>input_sequence_66558
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--------ATGGAGACGAGACGTCCAGCGGTTTCCGCCGTGTCCGTGGGG-----------------------------G
CGGTGGTGCTGATCCTGGTCTGGTCGCCGGCGGCGGCCGTAGCAAGCGGTGGCTGGATGGACGCGCACGCTACATTCTAC
GGTGATGAGACCGGAGCTGAGACCATGCGTAAGCAAACCAACTACTCTGATTCGTCCCCGCATCAGCACGCGAAGTCTTT
ACCTA---ATTAACATTCTCCACGGGATACATATGCATGTGCCATGCAGAGGGTGCGTGTGGGTACGGTAACCTATTCGA
GCAGGGGTACGGGCTGGACACGACAGCGCTGAGCGTGGCCCTCTTCAGCGACGGCTGGTCCTGCGGCGGCTGCTACGAGA
TCCAGTGCCACGGCGACCCCCACTGCAAGCCCGGCGGGGCGCAAGTGACGGTGACGGCAACCAACCTCTGCCCGGCCAAC
TACTCCAAGCCCTATGAGAACTGGTGCAACCCGCCGCTGAAGCACTTCGACCTCTCCAAGCCCATGTTCCTTCGCCTCGT
CACCGACTTCCACGTCGGCATCATCCCCGTGCAGTACCGCCGCGTGCCTTGCGCCAAGAAGGGCGGCATCAGGATAGAGA
TGACGGGCAACCAGTACTGGGTCGGCGTGCTCGTCTTCAACGTCGCCGGACCCGGCGAAGTCAAGGTGTTGGCCGTGAAA
GGGGCCAAGGACGGGCAGTGGCGGAACATGAAGAGGAACTGGGGGCAGATCTGGGACGGACATGTCCAAAATCTCGTCGG
TCAGGGGCTCTCGTTCCGTGTGGTCGCAAGCGACGGCCGCTCCGTCGTCCTCGACGGCGTCGTGCCGGCAAGCTGGACGA
TCGGCCAGAGCTTCGAGGGCAAAGGGCAATTCTGA---------------------------------------------
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---------------------------------------------
>chr7D_1_TraesCS7D01G314100
ATTTTTAAAAAAATACGTGAACTTTTACAAATTCGTGAATATTTTTCAAAATCGATGAACTTTTTTCTCAGATCGATGAA
T--------------------TTTTTTTCAAAATCGATGAACTATTTT---AAACCAATGAACTTTTTTC-AAAACCGAT
GAACTCTTTTTCAAAACTGAATGAATTTTTCAAATTCGATGAACTTTTTTTTAAATGAATGAACTTTTTTCAAAATCGAT
GAACTTTTTACAA---------------------AACCGATGAACTCTTTTTTGAGAATCGATGAACTTTTTTTCTGATT
TTGTGAACTTCTTTTGGGAACCGATGAACTTTTTTCAATTTTCATGAATATTTTTGAATTCGTGAACTTTTTGAATACGT
GAACTTTTTTCTAATTCGTGATT--TTTTTAAATCTGTGGAGTTTTGAATTTAGTGCACATTCTTGTCAAAAAAATCAAG
TTTTCTATTTTTTCA-AAATAATTCAAAAAATTACCTAGCAATGTACGTGCAATAAATAGCATGGCTACAGTTCTTCGTA
CTTATATACTGTCGCACTATACTATTTCACATGTGCCCAGTTGGTGTAGTGGCCAACAAACCACCGGCGCTCTCGTCAAT
AATCCCTGTTTGGGAACGTCCTCAAGGTTTAAAATAGACCGGAATCAAAGAATTCGGTGTGCTAATTTCCAAGATTACAA
GTTCAGGAATCGATTTAGCTTTCGTCTATAAGTTCAAGATTTATTTTGAACTTTTTCCTTTGTTGAGCCGCATCTTAAAA
TATCCTCCATTAATGCCGCATATTAGCATGCATTTACTCATGGACAAATGCAGTCTGCTGCCACCGGCAGCTTAAAGATA
AAGTACAACATATGGACCTAGCCCACGCAAAAGGCCAAAACTCCGCAGCCAGTGGCATAAGTGCGTACACATAAAGCTCA
TGGCTCAAGAGGTAGCTACCTCTCAATCATCGCAAAGTTGAATTGGGGTACGAGTGCTCAGACACAGATCACACTAGTTT
AGTGAAGAATGGAGACGAGACGTCCAGCGGTTTCCGCCGTGTCCGTGGGG-----------------------------G
CGGTGGTGCTGATCCTGGTCTGGTCGCCGGCGGCGGCCGTAGCAAGCGGTGGCTGGATGGACGCGCACGCTACATTCTAC
GGTGATGAGACCGGAGCTGAGACCATGCGTAAGCAAACCAACTACTCTGATTCGTCCCCGCATCAGCACGCGAAGTCTTT
ACCTA---ATTAACATTCTCCACGGGATACATATGCATGTGCCATGCAGAGGGTGCGTGTGGGTACGGTAACCTATTCGA
GCAGGGGTACGGGCTGGACACGACAGCGCTGAGCGTGGCCCTCTTCAGCGACGGCTGGTCCTGCGGCGGCTGCTACGAGA
TCCAGTGCCACGGCGACCCCCACTGCAAGCCCGGCGGGGCGCAAGTGACGGTGACGGCAACCAACCTCTGCCCGGCCAAC
TACTCCAAGCCCTATGAGAACTGGTGCAACCCGCCGCTGAAGCACTTCGACCTCTCCAAGCCCATGTTCCTTCGCCTCGT
CACCGACTTCCACGTCGGCATCATCCCCGTGCAGTACCGCCGCGTGCCTTGCGCCAAGAAGGGCGGCATCAGGATAGAGA
TGACGGGCAACCAGTACTGGGTCGGCGTGCTCGTCTTCAACGTCGCCGGACCCGGCGAAGTCAAGGTGTTGGCCGTGAAA
GGGGCCAAGGACGGGCAGTGGCGGAACATGAAGAGGAACTGGGGGCAGATCTGGGACGGACATGTCCAAAATCTCGTCGG
TCAGGGGCTCTCGTTCCGTGTGGTCGCAAGCGACGGCCGCTCCGTCGTCCTCGACGGCGTCGTGCCGGCAAGCTGGACGA
TCGGCCAGAGCTTCGAGGGCAAAGGGCAATTCTGATAGATCGACCACCGTAGCTTGTAAGTGTAACAAT---AGGTACAA
TAATTGATAGTCATGTATGTGTTTCTGCATCCTTCGATCGGTATTTGCTACAGTAAGTCATCAAACTATGGTGCTGCGTG
AGTGTGTGTTCACTTCTGATTCGGGGTATACATTTGTTGTTTTTCTTTTTATTTTAGAAAAGGAGGTTGACCTCCGG--C
