>input_sequence_66554
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--------------------------------------------ATGGCCAAGGAGTACTCGGAGAGTGGTGGTCTGGTG
GGGCTGATGCCGTTCGTGGCCAAGACGTACAGCATGGTGGAGGACCCGGCGACTGACGACGTGATCGCATGGGGAAGAGG
CGGCAACAGCTTCATCGTGGCCGACCTCTTGGTCTTCTCGGGCACGCTGCTTCCCGCGCACTTCAAGCACTGCAAATTCT
CTAACTTCGTTCGGCAGCTCAATACCTACGTATGTGCACGTAATACTGCAACTGCTACCACTTGTCTAACTGTGGCACTA
CCACTCTGCTGTAGTTAATCTGTACCACTCTCCAGGGATTCCAGAAGGTGGATCCGAATAGATGGGAGTACGCCCATGTG
TTGTTCCTTCGGGGGCATGCGCACCTCCTGCACCAGATTGTCCGGCTCACCAACAACAACAGCAAGCGCAAGCCCAAGGA
CGACGACGACCACAACAACACGATGGTGGCCACTGAGGTGATCCTGCTAAAGCAGGAGCAGAAGGCCATCAAGGACCGCT
TGGCGGCGATGTCGCGCCAGGTGCGGGAGACGGAGCGCCGGCGGAAGCAGATGCTCGACGTCCTCCTGAAGGTCGTTCGA
GACCCCGAGGTGCTGCGCCCTCTCCTAGGCAACAACGAGAGCGAGGAGAAAGGCGCGGAGGTCAAGAGGCTGCGACTGCA
GCTTCTGGACAGGGAAGGCCAGGTGGGCAGCACCAACAGCATGTCCGTCGACGGGCCGCTCTACGACACCACCCAGGACG
AAGTCTTTGTGCCGGAAACCGGCATCGACTTCACTGGCTTCTACACTGGAGGCGGCTTCGTGGCGGACGGCAGCGGCGAG
GACCCGTCGTACGCGTTCCCCATGGACAACGACTACTAA-----------------------------------------
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-----------------------------------------
>chr5A_1_TraesCS5A01G524000
CCGGTAAGCTAACCGCCTCGACCCCCGCCATTCTCATCTGAAATATCTTTGCGTTCTCTTCAGAAGCGAGCTAGCAGACA
TAACCGCCCCTTGAGGAGTAGACCCGCGTAGGGATTTAGCCGTATTTAGCACTGACTATTCGCGCCCCCTGTCCGCACGT
TGATATGTTTTCTTCCATTGCTAAAGAAATGGAAAGTTGATAGTTCAACGTTGCACCTGCCGCATGTCATTATCACCCAA
CAATCAAATTCTCCAACCTTCCATTCCACGAAAAGAAATGCATGACCGCCATTTAGAGAGAGAAGCTAGCAGGGAGCAGT
TGCACTACTTATTCTAATGTTCTATGATTAATTAGCTAGCCAAATAACGTTGCCAAATAATATCCACACAACTTTTAACC
ATTTCAGTTATATTTCAATCGAATTCAGGAAAACATGCATGTTGTACATGTTTCAACAATTTTATATTACAAATTCTGAA
ATACTAAAAATCTTATGTTAGATTTTTAACATTGCAAATCGAAAGTTTTTTTTATGGCAAATTACGTGTGCGAACATGGC
AGTTTCCTTCAGCAAGCATTGCAAATCTTGAAAAAAAAGTAATTTGGTATGCTTCCTGAAGGAAATTGCGGGGCTCAGGA
CACGTAATTTGCCATAAAAAATGTTTGATTTGCCATGTTTAAAAATCTGACATTAGATTGGTATCGGGGTCTTGAAAAAT
AGCTTCAAGGTGTATCTATGATTGGTCTTGTTTTTGAAGGTCTTGTAGCTGCATGCAATTAC-TTTTACTTGGTACGTCG
CGTCTCATGTGGCGACGTCTGGCACCTCTATAATATTTATAGGCTTGATAGGCACGAGACTCCTTCGTTCTCCCATTCAT
CATTCCATATCTTGAGCTCCCACACATTCCTCACATCCTTCACTA---GCAAAGAGAGAGGAAAAGGCTAAAGTATCTTA
TATATTGTTGTCGTGTGCTCGTGGTGATGAGCGGCGGTGGTGGCATGGCCAAGGAGTACTCGGAGAGTGGTGGTCTGGTG
GGGCTGATGCCGTTCGTGGCCAAGACGTACAGCATGGTGGAGGACCCGGCGACTGACGACGTGATCGCATGGGGAAGAGG
CGGCAACAGCTTCATCGTGGCCGACCTCTTGGTCTTCTCGGGCACGCTGCTTCCCGCGCACTTCAAGCACTGCAAATTCT
CTAACTTCGTTCGGCAGCTCAATACCTACGTATGTGCACGTAATACTGCAACTGCTACCACTTGTCTAACTGTGGCACTA
