>input_sequence_66577
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---------------------------------------------ATGGAGGCCAGCCATGCCCACTCGCCAACCCTTTC
CTCGTCCGAAACCATAATGGCCGCCCTCCTCTCATCAGTTCCCGCCGTGCGGCTCCCTTCGCTCGTCCGGGCGCTTGCCG
CGGACGCGCGCCGGCAGCGCGCCCGCCTCGCGTTCCTCCTCCTCTCCCCGCCGCATTTCGCCCGCGCCCTCGCGCGGCTC
CGCTCCATGCCTCTCCCAGCCAAGGCCGCGCTGCTCGGCCGCGTGCTCCTTCGCTCATTCCTCATGCTGCTCCCGGCGCT
CTCCCCCGACGGCTCCCACCACCTTCTACGCCTCCCGACGCCCGACCTCGACGCCGCGCTCCTGCTCGTGGCCATGTGCG
ACTCCTACTCACCGGCCGCCTCCTCCGCGTCACCCGTGGACTGGCACGCGCTGCTCGTCGACGACGTGGTGCGCAACGCG
CTCTCCATCTCCGGCCTCGGCGGCACGCCCTGGGCCACCGTCGCGCCCTACCTTGACGCGGCCGCCAAGTGCCGCCGGTT
CGCGGACGTCGTGTCGGAGGACCGCGCCGTGGCCGGCATCGGCGGCGATGGTAACAAAAACAGCGTGGGGCGCGGAGGTG
CGTCGCACGCGACGGTGCTGGCGCTGCCGACCGCGCCCGGGGACGGGACCCCGTGCGCGATCTGCAGGGAGGAGATGGCG
CCCGGGCGCGGCGGGGTGTGCGTGCTGCGGCCGTGCGGGCACCGGTTCCACTGGCCGTGCGCGCTGCGGTGGCTGGCGCG
CCGCAACACCTGCCCGTGCTGCCGCGCCGAGCTGCCCGCGGAGGACGCGCTCGCCGAGACCCGGCGCCTGTGGCGCGCGG
TCGAGAGGATGGCGGGAGACAGCGGCGGCTGTGCGTGA------------------------------------------
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>chr1B_1_TraesCS1B01G266300
AATGGAAGAGCCACCATGCCAAAGGATAACCATCAAGTCAAGGGAAATAAGTGGGAGAAGGTAAGGGCCTCTCGTGACGC
AGCGGCTAC-AAAAT-GTCGTCCATATGGACGGGCA-TTTTT-CGGCAAGGTAGAACAAGAAAGAGGAGAGGTACAAGCT
CATGTTTGATGCGCAAAAGAAGAGGATGGGCTGGGACCGGAAGAGGGCGAAGAAGATGTTGAAAATTGAGAAGGAGAAGA
TCGAGTTGGAGAAGCAAGAGGCGTTGATCAAATATGAACTCGAGAAGGCCAAGACATTTGGAGAGATTGAGGTTGAGAAG
GAAAGGTTGCAACTC-GCACGGGATGCAGGGGATGTGAAGACCATGTTAGTGGACGAAACCCTTTTGGATGAGT--ATGC
AAAGAAGTGG-CTTGGGG---ATAATAAGGAGATAAACGAGCGTAGGGAGTATGAGGCGGTGAGAGCGGCGGCGGCAACA
---GAGCATGCGGC-AAGGATGCTTGTGGAGTA-GGCAGTCTGGATGCATGCGGAGCAAGATGCTA---GCATGGCCTTG
GAGCAGGCGGCATTGGTGGTGTCTGACAAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------AAGCAGGC----CATCCGTCATGCTCG
GACATGAATATAATTTTGACATGTAT----------CT-T---TTGTTGAACTATGATTG--TTTCATTTGTTTCGAATT
ATTAAATACGGATAATTTGTATCGTATGATTGTCGTGTACGAATTGCATGAATTTGAAGATC-GCATTTGTGGTATATGA
ATTTGTGGGAATACGAGGGGTGAGCGGTTACTGTCCACAAACGCCCCCTGACAAGTCCTCTCA-----------------
------------GGATCCACGATTTTGACTGTGCCTAGAGAACT--GGATCGATGTAAGGCCACACGTGTTACAGTCCAG
GTTTACACAAGTTCCCATAGACGCGCTGCACTGCCCTCCAAAACTTTCAAGTGTGTATAAGTGCCCTACAAAAAGAGATT
TCCCACCATCTCACTCCACTCTCTCGAAAGCTGCCCGCGATCCCGATGGAGGCCAGCCATGCCCACTCGCCAACCCTTTC
CTCGTCCGAAACCATAATGGCCGCCCTCCTCTCATCAGTTCCCGCCGTGCGGCTCCCTTCGCTCGTCCGGGCGCTTGCCG
CGGACGCGCGCCGGCAGCGCGCCCGCCTCGCGTTCCTCCTCCTCTCCCCGCCGCATTTCGCCCGCGCCCTCGCGCGGCTC
CGCTCCATGCCTCTCCCAGCCAAGGCCGCGCTGCTCGGCCGCGTGCTCCTTCGCTCATTCCTCATGCTGCTCCCGGCGCT
CTCCCCCGACGGCTCCCACCACCTTCTACGCCTCCCGACGCCCGACCTCGACGCCGCGCTCCTGCTCGTGGCCATGTGCG
ACTCCTACTCACCGGCCGCCTCCTCCGCGTCACCCGTGGACTGGCACGCGCTGCTCGTCGACGACGTGGTGCGCAACGCG