CTCTGTATCAATCGATGCATGCAGCCATATTATTAAAAAG-CGTAATAAGGTCTTAGGTTCCAAGGAAGC----------
-----CAAGA--GAAAAAA---TAAATCTCTAAGGTGCCACATCGGGCAATAACGCG--------------------CCA
CATCCGGCGATAAAGAACAGACTACGATGCCTACACACCTAGTCTTTTATTAGCTCGCCATCCAAATCGGCTGAAGATAG
CCCGTGCAACCGTCTTCCAGCGGTTGCATCCAATATCCAAAAGCTCCCTGAAATCCGCATGAGTGAGTAACGACCACATA
CGGATCCAAGCTGTAGCTCTGTAGATAACCTGCAAAAAATTAGTGAAATTT-ATCCCATTAAAGATCATATCATTTCTAG
TGTTTCATATAGCCCAGAAAATTGCACATATCCCTATCCGAATATCTTTAGCTACTTGTATG-TCCACTCCATTAAGCCA
CGTCCCAAATAACGTGTTTATACTTGTGGGGGG-ATGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGCA
AGTGGACACTGGAGAAAGAGGTGTTTAATCGATTCATTTTGATCACAAAAACAGCACCTGGAGCTACCAACCCAATTCCT
TTTCAGCAAATTATTTTTGGTCAAAATAACTCCTTTGTGGACGAACCACATAAAGATTTTGATGC-GAAGCGTAAATTTA
ATCTTTCGTATGTGCAAAGACCTCGACAATGGCCCGGAATCAATTAAGTTCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGTGGTTGGCTTCCAACTAATGGTATCTGCTGAAGGAAATGT
>chr1D_1
ATTTTTTAGAAAACCCATGAACTTTTTAAAATTCGTGAACCTTTTTCGTAATTGATGAACTTTTTTCCCAAATCGCTGAA
CTTTGTTTTCAAAATTGATGATTTTTCTCAAAATTGACGAACTCTTTTTCAAAACCGATGAACATTTTTCAAAAACCGAT
GAACTCTTTT-CAAAACCGAATGAAGTTTTCAAAATTGATGAACATTTTCTCAAATCGATGAAC-TTTTTCAAAATCGAT
GAACTTTTTTTCAAAATTTATGAACTCTTTTCAGAATCGACGAAATCTTTTTTGAGAATCGATGAACCATTTTTA-GATT
TTGTCAACATTTTTTGA-AATCAATGAACTTTTTTTGACAACCAA----------------------------------T
GAACTTTTTTCTAATTCGCGATTCTTTTTTAAATCTGTGGACTTTTGAATTTTGTTCACGTTTTGTCAAAAGAAATCACA
TTTTCTAATTTTTTCCAAATAATTCAAAAATTTACCTAGCATTGTACGTGCAATAAATAGTGTGGCTACAATTCTTTGTA
CTTATATATTGTCGCGCTATAATATTTCACAAGTACCCAGTTGGTGTAGTGGCCAACAAACCA-----------------
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>chr7A_747
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--------------------------------------------------------------------------TTAAAA
TATTCTCCATTAATGCCGCATATTAGCATGCGCTTATTCGTGGACAAATGCAGTCTGGTGCCACTGGCAGCTTAGAGATA
CTCCGC-------------AGCCCACGCAAAAGGCCAAAACTCCGCAGCCAGTGGCATAAGTGCGTACACATAAAGATCA
TGACTCATGAGGTAACTACTTATCAATCATCGCAAAGTTGAATTGGGGTACAAGTGCTCAGACACAGATCACACTAGTTT
AGTGAAGAATGGAGACGAGACGTCCAGCGGTTTCCGCCGTGTCCGTGGGGCGGTGGTGCTGATCCTGGCTTGGTCGCCGG
CGG------------------------------CGGCCGTAGCAAGCGGTGGCTGGATGGACGCGCACGCTACCTTCTAC
GGCGATGAGACCGGAGCTGAGACCATGCGTAAGCAAACTAACTACTCAGATTCGACCCCGCATCATCACGCGAAGTTTTT
ACCTA---ATTAACATTCTCCACGGGATGCC--TGCATGTGCCATGCAGAGGGTGCGTGTGGGTACGGTAACCTATTCCA
GCAGGGGTACGGGCTGGACACTACAGCGCTGAGCGTGGCCCTCTTCAGCGACGGCTGGTCCTGCGGCGGCTGCTACGAGA
TCCAGTGCCACGGCGACCCGCACTGCAAGCCCGGCGGAGCGCCAGTGACGGTGACGGCAACCAACCTCTGCCCGGCCAAC
TACTCCAAGCCCTACGAGAACTGGTGCAACCCGCCGCTGAAGCACTTCGATCTCTCCAAGCCCATGTTCCTTCGCCTCGT
CACCGACTTCCACGTCGGCATCATCCCCGTGCAGTACCGACGCGTGCCTTGCGCCAAGAAGGGCGGCATCCGGATAGAGA
TGACGGGCAACCAGTACTGGGTCGGCGTGCTCGTCTTCAACGTCGCCGGTCCCGGCGAAGTCAAGGCGTTGGCCGTGAAA
GGGGCCAAGGACGGGCAGTGGCGGAACATGAAGAGGAACTGGGGACAGATCTGGGACGGAGATGTCCAAAATCTCGTCGG
GCAGGGGCTCTCGTTCCGTGTGGTCGCAAGCGACGGCCGCTCCGTCGTCCTCGGCGCCGTCGTGCCGGCAAGCTGGACGA
TCGGCCAGAGCTTCGAGGGCAAAGAGCAATTCTGATAGATCGACCAACGTAGCTTGTAAGTGTAACAATGCTAGGTACAA
TAATTGCTAGTCATGTATGTGTTTCTGCATCCTTA-----ACATTTGCTACCGTAAGTCATCAAACTATGGTGCTGCGTG
AGTGCGTGTTCACTTCTGATTCGGGGTATACATTTGTTGTTGTTTTT------TTA------------------------
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---------------------------------------------
>chr7B_815
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--------------------------------------------------------------ACTGGCAGCTTAGAGATA