CCACTCTGCTGTAGTTAATCTGTACCACTCTCCAGGGATTCCAGAAGGTGGATCCGAATAGATGGGAGTACGCCCATGTG
TTGTTCCTTCGGGGGCATGCGCACCTCCTGCACCAGATTGTCCGGCTCACCAACAACAACAGCAAGCGCAAGCCCAAGGA
CGACGACGACCACAACAACACGATGGTGGCCACTGAGGTGATCCTGCTAAAGCAGGAGCAGAAGGCCATCAAGGACCGCT
TGGCGGCGATGTCGCGCCAGGTGCGGGAGACGGAGCGCCGGCGGAAGCAGATGCTCGACGTCCTCCTGAAGGTCGTTCGA
GACCCCGAGGTGCTGCGCCCTCTCCTAGGCAACAACGAGAGCGAGGAGAAAGGCGCGGAGGTCAAGAGGCTGCGACTGCA
GCTTCTGGACAGGGAAGGCCAGGTGGGCAGCACCAACAGCATGTCCGTCGACGGGCCGCTCTACGACACCACCCAGGACG
AAGTCTTTGTGCCGGAAACCGGCATCGACTTCACTGGCTTCTACACTGGAGGCGGCTTCGTGGCGGACGGCAGCGGCGAG
GACCCGTCGTACGCGTTCCCCATGGACAACGACTACTAACTGCGTGCTTTTGTTGATCTAGCTACCTGTATAGGTCAAGT
TCCATATTCTCCTCCTTTGTCCTA----TGTACCTTTTTCGTATATATGGCTGAATCTCCGGACCGCTGTGAAATCAACT
TCAATTGGTATCCCAGTCTATGCTTTGAATAAAACTCAATATATCCAGTCAGCAGTCCAAGTGTTAATTTGTGGAGTGCT
AGATCAGGAACATTGCTGGATTAAAAAGAACAGTATTTCAAAGAAAACATGAATTGCAAGCCACACTACTGGAGGTAGAT
TTCAAAGTCAAATGTCACTAAGAGT--CATTCATCTACTCTTGATAAAAGGAATAAGTTCAGCTTTAGAATACCAAGCGC
TTAATTTTACCTTCCAATAGTATTTTCCACATAGAAACCATATCCCTTGACAGATTCTGCGGGTTTATGCATTTCAGCGA
GCTTCCTTCCTAGAGCTGACTGACAATAAGCTGTTTGTTAATGATGAATGGTTTAAATAAAAGCTTGCAACAAAAGGTAC
AAGTTACCTTTTTCTTTGAATGAAAGGGGTTTCAGGACAAGGTTACCTGGCGGAAGCAGGTCGAATCCTTTATACAAGAA
GGCAACATTGGAATTGAGGTAAATGATGATATAGGCCATTACTTCCAAACACAGAAAGGATTGAGACAAGGAGATCCGAT
GTCTCCTATCTTTTTTAATGTTGTCGCTGATATGTTGACCGTTCTTATCAATAGAGTGAAAGAAAACAGCCATGTAGGGG
GTCTTATCCCACATATGGTGGAGGGTGGGGTATCCATTCTACAATA----------------------------------
--------------------------------TGCAGATGACACCATTATCTTCATGGAACATGATCTAGCTAAGGCAAG
GAATATGAAGTTAAATTTGTGTCTTTTT----------------------------------------------------
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------------------------------------------------------------------------------GA
ACAAATGTCCAGGCTCAAAATTAATTTCAACAAAAGTGAATTATTCCGTTTTGGGCGCACCAAAGATGAACATGATAGTT
ATAAACAGTTGTTTGGTTGCGAGCTAGGTTCTTTACCATTT
>chr4D_656
AAAAATATATTCA-------------------------------------------------------------------
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---------------------------ATTTGCCATGTTTAAAAATCTGACATTAGATTCGTATCGGGGTCTTGAAAATT
AGCTTCAAGGTGTATCTATGATTGGTCTTGTTTTTTAAGGTCTTGTAGCTGCATGCAATTACTTTTTACTTGGTACCTCG
CGTCTGACGTGGCGACGTCTAACACCTCTATAGTATTTATAGGCATGATAGGCACGAGACTCCTTCATTCTCCCATTCAT
CATTCCATATTCTGAGCTCCCACACATTCCTCACCCCCTTCACTATTAGCAAAGAGAGAGGAAAAGGCTAAAGTATTTTA
TATATTGTTGTAGTGTGCTCGTGATGATGAGCAACGGTTGTGGCATGGCCAAGGAGTACCCGGGGAGTGGTGGTCCGGCG