CTCTCCATCTCCGGCCTCGGCGGCACGCCCTGGGCCACCGTCGCGCCCTACCTTGACGCGGCCGCCAAGTGCCGCCGGTT
CGCGGACGTCGTGTCGGAGGACCGCGCCGTGGCCGGCATCGGCGGCGATGGTAACAAAAACAGCGTGGGGCGCGGAGGTG
CGTCGCACGCGACGGTGCTGGCGCTGCCGACCGCGCCCGGGGACGGGACCCCGTGCGCGATCTGCAGGGAGGAGATGGCG
CCCGGGCGCGGCGGGGTGTGCGTGCTGCGGCCGTGCGGGCACCGGTTCCACTGGCCGTGCGCGCTGCGGTGGCTGGCGCG
CCGCAACACCTGCCCGTGCTGCCGCGCCGAGCTGCCCGCGGAGGACGCGCTCGCCGAGACCCGGCGCCTGTGGCGCGCGG
TCGAGAGGATGGCGGGAGACAGCGGCGGCTGTGCGTGACAGCGCCGGCTGGATCAGAGCGCGGGTGGCA--TACGGGACG
TGCGTTTGGACGTGCTCGTGTGTCCCGGTCT-------CCAGTTGCAAGTACTGGTGTCAGATTCGTGTGGATGGCGACG
GC-TTTGGTGGGCCCGCGTGCCGAATAATGGTAGTATAGGATTACTGTTAGGTACATAAACAAATG-AATGAGATCGAAT
GTATACTCGTAATTAAGGCTCATCATGCCGTATCATCACAATGCAAATTGTGGGTTTAGTTTTGCAGTTTGTGTTAGCTT
TGGTGGATCCGAAGCAGGTTTCGCGGGAGAAGATAGGTATCGTCGTTTTGCAGCCCAATTGCTGCTTTTTAGGCTTCCTG
GTGATGATGTTGGCGCCTCGAACAACATGCATCACGGAT------------------------------GTGTGGATTAT
TGTAAAGATCGTAGTAGTACGCTTACTTT---------------------------------------------------
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---GCTGGAGTAACTGTTGCTGATAT--GGAAGCCA---------------AATGGTGGTGGATCCAGAAGACAACCCTG
GCATTGACAAATGGTGGTAGTCTTGCT------GTAAAATAGGTGACTGAAAAGTTCGACGGGTTATATTTTTCAGCCTG
ATTTGACGACCGAACCGAAAGTGGTTGCTATGATGGTATCTATCGAACACGCAGTAAGTCTAAGATCGCACCTGATACCC
CACCATGGTAACATGTACTGTAGTACATTTCCGAAGGTGGATGCGCATATATATGG--CATACACCAATTGCTCGATCTG
CTACAATATCATCGGGTTAGGCCAACTCCACCGCGCTACCCCAAAAACGACACAAATTTGGCCCTGGAATGGGTCAAAAG
TGGACACAAAACGGATAAAAGTCCGTTTGCTCTCGTGTATTGGGCCGCGCGCGGACAGGATAGTGCCGCGCGGTGGAGTT
GGCCTTATTCTTAGATGAGATGGCCATGTCGAACTGTCCACCTCATCATGTAGCAAGGCGGGCGGATGGGCATGTCGAAA
CAGCAAGCAGGGCAGACGGACGCGCGCGGACGCATCTT
>chr4D_1
AATGGAAGAGCCACCGTGCCAAAGGATAACCGGCAAGTCATGGGAAACAAGTGGGAGAAGGCAAGGGCCTCCCGTGACAC
CGCGGCTACAAAAAT-GTCCTCCACATGGACAGGCACTTTTT-CGGTGAGGGAGAACAAGAAAGAGGAGAGGTACAAGCT
CATGTTGGATGCGTAAAAGGAGAGGATGGATTGGGAGCGAAAGAGGGCGGAGAAGAAGTTAGAAATTGAGAGGGATAAGA
TCGAGTTGGAGAAGCAAGAGGCGGCGATCAAAAGGGAGCTCGAGAAGGCCAAGACATTTGGAGAGATTGAGCTTAAGAAG
GAGAGGTTGTAAGTC-ACACGAGACGCGGAGGATGCGAAGATCATGTTGGCGGGCGAAACCCTCTTGGATGAGC--ATGC
AAAGAAGTGG-CTTGCGGCGAATAAGAAGGAGATCAACGAGCGTAGGGAGTACGAGACGGCGACGGCGGCTGCGGTAGCA
GCGAAGCATGTGGC-AAAGATGCAGGTGGAGCA-TGTGGCCCAGATGCATGCGGAGCAGGAAGCAA---GGATGGCCTCG
GAGCAGGCGACATGGATGG-GTCCGGCCAGTGATCCAAC-----------------------------------------
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-----------------------------------------------------CAGCAAGCGAGGTATCCCTCATGCTCA
GACATTAATTTCATTTTGGCATGTCT----------GC-A---TTGTTGAACTATGATTTGCATTGCTTTGTTTCGAACT
GTTGAATTCACACAGTTTGTAGTGTATGATGGACGTGCATGGATTGCATACATTTGA-----------------------
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>chr4D_1