CAGTACAACATATGGACCTAGCCCACGCAAAAGGCCAAAACTCCGCAGCCAGTGGCATAAGTGCGTACACATATAGCTCA
TGGCTCAAGAGGTAGCCACCTATCAATCATCGCAAAGTAGAATTGGGGTACGAGTGCTCACACACAGATCACACTAGTTT
AGTGAAGAATGGAGACGAGACGCCCAGCGGTTTCCGCCGTGTCCGTGGGG-----------------------------G
CGG------------------------------CGGCCGTAGCAAGCGGTGGCTGGATGGACGCGCACGCTACCTTCTAC
GGCGATGAGACCGGAGCTGAGACCATGCGTAAGCAAACTAAGTACTCCGATTCGACCCCGCATCATCACGCGAACTTTTT
ACCTATTAATTAACATTCTCCACGGGATGCC--TGCATGTGCCATGCAGAGGGTGCGTGTGGGTACGGTAACCTATTCGA
GCAGGGGTACGGGCTGGACACGACAGCGCTGAGCGTGGCCCTCTTCAGCGACGGCTGGTCCTGCGGCTGCTGCTACGAGA
TCCAGTGCCACGGCGACCCCCACTGCAAGCCCGGCGGGGCGCCAGTGACGGTGACGGCAACCAACCTCTGCCCGGCCAAC
TACTCCAAGCCCTACGAGAACTGGTGCAACCCGTCGCTGAAGCACTTCGACCTCTCCAAGCCCATGTTCCTTCGCCTCGT
CACCGACTTCCACGTCGGTATCATCCCCGTGCAGTACCGCCGCGTGCCTTGCGCCAAGAAGGGCGGCATCCGGATAGAGA
TGACGGGCAACCAGTACTGGGTCGGCGTGCTCGTCTTCAACGTCGCCGGTCCCGGCGAAGTCAAGGCGTTGGCCGTGAAA
GGGAGCAAGGACGGCCAGTGGCGGAACATGAAGGGGAACTGGGGACAGATCTGGGACGGAGATGTCCAAAATCTCGTCGG
GCAGGGGCTCTCGTTCCGTGTGGTCGCAAGCGACGGCCGCTCCGTCGTCCTCGGCGCCGTCGTGCCGGCAAGCTGGACGA
TCGGCCAGAGCTTCGAAGGCAAAGGGCAATTCTGATAGATCGACCACCGTAGCTTGTAAGTGCAACAGTGCTA-GTACAA
TAATTGCTAGTCATGTATGTGTTTCTGCATCCTTCGATCGACATTTGCTACGGTAAGTCATCAAACTATGGTGCTGCGTG
AGTGCGTGCTCACTTCTGATTCGGGGTATACATTTGTTGTTTTTCTT---------------------------------
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---------------------------------------------
>chr4D_2033
GTTAGT--------------------------------------------------------------------------
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----------------------------------------TTTTTTTTTCTTTTTAGGAAAGGAGGTTGACCTTCGG--C
CCCTGCATCAATCGATGCATGCAACCATATTATTAAAAAG-GATAACAAGGTCTTAGGTTTCAAGGAAGCTCATAAACCG
AGC--CAAGA--GAAAAAA---TAAATCTGTAAAGTGCCACATCCGGCAATAACGCG--------------------CCA
CATCCGGCGATAAAGAACAGACTACGATGCCTACACACCTAGTCTATTATTAGCTCGCCATCCAAATCGGCTGAAGATAG
CCCATGCAACCGTCTCCCAGCGGTTGCATCCAATATCCAAAAGCTCCCTGAAATCCGCATGAGTGAGTAACGACCACATA
CAGATCCAAGCTGTAGCTCTGTAGATAACCTGCAAAAAGTTGGTGAAGTTT-ATCCCATTAAAGATCATATCATTTCTAG
TGTTCCATATAGCCCAGAAAAGTGCACATATCCCTATCCGAATATTTTAGCTAC---GTGTG-TCCACTCCATTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCGTGGAGGG-TTGAACGTTAAAAGCTATATGAATTGATTGCCATAACAATTTTGCA
AGTGGACACTGGAGAAAGAGGTGTTTAATCGATTCATTTTGATCATAAAAACAACACCTGGAGCTACCAACCCAATTCCT
TTTCAGCAAACTATCTTTGGTCAAAATAACTCCTTTGTGGACGAACCACATAAAGATTTTGATGC-GAAGCGGAACTTTA
ATCTTCCATATGTGCAAAGACCTCGACAATGGCCCGGAATCAATTAAGTTCAAAAACATGGATTTCACAGAGAAAATTCC
ATTCGTGGTTAGCTTCCAACTAATGGTATCTGTCTG---------
>chr1B_2035
TGATTTTCT-----------------------------------------------------------------------
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------------------------------------------TTTTT------TTAGAAAAGGAGGTTGACCTCCGG--C
CTCTACATCAATCGATGCATGCATCCATATTATTAAAAAG-CGTAACAAGGTCTTAGGTTCCAAGGAAGCTTATAAACCG
AGC--CAAGA--GAAAAAA---TAAATATGTAAAGTGCCACATCCGGCAATAACACG--------------------CCA
CATCCGGCGATAAAGAATAGACTACGATGCCTACACAGCTAGTCTATTATTAGCTCGCCATCCAAATCAGCTGAAGATAG
CCCGTGCAACCGTCTGCCAACAGTTGCATCCAATATCCAAAAGCTCCCTAAAATCCACATGAGTGAGTAACGACCACGTA
CGGATCCAAGTTGTAGCTCTGTAGATAACCTCCAAAAAATTAGTGAAGTTT-ATCCCATTAAAGATCATATCATTTCTAG
TGTTCCATATAGCCCAGAAAAGTGCACATATCCCCATCCGAATATGTTTAGCTACTTGTATG-TCCACTCCATTAAGCCA
AGTCCCAAATAACGTGTTTATGCTCGTGGGGGG--TGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGAA
AGTGGACACTGGAGAAAGAGGTGTTTAATCGATTCATTTTGATCACAAAAACAACACCTGGAGCTACCAACCCAATTCCT
TTTCAGCAAATTATCTTTGGTCAAAATAACTCCTTTGTGGACGAACCACATAAAGATTTTGATGC-GAAGCAGAACTTTA
ATCTTCCATATGTGCAAAGACATCGACAATAGCCCGGAATCAATTAAGTTCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGTGGTTAGCTTCCAACTAATGGTATCT--------------
>chr1B_2039
TTT--TTTT-----------------------------------------------------------------------
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------------------------------------------TATTT------TTTGAAAAGGAGGATTACCTCCGG--C
CTCTGCATCAGTCGATGCATGCAGCCATATTATTAGAAAG-CGTAACGGAGTCTTACAATCCAATGCAGCTCAAAATCCG
AGC--AAAAAA-GAGTAAA---TAAATCTGTAAAGCGCCACATCCGGCAAGAAAGCG--------------------CCA
GAACCGGCGATAAAGAACAGGCTACGATGCCTACACACCTAGCCTATTATTCGCTCGCCATCCAAATCGGCTGAAGATAG
CCCGTGCTACCGTCTACCAGCAGTTGCACCCAATAACCATAGGCTCCCTGTAGTCCGCATGAGTGAGTAACGACCACATA
CGGATCCAGGCTGTAGCTCTGTAGATAACCTACAAAAAATTAGTGAAT-GTTGTCCCATTAAAAATCATATCATTTCTAG
TGTTCCATATAGCCCATAGTAATGCACATATCCCTATCCGAATATGTTTGACTATGTGTATGTCTTACTCCATTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCATTGGAGA-ATGAACGTTAAAAGCTATATGAATGGATCGCCACAACAATTTTGCA
AGTGGACACTCGAGAAAGAGGTGTTTAATCGTTTCGTTTTGATCGCAAAAATAGCACCTGGGATTACCAACCCAATTCCT
TTTCATCAGATTATCTTTGGTCAAGATGACTCCTTTGTGGACGAACCACATAAAGATCTTGATGC-GGAGTGGAACTTTA
ATCTTTCATATGTGTAAAGACCTCGACAATGGCCCAGAATCAATTAAGTTCAAATACATGGATTTCACATAGAATAATCC
ATTTGTGGTTAACTTCCAACTAATTTTATCTGC------------
>chr2B_2045
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------------------------------------------TTTTT------TTAGAAAAGGAGGTTGACCTCCGG--C
CTCTGCATCAATTGATGCATGCAGCCATATTATTAAAAAG-CATAACAAGGTCTTAGGTTCCAAGGAAGCTCATAAACCG
AGC--CAAGA--GAAAAAA---TAAATCTGTAAAGTGCCACATCCGGCAATAACGCG--------------------CCA
CATTTGGCGATAAAGAACAGACTACGATGCCTACACACCTAGTCTATTATTAGCTCGACATCCAAATCGGCTGAAGATAG
CCTGTGCAACCGTCTCCCAGCGGTTGCATCCAATATCCAAAAGCTCCCTGAAATCCGCATGAGTGAGTAACAACCACATA
TGGATCCAAGTTATAGCTCTGTAGATAACCTGCAAAAAATTAGTGAAG-TT-ATCCCATTAAAGATCATATCATTTCTAG
TATTCCATATAGCCCAGAAAAGTGCACATATCCCTATCCGAATATGTTTAGCTACTTGTATG-TCCACTCCATTAAGCCA
CGCCCCAAATAACGTGTTTACGCTCG-TGGGGG-ATGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGCC
AGTGGACACTGGAGAAAGAGGTGTTTACTCGATTCATTTTGATCACAAAAACAACACCTCGAGCTACCAACCCAATTCCT
TTTCAGCAAATTATCTTTGGTCAAAATAACTCCTTTGTGGATGAACCACATAAAGATTTTGATGC-GAAGCGGAACTTTA
ATCTTCCATATGTGCAAAGACCTCGACAATGGCCCGGAATCAATTAAGTTCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGTGGTTAGCTTCCAACTAATGGTATTTGC------------
>chr6A_2045
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------------------------------------------TTTTT------TTAGAAAAGGAGGTTGACCTCCGA--C
CTCTGCATCAATCGATGCATGCAACCATATTCTTAAAAAG-CATAACAATGTCTTAAGTTCCAAGGAAGCTTATAAACCG
AGC--AAAGA--GAAAAAA---TAAATCTGTAAA--------------------GCA--------------------CCA
TATCCGGCGATAAAGAACAGACTAAGATGCCTACACACCTAGCCTAGTATTAGCTCGCCATTCAAATCGACTAAAGATAG
CCCGTGCTAGCATCTCCCAGCGGTTGTACCCAATATCCAAAAGCTCCCTCAAGTCCGCATGAGTGAGTAACGACCACATA
CGGATACAAGCTGTAGCTCTGTAGATAACCTATAAATAATTAGTGAATTTT-ATCCCATTAAAAATCATAACATTTCTAG
TGTTCCATATAGCCCAGAATAGTGCACATATCCCTATCCGAATATGTTTAGCTATGTGTATG-TCCACTTCATTAAGCCA
TGTCCTAAATAACGTGTTTATACTCGTTGGGGG-ATGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGCA
GGCAGACAATGGAGAAAGAGGTGTTTAATCGATTCAATTTGATCATAAAAACAACATCTGGAGTTACCAACCCAATTCCT
TTTCAGCAAATTATTTTTGGTCAAAATAACTCCTTTGTGGACGAACCACATAATTTTTTTGATGC-GAAGCGGAACTTTA
