCCAGTCTACGAAACTGGTTCAAACCCTCGGGGGGCATTCCTGGA
AGACAAGATAAATCCCAGCCTCGCCTCGCCTCACCTGCTCGAGTTCCATGGCAATAAATAGGGGCCTGTCTGAAATGAAT
CGGCGACAGAGGGGAGTTACTGCCCTCGAACGCATCGACGGCACCCAATCCATCCTCTCCTCAAGGAAAAAGATTGG---
---AGAATAAAGTTGAAGAAAGCGAAACAGTAGACCACACCGCACACAAACACCTCCCAACCCATCCAGAAGCCCCCAAC
CCCGTTGAGCGGCGCGCCTGGGAAGAAGCGG-------AGCGGAGGAGCAATGGACCAGCACCAGGAGCTGGAGGTGGAT
GTGGAGGGAGAGCCAACGGATCAGCGCAAGGAGGAGGAGGCGGACGCGGACGCGGGCAAGCCTGAAGAGCCGACGGATCA
GCGCAAGGAGGAGG---------------------------------------------AGGAGCGGGAGGAGGGAGACA
ACCTCAAAGAGCCAACGGATCAGCGC------------AAGGAGGACAAGCCTGACGGGCTGACGGAGCAGCACAAGGCG
GAGGCGGTGGCGGTTGCGGTGGTGGTGGCGGAGGTGGACAAG--------------------------------------
-------------------TCTGAAGAGCTGACGGACCAGCGCAAGGCGGGGGCGGTGGTGGAGGTGGAGGTGGACAAGT
TTGAAGAGCTCACCGACCAGCGCAAGGAGGAGGCGGCGGAGGACAAGGACAAGGAGACGGAGAGGAGCTCCAGCGAAGAG
TCGCCGTCGCTCTTCGTGCACCCGTGCTCGCTGCTGCTGCGGTACCTCGTCCGTGCCTACGCCTGGTGCATGGGCATGGC
CGACTGGTTCGGCGGCGGCGGCACAAGGCCGAGCGCCGCTCCTGCCGCGTCCCTTAACTCGTCACGGGAAGAAGCAGGCG
AGGCGGCGGGCGTCAGGACCAGGGAGATCTCCAGCTCCAAGACCACTGACAGAGTAAGTAGTTTCCAAGTTTTTTTGCAA
GCATTTCTCATTTCCGGA----TTATTCTCCATAGTTGACGACGAAGCTCTTGGCCACGCACGTACGCGATTTCTGCAGG
GGTTCTACGTGCGGGAGATGATCGTGAGCATGTGGGCGGTGAGGAGGCCGCGGCCGCCCGGCAACCCGAGGGAAGGGCGC
GGCGGCGGTGGAGGAAGCCACAACTAGC----GTTCAGCCTTGCTAGCACTACGTACGCATCTGCGGCAGCAATGGAGCA
CGTACGTACGTACGTCGTCTCAATCTC---------------GCAGGCTGTCAACTTGGGAAAGCAGGTGACCTTTGG--
--TTGTTTGTTTGTGTGTATAGCAAAGTGTCTGGAT------AATCAAGAGATTAAGTGCTGACGTTCTTCACGTAGACT
TTGACTGATCACATCTTGCCATAAGATTAAGAGTAAGAACTAC--TGTGTGTTACTGTGTTAGCACAGCTCTTGCTGCAG
TCTGTGTTCTGTAAGCTGATTGAAACCTGCTCAACTTATCTGCTGACGTTGGTAGTTAACTGCTACAGCCTTTTTGTCTG
TTGCTCG--AGTGATGTGCTGTCCCGTGTCGGTGGTCTCGTATTTCAGTAAGAAACTCTGTGTTGGTACTGTTCTTCTAT
ACTC--TGTTGGTATGTTTTGCCTGTGTTTTTGCAAGTGCAAAGTGCAAACCTGAACTTGACTGCTAAAGTTGGCTGTTA
GCTACACCC-------TACAGTAGTCAGTCGGTCTGTTTCTCAGGTGGTATGGAAAAAGAGGAAGAGAAAACTATATCAT
CGCTG-GGTGCATTGC----------------GTATGAGTGTCTGTTCATTTTGTTTTATTTGACT--------------
-CCTGGT---------CGACTTGTTTGCATGCCGGCCATT----TGAGGAGACCGCTAGATCATCCGATTCCAACGGAAA
TCATACTAGTAGGAG-------TAGGTTATTGCAAGAGAAATCTTAAGCAAGGTAGTAACATGATGGAGTACCATCTAAC
TAGAGTAGCTAGTGCGCTACGTGCAGCTTTAGAGCCAGCCCAGATGTAAAGGCATTGCAGTCG---GCAGGGTCATCAGA
TCACTCATCAGGCAGCCGTAACAAAGT--GTACTGACCAGTGCATGGGCATGCCCTGATAAAAAAAAAGGCAATGAGACG
ACGAATCTAACCGCCCCGAAAAGAGAACATACCGCTAGACTTTTTTACCTTTGG-------
>SNPs
--SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------S-------------------------------------------------------------
-------------S-------------S--------------------------------------S-S-----------
----------------------------------------S--S--------------------------SSSSSSSSSS
SSS---------------------------------------------------------------S-----------S-
-----------------------------SSSSSSSSS------------------------------------------
----------------------------------------S------------S---------------S-S----S---
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SS----S----------------S----------S--------------------------------S------------
------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS-----------S--S-------------S--S-----S-----S---S-S-----------
----------------------------------S---------------------------------------------
-----------S---S---------------------------------S-------------------------S----
------------------------------------------------S-------------------------------
----------------S---------------------------S----------------S------S---S-------
-----------S-----SSSSS----------------------------------------------------------
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-----------------------------------------S---------------------S--------------S-
------------------------------------------------------------------------------SS
SS----------------------------------SSSSSS-------S--------S--------------------S
---S-------S------------------------------------------------------------------S-
------S----------------------------------------S------------------SS------------
------S----------------------------------S---------------S----------------S-S---
----SS--------------------------------------------------------------------------
---------------------------------------S--------------S-------------------------
---S----------------SSSSSSS------------------------------S---------------------S
-------SSSSSSSSS------------------------SSSS---------------------------------S--
------------S--SSSSSSS------S-------------S-------------------------------------
-----------------------------------S--S----------------------------S------------
-------------SSSS-S--S-------------------------------------------S------S-----S-
-------------------------S------S----SS-------SS----S-SSSSSSS
>forward_544
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--------------------------------------------CGTCACGTACTGCTCTGGTT----------------
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>reverse_2649
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--------GACTCGGTTGACTTGCTTGC----------------------------------------------------
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