AATGGAAGAGCCACCGTGCCAAAGGATAACCGCCAAGTCATGGGAAACAAGTGAGAGAAGGCAAGGGCCTCCTGTGATGC
CGCGGCTACAAAAAT-ATCCTCCACATGGACGGGCCTTTTTT-CGGCACGGGGGAACAAAAAAGAGGAGAGGTACAAGCT
CATGTTGGATGCGCGAAAGGAGAGGATGGATTGGGACCGGAAGAGGGAGGAGAAGAAGCTGCAAATTGAGAGGGAGAAGA
TCGAGTTGGAGAAGCAAGAGTCGGCGATCAAATGGGAGCTCGAGAAGGCCAAGACATTTGGAGAGATTGAGCTTGAGAAG
GAGAGGTTGCAACTC-GCACGAGACGCAGAGGATGCCAAGATCATGTTGGCGGACG-AACCCTCTTGGATGGCC--ATGC
AAAGAAGTGG-CTTGTGGCGAAGAAGAAGGAGATCAACGAGCGTAGGAAGTACGAGGGGGCGAGGGCGGCTGCGCCAACA
ACGGACCATGCGACCAAAGATGCAAGAGGAGCA-TGCGGCCGGGATGCAGGTGGAGCAGGACTCAA---GGATGGACTCG
GAGCAGGCGGCACGGATGGCGTCCGGCCAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------CAACCAGCGAGGCTTCGGTCACGCTCG
GACATTTATTTCATTTTGCTATGTCC----------GG-A---TTGTTGAACTA--------------------------
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>chr3A_1
AATGGAAGAGCCACCGTGCCAAAGGATAACCGC-AAGTCATAGGAAACAAGTGAGTGAAGGCAAGGGCCTCCCGTGATGC
CGCGGCTATAAAAAT-GTCCTCCACATGGACAGGCATTTTTT-CGGCGAGGGAGAACAAGAAGGAGGAGAGCTACAAGCT
CATGTTGTATGCGCAAAAGGAGAGGATGGATTGGGACCGGAAGAGGGCGTAGAAGAAGCTGGAATTTGAGAGGGAGAA-A
TCAAGTTGGAGAAGCAAGAGGCAGCGATCAAATGGGAGCTCGAGAAGGCCAAGACATTTGGAGAGATTGAGCTTGAGGAG
AG---GTTGCAACTC-GCACGGGACACGGAGGATGCGAAGATCATGTTGGCGGACGAAACCCTCTTGAATGAGC--ATGC
AAAGAAGTGG-CTTGCGGAGAAGAATAAGGAGATCAACGAGTGTAGGGAATACGAGGCGGCGAGAGCGGCTGCAGTAGCA
GCGGAGCATGCGAC-AAGGATGCAGGTAGAGCA-TGCATCCCGAATGTAGGCAGAGCTGGACGCAA---GCATGGCCTCA
GAGCAGGAGGCATGGATGGCGTCCGACGAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------CAGCAAGCGAGGCATCTGTGACGCTCG
TACATGGATTTCATTTTGGTATGTCT----------GA-A---TTGTTGAACTATGGTTTGCTTTTCTTTGTTTTGAACT
ATTGAATTCGGACAATTTGTATCGTATGATCAAAGTGCATGGATTGCATGGATTTGAGGTTCCGCATTTGAGATATGTGG
ATGTGCGG------------------------------------------------------------------------
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>chr3A_1
AATGGAAGAGCCACCGTGCCAAAGGATAACTAGCAAGTCGTGGGAAGCAAGTGGGAGAAGGAAAGGGCCTCCCGTGAGGC
CGCGGCTACAAAAAT-GTCCTCCACATGGATGGGCA-TTTTTTCAGCAAAAGGGAACAAGAAAGAGGAGAGGTATAAGCT
CATGTTGGATGCGCAAAAGGAGATGATGGATTGGGACCGAAAGAGGGCAGAGACGAAGCTGAAAATTGAGAGGGAGAAGA
TCGAGTTGGAGAAGCAAGAGGCA-TGATCAAATGGGAGCTTGACAAGGTCAATACATTTGGAGTGATCGAGATTGAAAAG
GAGAGGTTACAACTT-GCACAGGATACAGAGGAGGCAAAGATCATGTTGGTAGACGAAACCCTCTTGGATGAGC--ATGC
AAAGAAGTGG-CTTGTGGAGAAGAA---GGAGATCAACAACCATAGGGGGTATGAGACGGCGAGGGCGGCTACTGCAGTG
GCGGAGCATGTGGC-AAGGTTGCAGGCAGAACA-TGCGTCCTGGATACACGCGGAGCAGGACACAA---GGATGGCCTTG
GAGCAGACGTCATGGATGGCGTCCGACGAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------CAGCCAGCGAGTGATCCGTCATGCTCG
GACATTGGTTTCATTTTGGCATGTCCTCGGATGTCCGA-A---TTGTTGAACTATGATTTGTTTTGCTTTGTTTTGAACC
ATTGAATTGTGACAATTTGTATTGCATGAT--------------------------------------------------
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>chr5B_1