ATCTTTCATATGTGCAAAGACCTCGACAATGACACAGAATCAATTAAGTCCAAATACATGGATGTCATAGAGAAAATTCC
ATTCGTGGTTAACTTCCAACTAATTGTATCT--------------
>chr1D_2045
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------------------------------------------TTTTT------TT-GAAAAGGAGGTTTACCTCCGG--C
CTCTGCACCGATCGGTGCATGCGGCCATATTATTAAAAAG-CGTAAGAAGGTCTTAAGTTCCAATGCTGCTCATAATCCG
AGC--AAAGA--GAAAAAA---TAAATCTGTAACGTGCGATATTCGGTGAAAACGCT--------------------CCA
CATCCGGCAATAAAGAATAGACCACGATGCCTACACACCTAGCCTATTATTAAGTCGCCATCCAAATCGGCTGAATATAG
CCCGTGCTACCGTCTCCCAGCGGTTGCACCCAATATCCAAAGGCTCCCTGAAATCCGCATAAGTGAGTAACGACCACATA
CGGATCCAAGCTATAGCTCTATAGATGACCTGCAAAAAGTTAGTGAAG-TTTGTCCCATTAAATATCATATCATTTCTCG
TGTTCCATATAGCCCATAAGAGTGCACATATCCCTATCTGAATACGTTTAGCTATATATTTG-TCCACTCCATTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCGTTGGGGG-ATGAATGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGCA
AGCGGACATCGGAGAAAGAGGTGTTTAATCGATTCATTTTGGTCAAAA---CAACATCTGGAGTTACCAACCCAATTTCT
TTTTAGCAAATTGTCTTTGGTCAAAATAACTCCTTTGTGCACGAACCACATAAAGATTTTGATGT-GAAGCGGAACTTTA
ATCTTCCATATGTGTAAAGACCTCGACAATGGACCGGAATCAATTAAGTCCAAATACATGGATTTCATAGAGAAAATTCC
ATTCGAGGTTAACTTCCACCTGATTGTATCT--------------
>chr6D_2045
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------------------------------------------TTTTT------TT-GAAAAGGAGGTTGACCTCCGG--C
CTCTGCATCAATCGATGCATGCAGCCATATTATTAAAAAG--GTAACATGGTCTTAAGTTCCAAGGAAGCTCATAAACTG
AGC--AAAATTTAAAAAAA---ATAGTCTATAAAGCGCCACAACCGGCGATAAAGCG--------------------CCA
CAACCGGCGATAAAGAACAGGTTACGATGCTTACACACCTAGCCTTAG--TAACTCGCCATCCAAATCGGCTGAAGATAG
CCCGTGCTACCATCTCCCGT-GGTTGCACCCAATAGCCAAGAGCTCCCTGAAGTCCGTATGAGTGAGTAACGACCACATA
TGGATCCAAGCTGTAGCTCTGTAGATAACCTGCAAAAAATTAGTGAAT-TTTGTCCCATTAAAAATCATATCGTTTTTAG
TGTTCCATATAGCCCGGAATAGTGCACATATCCCT--CCGATTATGCTTAGCTATGTGTATTTTCCACTTCATTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCATTGGGAG-ATGAACGTTAAAAGCTATATGAATTGGTCGGCATAACAATTTTGCA
AGTGGA--------------------------------------------------------------------------
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---------------------------------------------
>chr4B_2045
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------------------------------------------TTTTT------TTAGAAAAGGAGGTTGACCTCCGG--C
CTCTGCATCAATCGATGTATGCTACCATATTATTAAAAAA-CATAACAATGCCTTAAGTTTCAAGGAAGCTCGTAAACCG
AGC--AGAGA--GAAAAAA---TAAATCTGTAAA--------------------ACG--------------------CCA
CACCCGGCGATAAAGAACAGGCTACGATGCCTACACACCTAGCCTATTATTAGCTCGCTATCCAAATCGGCTGAAGATAG
CCCTTTCTACCGTCTCCCAACAGTTGCACCCAGTATCCAAAAGCTCCCTGAAGTCCGCATGAGTGAGTAACGACCATATA
CGGATCCAAGTTGAAGCTCTGTAGATAACTTGCAAAAAAATAGTGAAT-TTTGTCCCATTAAAAATCATATCATTTCTGG
TGTTCCATATAGCCCAGAATAGTGCACATATCCCCATCCGAATATGTTTAGTTATGTGTATG-TTCACTCCATTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCGTTAGGGG-ATGAACATTAAAAGCTATATGAATTGATTGCCATAACAACTTTGCA
AGCAGACAGTGGAGAAAGAGGTGTTTAATCGATTCATTCTGATCACAAAAACAACACCTGGAGTTACCAACCAAATTCCT
TTTCAGCAAATTATCTTTGATCAAAATAACTCCTTTGTGGACGAACCACATAAAGATTTTGATGCGGAAGCGGAACTTTA
ATCTTCCATATGTGCAAAGACCTCGATAATGGCCCGGAATCAATTAAGTCCAAATACATGGATTTCACAGTGAAAATTCC
ATTTTTGGTTAACTTCCAACTAATTGTATCTGC------------
>chr4A_2045
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------------------------------------------TTTTT------TT-GAAAAGGAGGAAAACCTCCGG--C
CTCTGCACCGATAGATGCATACGATCATATTATTTAAAAG-CACAAGAAGGTCTTAAGTTCCAATGCTGCTCATAGTCTA
