>input_sequence_66566
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--------------------------------------------------------------------ATGGAGCTCGTA
TTCTGTGATGAAGCGCTGGCCATTGTCGTCCCCATAGCTGCCTACTGGGTCTACTCCGGCATGTACATGGCGCTTGGACG
GTCCATGGACCAGTACAGGCTACACCCAAGGGACGAGGAGCGCAGCAAGAACCTCGTGCCCAAGCGCGACGTCGTCAAGG
GCGTCCTCCTCCAGCAACTCCTGCAGGCCGCCGTCGCCGCCACCATTTTCACGGTATGTTAG---AACTC----TGCACG
CATGGACCTGCAAACATTCATACATATA-------AACTTACATAGTCACCGACACGTACCTACC---GCAGCTTCGAGG
CAAAAGCACCGGGACGGCCGCCGGCGACGCACTTCAGCGGGCGACCTGGGCCATGAGCCTGACGGTGGCGCTGCAGATCG
CGGTGGGCATGGCCGTGCTGGACGGGTGGCAGTACGTGTGGCACCGGTACATGCACCTCAACAAGTTCCTGTACCGGCAC
GTCCACTCGTGGCACCACCGCCTCGTCGTGCCCTACGCCTTCGGCGCGCAGTACAACCACCCCGTGGAGGGCCTCCTCCT
CGACACCGTCGGCGGGGCGCTCGCCTTCCTCGCCTCCGGCATGTCGCCCCGCGTCTCCATCTTCTTCTTCACGCTCTGCA
CCGTCAAGGGCGTGGACGACCACTGTGGCCTGTGGCTGCCGGGGAACGTGTTCCGCCTCTGCTTCTGGAACAATACGGCG
TACCACGACGTGCACCATCAGCTGCGCTCTAGCAGATACAACTTCTCGCAGCCCTTCTTTGTGACGTGGGACAAGGTGTT
TGGGACGCACATGCCCTATGTGGTCGAGC---ACAGGCCCCAAGGAGGGCTCCACGTACGGCCCATGGAAGCCCTTAGCT
AA------------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G380700
AGAAACAACCAGTGTAGATAAGACCTATAGCTTACACTCTTGATCTCGAGACCATGTGCTCAAAAGCACCACCAAACTTA
AGTCACCCTGTATTGTCGTCCCTGTTTTCATGAAGTCATTGTTCCAAGCCAAAGCATCAAGCCTCGACAACCATACACGT
TCATATACCTAATGTGGATATCATCACACAAACATGACATAAAATACCATTGAATATATGCCACATAATATCCTAATTTG
TTGATGCTTCGACATTTCTCGCATCCTTACCAATGTTCCAACAACATTAGCAAATTGTGTAGTTTCAGGCCCAATACGCT
GACCAATAGTGATGCAAATGGGCAGGCTAGCGGGCAAATACCATAGCATAAATGCAGTGTTGATTTTAGACACAAGTGAT
GAATAAATTTTAATCTAGTTGATGGGTTTGTCAGGACAAAGCGCGCTGCCGCTTGCACCCTGATTTCTCTTGAATGAGGT
TTTGAGTCTTTGGGGTTCTCCCTTGGATCGTCACACACAAGCTTA-----TACTAAACGACTAAAATCCACACATGGAAT
GACCGATATG-TTGACTAAATTCCATACGTGGAACGCGTCGGGCTTGAACCAATTTTGACTAAATAATAAATTCCTAGGC
GCATGGAACGCCTTGCTTGAACGACTTTTGACTAAACTCCGTATGTGG-AACGTCTGGGCCGGGTAAAGCAACAGAATTT
CTATGGCTAAGATCTACTAAAATCTTCTCTCGGGGTAAAGAAATATAAGTGCGTTTAGATCACTACTTTAAAGATCTAAT
AAACACTATTATATTTTTTTACGGAGGGAGTAGATGTTTAAG-AGATTCGGAAGAAAGAGTCCGATGATTACAGCCTTGA
CAACACTACATATCGGGTCGTATGACAGCGACCAC-------------CATTCTCATCGGTCGATATA----AACTCACA
GCACCAGTG---TACTACCAGACACCGCTAGCAAAAGCAAGCAACGTACTACTAGAACGAACAGTCACATGGAGCTCGTA
TTCTGTGATGAAGCGCTGGCCATTGTCGTCCCCATAGCTGCCTACTGGGTCTACTCCGGCATGTACATGGCGCTTGGACG
GTCCATGGACCAGTACAGGCTACACCCAAGGGACGAGGAGCGCAGCAAGAACCTCGTGCCCAAGCGCGACGTCGTCAAGG