AATGGAAGAGCCACCGTGCCAAAGGATAACCGACAAGTCATGGGAAATAAGTGGCAGAAGGCACGGGCCTCCCATGACGC
CGCGGCTACAAAAAT-GTCGTCCACATGGACGGGCA-TTTTT-CGATAAGGGAGAATAAGAAAGAGGAGAGGTACAAGGT
CATGTTGGATGCACAAAAGGAGAGGATGGAGTGGGATCGAAAGAGGGCGAAGAAGAAGCTAGAAATTGAGAGGGAAAA-G
TCGAGTTGGAGAAGTAAGTGGCGGTGATCAAATGGGAACTCGAGAAGGCCAAGACATTTGGAGAGATTGAGCCTCAGAAG
GAGAGGTTGCAACTC-GCACGGAACGCGGAAGATGCG-AGATCATGTTGGCGGACGAAACCCTCTTGGATGAGC--ATGC
AAAGAAGTGA-CTTGCAGACAAGAA---AGAGATCAACGATCGTATGGAGTACAAGGCGGCGAGGGCGGCGGCGACAGC-
--GAATCATGCGGT-CAGGATGCAGGCGGATGA-GGCAGCCCAGATGCTGGACGAGCATGACGCAGTCCGCCTGGGCTCG
GAGCAGGCGCCATGGATGGCGCCCGGCCATTGATT---------------------------------------------
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-----------------------------------------------------CGACAAGCGCGCCATCCGTCACGCTCA
GACATTGATTTCATTCTGTCATGTCC----------AA-T---TTGTTGAACTATGATATACTTTGCTTTGTTTTAAACT
GTTGAATTCAAACAATTTGTATCGTATGATCGACGTGCATGGATTGCATGGATTTGAAGATCGGTATTTGAGGTA-----
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>chr5A_1
AATGGAAGACCCACCGTGCCAAAGGATAACCGCCGAGTCATGGGAAACAAGTGGGAGAAGGCAAGGGCCTCCCGTGACGC
CATGGCTACAAAAATTGTCCTCCGCTTGGACGGGC-CTTTTT-CGGCGAGGGAGAACAAGAAAGAGGAGAGGTACAA-CT
CATGTTGGATTCACAAAAGAAGATGATGGATTGAGACCGGAAGAGGGAGGAGAAGAAGCTGCAAATTGAGAGGGGGAAGA
TCGAGTTGGAGAAGTAAGAGCCGACGATCAAATGGGAGCTCAAGAAGGCCAAGACATTTGGAGAGATTGAGGTTGAGAAG
AGGAGGTTCCAACTCAGCACGAGACACGGAGGATGCCAAGATCATGCCGGCGGATGAAACCCTCTTGGATGACC--GTGC
AAAGAAGTGGGCTTGCGGCGAAGAAGAAGGAGA-CAACAGGGGTAGGAAATACGAGGCGACGAGGGCGGTTGCGGCAGCA
GCGGACCATGCGAC-AAAGATGCAAGCAGAGCA-TGCGGCCCAGATGCAGGCAGAGCAGGATGCAA---GGATGGACTCG
GAGCAGGCCGCATGGATGGCGTCCGACCAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------CAGCCAACGAGGCATCCGTCACGCTCA
GACATTTATTTCATTTTGGCATGTCC----------GGTT---TTGTTGAACTATGATTTTCTTTGCTT-GTTTTGAACA
ATTGAATTCGGACAATTTGTCTCGTATGATCGATGTGCATGGATTACATGGATTTGAGGCTTCACATTTGAGACATATGA
AT------------------------------------------------------------------------------
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>chr4B_1
AATAGAAGATCCACCGTACCAAAGGATAACCGACAAGTCATGCTAAAGAAGTGGGAGAAG-TCAGGGCCTCCCATGACGC
CACAGCTACAAAAAT-GTCCTCCACGTGGACGGGCA-TTTTTTCAGCGAGGGATAACGAGAAAGAGGGGAGGTACAAGCT
CATGTTGGATGCGAAAA-GGAGAGGATGGA-TGGTACCGGAAGAGGATGAAGAAGAAGCTGGAAATTGAGAGGGAGAAGA
TCGAGTTGGAGAAGCAAGAGGCGGCGATCAAATGGGAGCTCAAGAAGGCCAAGACATTTGGAGAGATTGAGGTTGATAAG
AAGAGGTTGCAACTC-GCATGGGACATGGAGGATGCGAAGATCATGCTGGCGAACAAAACCCTTTTGAATGAAC--ATGC
AAAGAAGTGG-CTTGTGGAGAAAAAGAAGGAGATGAACAACCGTAGGGAGTACGAGGTGCCGAT-GCAGCTGCAGTAGCA
GCGAAGCATGTGGC-AAGGATGCTGGCGGAGCA-TGCCGCCCGGATGCAAGCAGAGCAGGATGCAT---GGATGGCCTCG
GAGGAGGCGACATTAATGGCGTCCGGCGAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------CAGCCAGTCAGGCATCCGTCATGCTCA