GGGGTGATGCCGTTCGTGGCCAAGACTTACGGGATGGTGGAGGACCCGGCGACTGACGACGTGATCGCATGGGGAAGAGG
CGGCAACGGCTTCGTCGTGGCCGACCGCTTGGTCTTCTCGGGCACGCTGCTTCCCGCGCACTTCAAGCACTGCAAATTCT
CTAACTTCGTTCCGCAGCTCAATACCTACGTATGTGCACGTAATACCGCAACTGCTACCACTTGTCTAACTGTGGCACTA
CCACTCTACTGTAGTTAATATGTACCACTCCCCAGGGATTCCGGAAGGTGGATCAGAATAGATGGGAGTACGCCCACGTG
TTGTTCCTGCGGGGGCATGCGCACCTCCTGCACCAGA-------------------------------------------
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--------GGTGTTGTGCCCTCTCCTAGGCAACAACGAGAGCGAGGAAAAAGGCACGGAGGTCAAGAGGCTGCGACTGCA
GCTTCTGGACAGGGAAGGCCAGGTGGGCAGCAGCAACAGCATGTCCGTCGACGGGCCGCTCTACGACATCACCCAGGACG
AAGTCTTTGTGCCGGAAACCGGCATCGACTTCACTGACTTCTACACTGGAGGCGGCTTCGTGGCGGCCGACAGCGGCGAG
GACCCGTCGTACGCGTTCCCCATGGACAACGACTACTAACTGCGTGCTTTTGTTGATCTA----CCTGTATAGGTCAAGT
TCCATATTCTCCTCCTTTCTCCTATATATGTACCTTTCTCGTATATATTGCTGTATCTCCGAACCGTTCTGATATCAACT
TTAACTTGTATCCCAGTCTATGCTTTGAGCCAAACTCA----ATCCAGTCAGCAGTCCAGATGTTAATTTTTGGAGTACT
ACATCAGGAACATTGGTGGATTAAAAAGAACAATATTTCAAAGAAAGCATGAATTGCAAGCCACACTACTGGAGGTGGAC
TTCAAAGTCAAATGTCACT--GAGA--CACTCATCTCCTCTTGATAAAAGGGATAAGTTCAGTTTTAGAATACCGAACGC
TTAATTTTACCTTCCAATAGTATTT-------------------CCTTGTCAGATTTTGCAGCTTTATGCATTTCAGCGA
GCTTTCTCCCTAGAGCTGACTAACAATAAGCTGTTTGTTAACGATGAATGATTTAAATAAAAGCCTGCAACAAAAGGTAC
AAGTTACCTTTTTCTTTGAACGAAAGGGGTTTCGGGACAAGGTTACCTGGTCTTCCCTAGAACGACCAAATTGAATATAC
TCCATTATGATAAAAGAACCACCAGTTGGTAACGAACCAACCTGTCATTAAAGGGGCACAGAGTAAGAAATACAGTGAAG
AAGAATGGCGGCTGTAGGCAGGTGCAGGTAGTGAAAAATAAAGATAGTGCACAATCTCTGTGCTAAGATGCTAACTATTA
GTTGCTAGATGAGAAGCAACCAACGACCTTCAGCTGAATATAATTGGAATAGGAATATGTATACCGATCAAATATCAGAA
CAAAGTATCTAGTTCTGCAATGTATGGTGTAGTGCAGTTTCAGTCATGAACGTCAGGTATGATTATCTTGTAGTACTGTT
TTATGCATCACGCAACTTATAGATGCTCTCTGAGAGTCATTCTTGTACTCTTGATAAAAGGGATAAGCTCGGCTTTAGAA
TACCAAGCGCTTAATTGTACCTTCTAATAGTATTTTCCACATAGAAACCATATCCCTTGTCAGATTTTGCAGCTTTATGC
ATTTCAGCTAGCTTCCTCCCTAGAGCTGACTGACAATAAGTTGTTTGTTAATGATGAATGATTTAAATAAAAGCTTGCGA
AAAAAGGTACAAGTTACATTTTTCTTTGAATGAAAGGTGTTTCAGGACAAGGTTACGTGG--------------------
-----------------------------------------
>chr5A_1905
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--------------------------------------------------------------------TATAAGTCAAGT
TCCATATGTTCCTCCTTTCTCGTATGTA----CCTTTTTC--ATATATAGCTGAATCTCCGAACCGCTGTGATATCAACT
TCAACTGGTATCCCAGTCTATGCTTCGAGTAAAACTCA----ATCCAGTCAGCAGTCCAAGTGTTGATTTGTGGAGTGCT
ACATCAGGAAAATTGGT------------------------AGCAAACATGAGTTGCAAGCCACACTACTGGAGGTGGAC
TTCAAAGTTAAATGTCACT--GAGA--CATTCATCTCGTCTTGATAAAAGGGACAAGTTCAGTTTTAGAATAGCGAGCGC