GCGTCCTCCTCCAGCAACTCCTGCAGGCCGCCGTCGCCGCCACCATTTTCACGGTATGTTAG---AACTC----TGCACG
CATGGACCTGCAAACATTCATACATATA-------AACTTACATAGTCACCGACACGTACCTACC---GCAGCTTCGAGG
CAAAAGCACCGGGACGGCCGCCGGCGACGCACTTCAGCGGGCGACCTGGGCCATGAGCCTGACGGTGGCGCTGCAGATCG
CGGTGGGCATGGCCGTGCTGGACGGGTGGCAGTACGTGTGGCACCGGTACATGCACCTCAACAAGTTCCTGTACCGGCAC
GTCCACTCGTGGCACCACCGCCTCGTCGTGCCCTACGCCTTCGGCGCGCAGTACAACCACCCCGTGGAGGGCCTCCTCCT
CGACACCGTCGGCGGGGCGCTCGCCTTCCTCGCCTCCGGCATGTCGCCCCGCGTCTCCATCTTCTTCTTCACGCTCTGCA
CCGTCAAGGGCGTGGACGACCACTGTGGCCTGTGGCTGCCGGGGAACGTGTTCCGCCTCTGCTTCTGGAACAATACGGCG
TACCACGACGTGCACCATCAGCTGCGCTCTAGCAGATACAACTTCTCGCAGCCCTTCTTTGTGACGTGGGACAAGGTGTT
TGGGACGCACATGCCCTATGTGGTCGAGC---ACAGGCCCCAAGGAGGGCTCCACGTACGGCCCATGGAAGCCCTTAGCT
AAGCATATT---GTGTTTCAGATTTAACTCTATGTAAGCGGTGAGGATGACATGGAAGCACGCACACGGGAGCAGACATA
TGATTGGTTGGGCTAGGGATGGATGGATTACATTTTATGTATTTATTCTACTGACAAGATTAGGATTTGTTTTTTTTTAA
TCCTAGCTAACGGACGTGTGGTTTGGTTTAGGGATATGAAATGGATATATGTTGGTAGGTTTGTTGTTTTCCTGTGTTGT
GCCGTACAGATGGATTTTGTTGGTGGAATCCATGTTTGACCCCAATAGGGATGACAGACAACACATGTCGCTCTATGGGT
TGACGACGCTCGAGTCTCGGTCGATCGACCCTGGGTGCATTTCGTCGCGTGCGGGTGTAGACTTGATTCGTGCCAATTAT
AACTTTGTAAGAAGATTTTGGTATGGCAAACAATATGTATATTTGCTGTACACGAAGAATATGTATATCGGGACAAGCAT
GCATGCACTAAGGCTAGCGGAAAACAGAATATGCTACAGTTGAATGAGGCTACACACAGTGGGGAGTATCATGAGTGAGG
CGTTTTGAAGCTCGACCTCAATATATAGAGGCCGGATTTTTTGAAAAAAAAAATCAAAATCAACCTTTTCATTTTCAAAA
AAATCTGAAAAAAAATACAAGTAAACAATGATGTTATGTGTTTGCGTATAAAATTTCAGGATGAAATACCTTAAAATGTG
ATCTATGCAAAAAAGGCAAATTTATGGACTTTGAGGATGAACAGTGGATCTACTAAAATGCTTCAGATTTGTTCTTTATG
TGTAGCACACATTTTATGGTATTTCATCCTGTAAAGTTACACACATGCATTATGTTTCTAAGTATATGTACATTTTTTCA
AAAATAATTGAAACGTGAAAATTTGAATCTTGATCAATTCAAATCCGGCCTCTATTGAGCATTCTTTTGAGTATCATATA
GTAATATCATGCATATAATACTAGTGTACGATATTTCCTTCACAG
>chr4A_474
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-------------------------------------------------------------------------ATGAGGT
TTTGAGTTTTGGGGATTCTCCCTTGGACCGACACGCACAAGCTTA-----TACTAAACGACTAAAATCCACACATGGAAC
GACCGATATTATTGACTAAATTACGTATGTGGAACACGTCCGGCTTGAACCACTTTTGACTAAG---TAAATTCCTATGT
GCATGGAACGCCTTGCTTGAACGACTTTGGGCTGTATTCCGTATGTGGAACGTCT------AGGTAAAGCAACAGAATTT
CCATGGCCAAGATCCACTAAAATCTACTGC--------------------------------------------------
------------------------------TAGATTTTAAAG-AAAATTC-----AAGAGTCCGATGATTACAGCTTGAC
TA----------------------------GGGAGTACAACCAGCTAGCATTCTCATCGGTCGATATA----AACCCAGA