AGC--AAATA--GAAAAAA---TAAGTCTGCAACGTGCCACACTCGGCGAAAATGCT--------------------CCA
CATCCGGCAATCAAGAATAGACTACGATGCCTACACACCTAGCCTATTATTAAGTCACCATCAAAATCGGCTGAAGATAG
CCCGTGCTACCGTCTCCCAGCGGTTGCACCCAATATCCAAAGGCTCCCTGAAATCCGCATGAGTGAGTAACGACCGCATA
CGGATCCAAGCTGTAGCTCTGTAGATGACCTGCAAAAAGTTAGTGAAG-TTTGTCCCGTTAAAAATCATATCATTTCTCG
TGTTCCATATAGCCCATAATAGTGCACATATCCCTATCCGAATATGTTTAGCTATATATTTG-TCCACTCCAGTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCGTTGGGGG-ATGAATGTTAAAAGCTATATGTATTGATCGCCCTAAAAATTGTGCA
AGCGGACATCGGAGAAAGAGGTGTTTGATCGATTCATTTTGGTCACAAGAACAACGTCTGGAGTTACCAATCCAATTCCT
TTTTAGCAAATTATCTTTGGTCAAAATAACTCCCTTGTGCATGAACCACATAAAGATTTTGATGCG-AAGCGGAACTTTA
ATCTTCCATGTGTGTAAAGACCTCGACAATGGACCGGAATCAATTAAGTCTAAATACATGGATTTCACAGAGAAAATTCC
ATTTGAGGTTAACTTCGAACTGATAGTATCTGC------------
>chr2A_2046
TTATTT--------------------------------------------------------------------------
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-----------------------------------------------------TTGGAAAAGGAGGTTGACCTCCGGCGC
CTCTGCATCAGTCGATGCATGCAGCCATATTATTAAAAAGT-GTAACAAGGTCTTAAGTTCCAAGGAAGCTCATAAACCG
AGC--AAGAATTAAAAAAA---TAAATCTGTAAAACACCACATCCGGCGATAATGCGCCACGTCCGGTGATAACGCCACA
CATCCGGCGATAAAGAACATGCTACGATGCCTATACACCTAGCCTATTATCAATTCACCATCCAAATCAACTGAAGATAT
CCCGTGCTACCGTCTCCCAGCGGTTGCACGCAATAGCCAAAATCTCCCTGTAGTCCGCATGAGTGAGTAACGACCACATA
CGGATCCAAGCTGTAGCTCTGTAGTTAACCTGCAAAAAATTAGTGAAT-TTTGTCCCATTAAAAATCATATCATTTCTAG
TGTTCCATATATCTCAAAATAGTGCACATATCCCTATCTGAATATGTTTAGCTATGTGTATG-TCCACTTCATTAATCCA
TGTCCCAAATAACGTGTTTATGCTCATTGGGGG-ATGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTACA
AGTGGACACTCGAGAAAAAGGTGTTTAATCGACTCATTTTGATCACAAAAACAACACATGGAGTTACCAACCCAATTCCT
TTTCATCAAATTATTTTTGGTCAAAATGACTCCTTTGTGGACGAACCACATAAAGATTTTGATGCG-ACGCGGAATATTA
ATCTTCCATATGTTCAAAGACCTCGACAATGGCCCGAAATTAATTAAGTTCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGTGGTTAACTTCCAGCTAATTGTATCTGC------------
>chr6D_2050
--------------------------------------------------------------------------------
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----------------------------------------------------TTTAGAAAAGGAGGTTGACCTCCGG--C
CTCTGCATCAATCGATGCATGCAGCCATATTATTAAAAAG-CGTAACAAGGTCTTAGGTTCCAAGAAAGCTCATAAACCG
AGT--CAAGA--GAAAAAA---TAAATCTGTAAAGTGCCACATCCAGCAATAACGCG--------------------CCA
CATCCGGCGATAAAGAACAGACTACGATGCCTACACACCTAGTCTATTATTAGCTCGCCATCCAAATCGGCTGAAGATAG
CCCGTGCAACCGTCTCCTAGCGGTTGCATCCAATATCCAAAAGCTCCCTAAAATCTGCATGAGTGAGTAACGACCACATA
CGGATCCAAGCTGTAGCTCTGTAGATAACCTGCAAAAAATTAGTGAAG-TTTATCCCATTAAAGATCATATCATTTCTAG
TGTTCCATATAGCCCAGAAAAGTGCACATATCCCTATCCGAATATGTTTAGCTACTTGTATG-TCCACTCCATTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCGTGGGGGG-ATGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGCA
AGTGGACACTGGAGAAAGAGGTGTTTAATCGATTCATTTTGATCACAAAAACAGCACCTG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>chr6D_2054
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--------------------------------------------------------GAAAAGGAGGAAAACCTCCTG--C
CTCTGCACCA-TAGATGCATACGGCCATATTATTAAGAAG-CACAAGAAGGTCTTAAGTTCCAATGCTGCTCATAGTCCG
AGC--AAATA--GAAAAAAAATTAAGTCTGTAGGGTGCCACACTCGGCGAA--------------------AACGCTCCA
CATTCGGCAATCAAGAATAGACTACGATGCCTACACACCTAGCCTATTATTAAGTCGCCATCCAAATTGGCTGAAGATAG
CCCATGCTACCGTCTCCCAGCGGTTGCACCCAATATCCAAAGGCTCCCTGAAATCTGCATGAGTGAGTAACGACAACATA