TTAATTTTACCTTCCAATAGTATTTTCAACGTAGAAACCATAGCCCTTGTCAGATTTTGCAGCTTTATGCATTTCAGCGA
GCTTTCTCCCTAGAGCTGACTGACAATAAGCTGTTTGTTAACGGTGAATGATTTAAATAAAAGCTTGCAACAAAAGGTAC
AAGTTACCTTTTTCTTTGAATGAAAGGGGTTTCGGGACAAGGTTACCTGG------------------------------
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>chr4D_1909
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------------------------------------------------------------------------GGTCAAGT
TCCAGATTCTCCTCCTTTCTCCTATGTA----CCCTTTTC--ATATATGGCTGAATCTCCGAACCGCTGCGATATCAACT
TCAACTGGTATCCCAGTCTATGCTTCGAGTAAAACTCA----ATCCAGTCAGCAGTCCAAGTGTTAATTTGCGGAGTGCT
ACATCAGGAAAATTGGTGGATTAAAAAGAACAGTATTTCAAAGCAAACATGAGTTGCAAGCCACACGACTGGAGGTGGAC
TTCAAAGTCAAATGTCACT--GAGA--CTTCCATCTACTCGTGATAAAAGGGATAAGTTCAGTTTCAGAATACCGAGTGC
TTAA-TTTACCTTCCAATAGTATTTTCAACATAGAAGCCATAGCCCTTGTCAGATTTTGCAGATTTATGCATTTCAGCAA
GCTTTCTCCCTAGAGCTGACTGAAAATAAGCTGTTTGTTAACATGAATA-ATTTAAATATAACCTTGCATCAAAAGGTAC
AAGTTACCTTTTTCTTTGAACGAAAGGGGTTTCGGGACAAGGTTACCTGG------------------------------
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>chr4B_1909
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------------------------------------------------------------------------GGTTAAGT
TCCAGATTCTCCTCCTTTCTCCTATGTA----CCTTTTTC--ATATATGGCTGAATCTCCGAACCGCTGCGATATCAACT
TCAACTGGTATCCCAGTCTATGCTTCGAGTAAAACTCA----ATCCAGTCAGCAGTCCAAGTGTTAATTTGCGGAGTGCT
ACATCAGGAAAGTTGGTGGATTAAAAAGAACTGTATTTCAAAGCAAACATGGGTTGCAAGCCACACCACTCGAGATGGAC
TTCAAAGTCAAATGTCACT--GAGAGACAGTCATCTACTCTTAA-AAAAGGGATAAGTT-AGTTTTAGAATAGCGAGCGC
TTAATTTTACCTTCCAATAGTATTTTCGACGTAGAAACCATATCCCTTGTCAGATTTTGCAGCTTTATGCATTTCGGCCA
GCTTTCTTCCTAGAGCTGACTGACAATAAGTTGTTTGTTAATGATGCATGATTTACATAAAAGCTTGCAACAAAAGGTAC
AAGTTACCTTTTTCTTTGAACGAAAGGGGTTTCGGGACAAGGTTACCTGG------------------------------
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-----------------------------------------
>SNPs
SSSSSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S------------------S-
-----------------------------------S----------------------------------------S---
-----S-S------------SS----------S-----------S---------------------S-------------
----------SS----------------------SS----------------------------------------S---
-----------S-----------S--------SS----S--------------------S---S-----------S--S-
---S----------------------S---S-S-----------------------------------------------
-------S-----S------------S-----------------------------------------------------