GACATTGGTTTCATTTTGGCATGTTC----------GG-ATTGTTGTTAAATTATGATTTACTTTGCTTTGCTACAAACT
GTTGAATTCAGACAATTTGTATCATATGATCGACATACATAGATTGCATGGATTTGATGCTCTGCAGTTG----------
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>chr1A_21
--------------------AAAGGATAACCATCAAGTCATGGGAAAGAAGTGGGAGAAGGTAAGGGACTCTGGTGACGC
CGCGGCTACAAAAAT-GTCGTCCACATGGGCGGGCGTTTTTT-CGGCAAGGTAGAACAAGAAAGAGGAGAGGTACAAACT
CATGTTGGATGCGCAAAAGAAAAAGATGGATTGAGACCGGAAGAGGACAGAAAAGAAGCTGGATATTGAGAGGGAGAAGA
TCGAGTTGGAGAAGCAAGAGGCCGCGATCAAATAGGAACTCGAGAAGGACAATACATTTGGATAGATTGAGCTTGAGCAG
GAAAGGTTGCAATTC-GCATGGGATGCGAAGGATGCGAAGATCATGTTGACGGACGAAACCCTTTTGGATGAGCATATGC
AAAGAAGTGG-CTTATGGATAAGAAGAAGGAGATCAACGAGCGTAGGGAGTACGAT-CGGTGAGGGCGGCTGTGGCAGTG
GCGAAGCATGCAGC-AAGGATGCATGCCGAGCGGGACAACCCAGATGCAGGCGGAGCAGGATGCTA---GCATGGCCTTG
GAGCAGGCGGCATGGGTGGCGTCCGACAAGCACGGACGGAGCTACGATTGAGCCACGCCCCAGGCCCCAGGCCTGCTACA
GTACGCAACGGTGTTGCTACACGGCCCAAAATGCCATAGTAACTGAAGTATGTATTTTGCACGCCCCAGGCCCAGGGCCA
GGCCCCCTGATCTGGGTCCTAGATCCGCCACTACCAACAAGTGATACGGCATACGGCAAGCGAGTCATCTGTTACGCTTG
GACATGGATTTCAATTTGGCATGTCC----------CT-T---TTGTTAAACTATTATTTGTTTTTCTTTGTTTCGAACA
ATACGGACAATT---TTTACATTGTATGATCGACGTGTATGAATCGTATGGATTTAAATATCCACATTTAGGGCACGTGG
ATGTGCGGCAATATGAGGAACTGGTTACGATGTCTATGAACACGCCCGCAGGTGTATAGAGAGTGGATTTGCCATGTCCG
GAAATGACGTGTGGATCCACGATTTCGACTGTGCCC------CT--GTATCAATGTAAGGCCACACGTGTTACAGTCCAG
ATTTACACAAGTTCCCATAGACACGCTGCATTGCCCTCCAAAACTTTGAAGTGTGTATAAATGTCCTGCAAAAAGAGATT
TCCCACCATCTCACTCCGCTCTCTCCAAAGCTGCCCGCGATCCCGATGGAGGCCAGCCATGCCCACTCGCCGACCCTTTC
CTCGTCCGAAACCATAATGGCCGCCCTCCTCTCATCCGTTCCCGCCGTGCGGCTCCCTTCGCTGGTCCGGGCGCTTGGCG
CGGACGCGCGCCGGCAGCGCGGCCGCCTCGCGTTCCTCCTCCTCTCCCCGCCGCATTTCGCCCGCGCCCTCGCGCGGCTC
CGCTCCATGCCTCTCCCAGCCAAGGCCGCGCTGCTCGGCCGCGTGCTCCTCCGCTCCCTCCTCATGCTGCTCCCGGCGCT
CTCCCCCGACGGCTCCCACCACCTCCTCCGCCTCCCGACGCCCGACCTCGACGCCGCGCTCCTGCTCGTGGCCATGTGCG
ACTCCTACTCCCCGGCCGCCTCCTCCGCGTCACCCGTGGACTGGCACGCGCTGCTCGTCGACGACGTGGTGCGCAACGCG
CTCTCCATCTCCGGCCTCGGCGGCACGCCCTGGGCCACCGTCGCGCCGTACCTCGACGCGGCCGCCAAGTGCCGCCGGTT
CGCGGACGTCGTCTCGGAGGACCGCGCCGTTGCCGGCGTCGGTGGCGATGGTAACAAAAACAGCGTGGGGCGCGGAGGTG
CGTCGCACGCGACAGTGCTGGCGCTGCCGACCGCGCCCGGGGACGGGACCCCGTGCGCGATCTGCAGGGAGGAGATGGCG
CCCGGGCGCGGCGGGGTGTGCGTGCTGCGGCCGTGCGGGCACCGGTTCCACTGGCCGTGCGCGCTGCGGTGGCTGGCGCG
CCGCAACACCTGCCCGTGCTGCCGCGCCGAGCTGCCCGCGGAGGACGCGCTCGCCGAGACCCGGCGCCTGTGGCGCGCGG
TCGAGAGGATGGCGGGAGACAGCGGCGGCTGTGCGTGACAGCGCCGGCTGGATCAGAGCGCGCGGCCCGCGTACGGGACG
TGCGTTTGGACGTGCTCGCCTGTCCCGGTCTCCACTCTCCAGTTGCAAGTACTGGTGTCAGATTCGTGTGGATGGCGATG
GC-TTTGGTGGGCCCGCGTGCCGAATAATGGTGC---AGGATTACTGTTAGGTACATAAACAAATGGAATGGGATCGAAT
GTATACTCGTAATTAGGGCTCATCATGACGTATCATCACAATGCAAAATGTGGGTTTAGTTTTG-------TGTTAGCTT