CGGATCCAAGTTGTAGCTCTATAGATGA-CTGCAAAAAGTTAGTGAAG-TTTGTCCCATTAAAAATCATATCATTTCTCG
TGTTCCATATAGCCCATAAGAGTGCACATGTCCCTATCCGAATATGTTTAGCTATATATTTG-TCCACTCCAGTAAGCCA
CGTCCCAAATAACGTGTTTATGCTCGTT-GGGG-ATGAAAGTTAAAAGCTATATGTATTGATCGCCATAACAATTGTGCA
AGCGGACATCGGAGAAAGAGGTGTTTAATCGATTCATTTTGGTCGCAAAAACAACATCTGGAGTTACCAATCCAACTCCT
TTTTAGCAAATTATCTTTGATCAAAATAACTCCCTTGTGCACGAACCACATAAAGATTTTGATGCG-AAGCGGAACTTTA
ATCTTCCATATGTGTAAAGACCTCGACAATGGACCGGAATCAATTAAGTCCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGAGGTTAACTTCCAACTGATAGTATCTGC------------
>chr5D_2056
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----------------------------------------------------------AATGGAGGATGACCTCCGG--C
CTCTGCATCAATCGATGCATCCAGCCATATTATTAAAAAA-CTTTTCAAAGTCTTATGTTCCAAGTAA-CTCATGAGCCG
TGTAAAGAGA--AAAAAAT---TAAAACTGTAAAGCGCCACATCCGGCTGA--------------------AACGCACCA
CATCCGGCCATAAAGAACAGACTACGATGCCTACACACCTAGCCTATTATTAGCTCGCCATCCGAACCGGCTGAAGATAG
CCCGTGCTGCCGTCTTCCAGCGGTTGCACCCAATATTCAAAAGCTCTCTGAAGTCAGCATGAGTGAGTAACGACCACATA
CGGATCCAAGTTGTAGCTCTGTAAATAACCTGCAAAATATTAGTGAAG-TTTTTCCCATCAAATGTCATATCATTTCTAG
TGTTCCATATAGCCCAGAATAATGCACATATCCCTATCTGAATATGTTTAGCTATGTGTGTG-TCCACTCCATTAAGCCA
CGTCCCAAATAACATGTGTACGCTTATTGAGGG-ATGAACGTTAAAAGCTATATGAATTAATCGCCATAACAATTTTGCA
AGTGGACAATGGAGAAAGAGGTGTTTAATCGATTCATTTTGACCACAAAAACAACACCTTGGGTTACCAACCCAATTCCT
TTTCACCAAGTTGTCTTTGGTCAAAATAACCCCTTTATGGATGAACCACATAAAGATTTTAATGCG-AAGCGGAACTTTA
ATCTTTCAAATGTGCAAAGACATCGACAATGGCCCAGAGTCAATTAAGTCCAAATACATGGATTTTACTGAGAACATTCC
ATTCGTGGTTAACTTCCAACTAATTGTATCTGTCTG---------
>chr5D_2057
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-----------------------------------------------------------AAGGAGGATTACCTCCGG--C
CTTTGCACAGATCGATGCATACGGCCATATTATTAAAAAAGCACAAAAAGTTCTTAAAATCCAAAGTTGCCCATAGTCCG
AGC--AAAGA--GAAAAAAA--TAAGTATATAACGTGCCACACTCGGCGAA--------------------AACGCTCCA
CATCCAGCAATAAAGAATAGACTACGATGCCTACACACCTAGCCTATTATTAAGTCGCCATCCAAATCGGTTGAAGATAG
CCCGTGCTACCGTCTCCCAGCGGTTGCACCCAATATCCAAAGGCTCCCTGAAATCCGCATGAGTGAGTAACGACCATATA
CGGATCCAAGTTGTAGCTTTGTAGATGACCTGCAAAAAGTTAGTGAAG-TTTGTCCCATTAAATATCATATCATTTCTCG
TGTTCCATATAGCCCAAAAAAGTGCACATATCCCTATCCGAATATGTTTAGCTATATATTTG-TCCACTCCACTAAGCCA
CGTCCCAAATAACGTGTTTATACTCGTT-GGGGGATGAATGTTAAAAGCTATATGTATTGATCGCCATAACAATTATGCA
AGCGGACATCGGAGAAAGAGGTGTTTAATCGATTCATTTTGGCCACAAAAACAACATCTGGAGTTACCAATCCAATTTCT
TTTTAGCAAATTATCTTTGGTCAAAATAACTCCCTTGTGCACGAACTACATAAAGATTTTGATGCG-AAGCGGAACTTTA
ATCTTCCACATGTGTAAAGACCTCGACAATGGACCGGAATCAATTAAGTCCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGAGGTTAACTTCCAACTGATTGTATCTGACTG---------
>chr5B_2185
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--------------------------------------------------TAAAGTG--------------------CCA
CATCCGGCGATAAAGAACAGACTACGATGCCTACACACCTAGTCTATTATTAGCTCACCATCCAAATCGGCTGAAGATAG
CCCGTGCGACCGTCTCCCAACGGTTGCATCCAATATCCAAAAGCTCCCTGAAATCCGCATGAGTGAGTAACGACCACATA
CGGATCCAAGTTGTAGCTCCGTAGATAACCTGCAAAAAATTAGTGAAG-TTTATCCCATTAAAGATCATATCATTTCTAG
TGTTCCATATAGCCCAGAAAAGTGCACATATCCCTATCCGAACATGTTTAGCTACTTGTATG-TCCACTCCATTAAGCCG
CATCCCAAATAATGTGTTTATACTCA-TGGGGG-ATGAACGTTAAAAGCTATATGAATTGATCGCCATAACAATTTTGCC
AGTGGACACTGGAGAAAGAGGTGTTTAAACGATTCGTTTTGATCACAAAAACAACACCTGGAGCTACCAACCCAATTCCT
TTTTAGCAAATTATCTTTGGTCAAAATAACTTCTTTGTGGACGAACCACATAAAGATTTTGATGCG-AAGCGGAACTTTA
ATCTTTCATATGTGCAAAGACCTCGACAATGGCCCGGAATCAATTAAGTTCAAATACATGGATTTCACAGAGAAAATTCC