------------S---------------------------------S---------------------------------
-------S-----------S----------S-----------S-----------S---------------------S---
--------S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS----S--S-------------------------------S------S-------------------------
--------------------------------S-----------------------------------S-----------
------------------------------------S-----------------------------S--S----------
------------------------------------------------------------SSSS----------------
------------------S------------------------------------------S----------S-------
----S-----------------------S---------SSSS--------------------------------------
-S-------------S------------------------------------------------------------S--S
-------------------SS---S--------------------------S----------S-----------S-----
---------------------------S---------------------S------S---S-S-----------------
----S---------------------------------------------S-----------------------------
---------------------------------S----------------SSSSSS-SS-SSSS-S-SSS-SS-SS-S-S
SS--SS--SSS--SS--SSS-SSS-S--S--SS-SS-SSSS--SS--SSS-SS-SSSSS-SS-SS-S--SS-S-SSSS-S
SSSSSSSSSSSS-S-SSSSSSSSS-SSSS-SSSSSSS-SSSSSS-SS-SS-S-SSS-SSSS-SS--S-SS-SSSSSSSSS
--SSSSSSSSSSSS-SSSSSS-SS-SSSSSS-S-SSSSSSSS-S-S----------------------------------
-------------------------------------S-SSSSS---S-S-S---S-S-SS--S----S-SSSSSSSSSS
SS--SSSSSSSSS--S--S-SSS-SS-S----------------------------------------------------
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-S---S--S--S-S-SS-SS--SS---S--SS----SSSS--SSSSSSSSSSSSS--SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_565
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-----------------------------------------------------------------GTGTGCGAACATGGC
AGTTT---------------------------------------------------------------------------
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>reverse_1403
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------------------------------------------CGGCTCACCAACAACAACAG------------------
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>forward_915
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---------------GCTCCCACACATTCCTCACA---------------------------------------------
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>reverse_3125
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----ACAGTTGTTTGGTTGCGAGC-----------------