TGGTGGATCCGAAGCAGGGTTCGGGGGAGAAGGTAGGTATCGTCGTTTTGCAGCCTAGTTGCTGCTTTTTAGGCTTCTTG
GTGATGATGTTGGCGCCTCCAACAACATGCATCATGTACGTGTGGATATTTCTAAAAAAAAAAATGTACGTGTGAATTAT
TGTAAGATC----GTACTACTGCGGTCACTTCGCGGGAGTAATTTTTTTTAAACATCCTATCTATTCATTTCCAATCACG
GTAGTATAACGAACATCAAAAATAATAAAAAAATTATATTCAGATTCATAGACCATCTAGCGACGACTACACGCCGGAGG
CATGCCGCCATCATCGTCCCTCCCTCACCGGAGCCGAGCAAACTTGTTGTAGTAGACAGTCGGAAAGTCGTCATGCTAAA
ACCCCGTGGGACCAGTGCACCAGAACGACAACCGCCATCGATGAAGAGTAGCTTAGATTGGAAGGATACAACCAGAAGAC
ACACGAACGTAGACGAACGACAAAAAGATCCGAGCAAATCTACCGAAAAACAGATCCGCCAGGGACACACCTTCACATGC
CCGTCGATGATGTTAGATGCACCACCGGAACAGGACCTATGCGAGGAGAACCTTATTCCATTTCAGGGAGCCGCCGCAGC
CGCCTCGCCTTTCTGATCAGAACACAAATCCTAACAAAACTCAAAAACACATCTAAAAACAGGGTCCTCCTATCAGCAAA
GGTCGGGATCCACCACGCTCCCATGGTCCTAAGGCCTCTGGAGACGAGACGGACCGGCGTCAGCGCCGGCGGGAGGCGGA
GGAGCAGGAGTAACTGTTACTGATAT--GGAAGCCATTGCCTTAATGCCTTAATGGTGGTGGATCAAGTAGACAACCCTG
GTCTTGATCTCATGAGGACGTCCCGCTGCAAAAGTAAAACAGGTGACTGAAAAGTTCGACGGGTTATATTTTTCAGCTTG
ATTTGACGACCGAACCGAAAGTGCTTGCTATGATGGTATCTATCGAACACGCAGTAAGTCTAAGATTGCACCTGATATCC
CACCATGTTAAGATGTACTGTAGTACATTTCCGAATGTGGATGCGCATATGTATAG--CATACACCAATTGCTCCATCTG
CTACAATATCATCGGGCTA-------------------------------------------------------------
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>chr1D_93
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-------------AT-GTCGTCCACATGGACGGGTAGTTTTT-CGGCGAGGGAGAATAAGAAAGAGGAGAGGTACAAGCT
CATGTTTGATAGGCAAAAGGAGATGATAGATTGAGACTGGAAGAGGGCGGAGAAGAAGATTGAAATTGAGAGCGAGAAGT
TCGAGTTGGAGAAGCAAGAGGCGGCGATCAAATGGGAGCTCGAGAAGGCCAAGACGTTTGGAGAGATTGAGCTTGAGAGA
GGGAGGTTGCAACTC-GCACGGGACGCGGATGATGTGAAGATCATGTTGGCGTACGAAACCCTCTTTGATGAGC--ATGC
AAAGAAGTGG-ATTGCAGATAAGAAGAAAGAGATCCACGAGCGTAGAGAGTACGAGGCGGCGAGGGCGGCTGCGGCAGCA
GCAGAGCATGCGGC-AAATATGCAGGCGGAGCA-AGCAATCTGGATACAGGCGGAGTAGGAGGCAA---GGATGGCCTCG
GAGCAGGTGGCATGGACAGCGTCCGACCAGTGATCCGGC-----------------------------------------
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-----------------------------------------------------CAGCAAGCGAGGTATCCATCACGCTCG
GACATTTATTTCATTTTCGCATGTCC----------GA-C---TTGTTGAATTATGATTTGCTTTGCTTTATTCCAAACT
GTTGAATTCGAACAATTTGTATCGTATGATTGACGTGCATGGATTGCGTAGATTTGAGGATCCGCATTTGAGGTATGTGG
ATGTGCGG------------------------------------------------------------------------
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>chr1D_806
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-----------------------------------------------------------CTCA-----------------
------------GGATCCACGATTTCGAGTGTGCCCACAGGACACCGGATCGATGTAAGGCCACACGTGCTACAGTCCAG
GTTTACACAAGTTTCCATAGACGCGCTGCATTGCCCTCCAAAACTTTCAAGTGTGTATAAATGCCCTACAAAAAGAGATT
TCCCACCATCTCACTCCACTCTCTCCAAAGCTGCCCGCGATCCCGATGGCGGCCAGCCATGCCCACTCGCCGACCCTTTC