GCGCCAGTG---TACTACCAGACACCGCTAGCAAAAGCAAAGC---TACTACTAGAACCAACAGTGACATGGAGCTCGTA
TTCTCTGATGAAGCCCTGGCCATTGTCGTCCCCATAGCTGCCTACTGGGTCTACTCCGGCATGTACATGGCGCTTGGACG
GTCCATGGACCAGTACAGGCTACACCCAAGGGACGAGGAGCGCAGCAAGAACCTCGTGCCCAAGCGCGACGTCGTCAAGG
TCGTCCTCCTCCAGCAGCTCCTGCAGGCCGCCGTCGCCGCCACCGTTTTCACGGTAGTATATAACAGCTCTGCATGCATG
CATCGACCTGTATACACATGAATTACTTGTACTTACACTG--------------ACGTACCTATACGGACAGCTGGGAGG
CGAAATCCCC------GCCGCCGGCGAATCACGGCAGCGGACGACCTGGGCCATCTGCCTGACGGTGGCGCTGCAGATCG
CTGTGGGCATGGCCGTGCTGGACGGGTGGCAGTACGCGTGGCACCGGTACATGCACCGCAACAAGTTCCTGTACCGGCAC
GTCCACTCGTGGCACCACCGCCTCGTCGTGCCCTACGCCTTCGGCGCGCAGTACAACCACCCCGTGGAGGGCCTCCTCCT
GGACACCGTCGGCGGTGCGCTCGCCTTCCTCGCCTCCGGCATGTCGCCCCGCGTCTCCATCTTCTTCTTCACGCTCTGCA
CCATCAAGGGCGTCGACGACCACTGTGGCCTGTGGCTGCCGGGGAACGTGTTCCGCCTCTGCTTCTGGAACAACACGGCG
TACCACGACGTCCACCATCAGCCGCGCGCCGGCAGATACAACTTCTCGCAGCCCTTCTTTGTGACGTGGGACAAGGTGTT
TGGGACGCACATGCCCTACGTCGTCGAGC---ACAGGCCCCAAGGAGGGCTCCACGTTCGGCCCATGGAAGCCCTTAGCT
AAGCATATT---GTGTTTCAGATTTGACTGTATGT---------------------------------------------
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>chr7A_474
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-------------------------------------------------------------------------ATGAGGT
TTTGAGTTTTGGGGATTCTCCCTTGAATCGACACGCACAAGCTTATATATTACTAAACGACTAAAATCCACACATGGAAC
GACCGATATG-TTGACTAAATTCCGTATGTGGAACACGTCCAGCTTGAACCACTTTTGACTAA--AATAAATTCCTATGT
CCATGGAACGCCTTGCTTGAACGACTTTTGACTAAATTCCGTATGTGG-ACGTCT------GGGTAAAGCAACAGAATTT
CTATATGGCCAAG--------ATCTACTGC--------------------------------------------------
------------------------------TAGATTTTAAAG-AAAATTC-----AAGAGTCCGATGATTACAGCTTGAC
AACGGAGTCCCATGACCGAGGCAATCTGT---------AACCAGCTAGCATTTTCATCGGTCGATATA----AACCCATA
GAGCCAGTCTACTACTACCAGACACCGCTAGCAAAAGCAAAGC---TACTACTAGAACCAACAGTGACATGGAGCTCATA
TTCTCTGATGAAGCGCTGGCCATTGTCGTCCCCATAGCTGCCTACTGGGTCTACTCCGGCATGTACATGGCGCTTGGACG
GTCCATGGACCAGTACAGGCTACACCCAAGGGAGGAGGAGCGCAGCAAGAACCTCGTGCCCAAGCGCGACGTCGTCAAGG
GCGTCCTCCTCCAGCAGCTCGTGCAGGCCGCCGTCGCCGCCGCCATTTTCACAGTATGTTAGTACAACTC----TGCATG
CATGGACATGCAAACCTTCATATACATATGATATAA------------------ACGTACCTACC---GCAGCTTCGAGG
CGAAAGCACCGGGACGGCCGCCGGCGAAGCACGGCAGCGGACGACCTGGGCAACGTGGGTGACGGTGGCGATGCAGATCG
CGGTGGGCATGGCCGTGCTGGACGGGTGGCAGTATGCGTGGCACCGGTACATGCACCTCAACAAGTTCCTGTGCCGGCAC
GTCCACTCGTGGCACCACCGCCTTGTCGTGCCCTACGCCTTGGGCGCGCAGTACAACCACCCCATGGAGGGCCTCCTCCT