ATTCGTGGTTAGCTTCCAACTAATGGTATCTGC------------
>SNPs
------S-S----SS-S---------SS-----------SS------SS---S--------------S--S----S----
S-------------------------S-------S--S-----S------------S------S----------------
----------S------S-------S--------S-S-------S----S-S----SS------S---------------
---------SSS------------------------S---S---S----------------------SS-----SS----
----S---S-S-----SS--S-S------------SS-SSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
------------------S----------------------S----------S--S---S--S-SSSS---S------SS
-------S-----SS---------------S----------S------------------SS--------S-----S---
--------S------S-----S---------S--S----------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------
---S---------------------------SS---S--S-----------------S------S---------S-----
S-------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
--------------------------------------------------------------------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S------
--S-----------------------------------S--------S------S----------S----------S---
----------------------------S-SSS-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
--------------S-----------------------------------------------------------------
----------------------------------------------------------------------S---------
-------------------------------------------------S----------------S-------------
--------------------------------------------S---------------S-------------------
S----------------------------------------------------S--S-----------------------
--------------------------------------------------------------------------------
------S---------------------------------SS---------S----------------------------
----S--------------------------------------------SS-----------------------------
-----S----------------------------------------S---------------------------------
-----------------------------S--------------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
----S----------------S-----------------------S----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------S--S----
-------S------------------------------------------------------------------------
----------S----------------------SSSSSSSSSSSS
>forward_664
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----CCTGTTTGGGAACGTCCTCA--------------------------------------------------------
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>reverse_1805
--------------------------------------------------------------------------------
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--------------------------------------------GCAGATCTGGGACGGACATG----------------
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---------------------------------------------
>forward_1145
--------------------------------------------------------------------------------
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-----GTGCTGATCCTGGTCTGGTC-------------------------------------------------------
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---------------------------------------------
>reverse_2166
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----TATCAATCGATGCATGCAGCC------------------------------------------------------
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---------------------------------------------