CTCGTCCGAAACCATAATGGCCGCCCTCCTATCATCCGTTCCCGCCGTGCGGCTCCCTTCGCTCGTCCGGGCGCTTGCCG
CAGACGCGCGCCGGCAGCGCGGCCGCCTCGCATTCCTCCTCCTCTCGCTGCCGCATTTCGCCCGCGCCCTCGCGCGGCTC
CGCTCCATGCCGCTCCCAGCCAAGGCCGCGCTGCTCGGCCGCGTGCTCCTCCGCTCACTCCTCATGCTGCTCCCGGCGCT
CTCCCCCGACGGCTCCCACCACCTTCTACGCCTCCCGACGCCCGACCTCGACGCCGCGCTCCTGCTCGTGGCCATGTGCG
ACTCCTACTCCCCGGCCGCCTCCTCCGCGTCGCCCGTGGACTGGCACGCGCTGCTCGTCGACGACGTGGTGCGCAACGCG
CTCTCCATCTCCGGCCTCGGCGGCACGCCTTGGGCCACTGTCGCCCCCTACCTCGACGCGGCCGCTAAGTGCCGCCGGTT
CGCGGACGTCGTGTCGGAGGACCGCGCCGTGGCCGGCGTCGGCAGCGGC---AACAAGGACAGCGTGGGGCGCGGAGGCG
CGTCGCACGCGACCGTGCTGGCGCTGCCGACCGCGCCCGGGGACGGGACCCCGTGCGCGATCTGCAGGGAGGAGATGGCG
CCCGGGCGCGGCGGGGTGTGCGTGCTGCGTCCCTGCGGGCACCGATTCCACTGGCCGTGCGCGCTGCGGTGGCTGGCGCG
CCGCAACACCTGCCCGTGCTGCCGCGCCGAGCTGCCCGCGGAGGACGCGCTCGCCGAGACCCGGCGCCTGTGGCGCGCGG
TCGACAGGATGGCGGGAGACAGCGGCGGCTGTGCGTGACAGCGCCGGCTGGATCAGAGCGCGGGTGGCA--TACGGGACG
TGCGTTTGGACGTGCTCGCGTGTCCCGGTCT-------CCAGTTGCAAGTACTGGCGTCAGATTCGTGTGGATGGCGATG
GCTTTTGGTGGGCCCGCATGCCGAATAATGGTG---TAGGATTACTGTTAGGTACATAAACAAATGGAATGAGACCGAAT
GTATACTCGTGATTAAGACTCATCATGCCGTATCATCACAATGCAAATTGTGGGTTTAGTTTTGCAGTTTGTGTTAGCTT
TGGTGGATCCGAAGCAGGTTTCGCGGGAGAAGATAGG----------------------------------------TTG
GTGATGATGTTGGCGCCTCGAACAACATGCATTATGGTT------------------------------GTGTCGATTAT
TGTAAGATC----GTAGTACGGTTACTTT---------------------------------------------------
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---GCCGGAGTAACTGTTGCTGATATATGGAAGCCATTGCCTGAACGCTGAATGGTGGA-----CTAGTGGACGACCCCG
GTATTGATCTCATGAGGACGTCCTGCTGC------AAAACAGGTGACTGAAAAGTTCGACGGGTTATATTTTTCAGCTTG
ATTTGACGACCGAGCCGAAAGTGGTTGCTATGATGGTATCTATCGAACACGCAGTAAGTCTAAGATTGCACCTGATATCC
CACCGTGTTAACATGTACTGTAGTGCATTTCCGAGAGTGGATGGGCATATATTTATATCATACACCAATTGCTTGAGCTG
TTACAATATCATCGGG----------------------------------------------------------------
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----TTATTCTGAGATGAGATGGCCATGTCGAACTGTCCACTTCATCATGTAGCAAGGGGGGCGGATGGGCATGTCGAAA
CAGCAATCAGGGCAGACGGGCGCGCGTGGACGCATCTT
>SNPs
---------------S------------------------S---------------------------------------
S-----------------------S-------------------------------------------------------
-----------------------------SS-------------------------S--------------S--------
-----------------------S----------S---------------------------------------------
-----------------------------S-----------S------S------------------------S------
---------------S------------------S---------------------------------------------
-------------------------------S--------------------------S---------------------
-------------------S---S--------------------------------------------------------