CGACACCGTCGGCGGCGCGCTCGCCTTCCTCGCCTCCGGCATGGCGCCCCGCGTCTCCATCTTCTTCTTCACGCTCTGCA
CCGTCAAGGGCGTCGACGACCACTGCGGCCTGTGGCTGCCAGGGAACGTGTTCCGCCTCTGCTTCTGGAACAACACGGCA
TACCACGACATCCACCATCAGCCGCGAGCCAGCAGATACAACTTCTCGCAGCCCTTCTTTGTGACGTGGGACAAGGTGTT
TGGCACGCACATGCCCTATGTTGTCGAGC---ACAGGACCCAAGGAGGGCTCCACGTGCGGCCCGTGGAAGCCCTTAACT
AAGCATATTGTTGTGTTTCAGATTTGACTTATATGT--------------------------------------------
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>chr7D_476
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---------------------------------------------------------------------------GAGGT
TTTGAGTTTTGGGGATTCTCCCTTGGATCGACACGCACAAGCTTA-----TACTAAACGACTAAAATCCAAACATGGAAC
GACCGATATG-TTGACTAAATTCCGTATGTTGAACACGTCCGGCTTGAACCACTTTTGACTAAG---TAAATTCCTATGT
GCATGGAACGCCTTGCTTGAACGACTTTTGACTAAATTCCGTATGTGG-GACGTCTGGGTAAAGC---------------
----------------------TCTACAGC--------------------------------------------------
------------------------------TAGATTTGAAAGAAAAATTC-----AAGAGTCCGATGATTACAGCTTGAC
AACGGAGTCCCATGACCGAGGCAATCTGTTGGGAGTATAACCAGCTAGCATTCTCATCGGTCGATATATATAAACCCAGA
GCGCCGGTG---TACTACCAGACACTGCTAGCAAAAGCAAAGT---TACTACTAGAACGAACAGTGACATGGAGCTCGTA
TTCTCTGATGAAGCGTTGGCCATTGTCGTCCCCATAGCTGCCTACTGGGTCTACTCCGGCATGTACATGGCGCTTGGACG
GTCCATGGACCAGTACAGGCTACACCCAAGGGAGGAGGAGCGCAACAAGAACCTGGTGTCCAAGCGCGACGTCGTCAAGG
GCGTCCTCCTCCAGCAGCTCGTGCAGGCCGCCGTCGCCGCCGCCATTTTCACGGTATA--AG---AATTC----TCCATG
CATGGACCTGCAAACATTCATATACATATGATATAAACTTACACAGTCACCGACAAGTACCCACT---GCAGCTTCGAGG
CGAAAGCACCGGGACGGCCGCCGGCGAAGCACGGCAGCGGACGACCTGGGCCACGTGCCTGACGGTAGCGATGCAGATCG
TGGTGGGCATGTCCATGCTGGACGGGTGGCAGTACGCGTGGCACCGGTACATGCACCGCAACAAGTTCCTGTACCGGCAC
GTCCACTCGTGGCACCACCGCCTCGTCGTGCCCTACGCCTTCGGTGCACAGTACAACCACCCCGTGGAGGGCCTCCTCCT
CGACACCGGCGGCGGCGTGCTCGCCTTCCTCGCCTCCGGCATGTCGCCCCGCGTCTCCATCTTCTTCTTCACGCTCTGCA
CCGTCAAGGGCGTGGACGACCACTGCGGCCTGTGGCTGCCGGGGAACGTGTTCCGCCTCTGCTTCTGGAACAACACGTTG
TACCACGACGTCCACCATCAGCCGCGCGCTAGCAGATACAACTTCTCGCAGCCCTTCTTTGTGACGTGGGACAAGGTGTT
TGGGACGCACATGCCCTATGTGGTCGAGC---ACAGGCCCCAAGGAGGCCTCCTCGTGCGGCCCATGGAAGCCCTTAACT
AAGCATATT---GTGTTTCATATTTGACTGTATGT---------------------------------------------
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>chr6D_1302
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---------------------------------------------------------------CC---ACAGCTTGTAGG