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-----------------------------------------------------S----S---------------------
---------S-S------S-----S----------------------------------S-----SS-----------S-
---S---S----S-------------------S------S----------S-------------------S---------
--S--S--S----S----SSSSS-SSSSS-SSSSSSSS--SSSS---SSSSSSSSSSSS---------------------
-------------------------S---------S-S--S---------------------------------------
------------------------------S-----------------------------S-------------------
-------------------------S---------------------------------------------S--------
------------------------------------S-------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------S------S----------------------
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----------S---------------------------------------------------------------------
-----------------------------------------------------S--------------------------
-------------------------------------S------------------------------------------
-------------S------------------------------------------------------------------
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------------------S-----------------------------------------------------------S-
--------------------------------SSSS--------------------------------------------
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-------------------------------------------------------S-S-------------------S--
----------------------------------S---------------------------------------------
-----SSSSSSSS--------S----------------------------------------------------------
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-----S-----------------------------------------------------------S--S-----------
-S-----SSSSSS-S--SS---S----------------S-------------------------------------S--
------------------------------------------------------------------S----------S--
-------S---------------------------S------------------S-------------------------
----------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-------S-----------------------------S----------------S---------------------
------S------------S------S-----------
>forward_774
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----------------------------------GTCTGACAAGTGATCCGGCA--------------------------
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>reverse_3358
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-----------------------------------------------------------------------------CTG
ATTTGACGACCGAACCG---------------------------------------------------------------
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