CGAGAGCACCGCGACGGCCACCGGCAGAGCACCGCAGCGGACCTGGACCGGGACGTGCTTGACGGTGGCGTGCCAGATCG
GAGTGGCCATGGCCGTGCTCGACGGGTGGCAGTACGTGTGGCACCGGTGCATGCACCTCAACAGGTTCCTGTACCGGCAC
GTCCACTCGTGGCATCACCGCCTCGTCGTGCCCTACGCCTTCGGCGCCCTGTACAACCACCCCATCGAGGGCCTCCTCCT
CGACACCATGGGCGGCGCGCTCGGCTTCCTCGCCTCCGGCATGTCCCCGCGCGTCTCCATCTTCTTCTTCACGCTCTGCA
CCGTCAAGGCCGTCGACGACCACTGCGGCATGTGGCTGCCGGGGAACATGTTCCACCGGTGCTTCTGGAACAACACGGCG
TACCACGATGTCCACCATCAGCTGCGCACTAGTGGATACAACTTCTCGCAGCCCTTCTTCGTGACATGGGACAGGGTGTT
TGGGACGCACATGCCCTATGTGATCGAGGAAGACAGGGCCCACGGTGTGCTCCGGGCGCGGCCCATGG------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------
-------S--S---S---------------S---S--------------------------------------------S
------------------------S--S-------S----S-----------S----------SS------------S-S
------------------------------------S----------------------SS-------------------
-------S------S----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--S-----S-S-SSSSSSS--------------------S-SSS
S-SSSSSS-SS--SSSSSS-SSSSS-S-SSSSS-S----------------------------------------S--S-
--S-------------------------------------SSSSSS-------------------S--------------
----S---------------------------------------------------------------------------
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----------------S-------------------------------------------------------------S-
----------------------S-S------------------S------------------------------------
-S-------------------------S----SS------S--------------S------------------------
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---------------S----------------------------------------------------------------
-------------------------------------------------------------------------S------
-----------S---------------S----------------------------------------------------
---------------------------------------------------------S----------------------
-------------------------S---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1004
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------------------------CCGCTAGCAAAAGCAAGCAA------------------------------------
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>reverse_2008
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-------TTGGGCTAGGGATGGATGGA-----------------------------------------------------
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