>input_sequence_66548
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ATGGCCGAGG---------------CGGCGGCGAGCACAAGGAAACTGTACGGCTACGAGCTGTCGTCCAACTCGGTGCG
CATCGCGGCGCTGCTCAACGAGAAGGGGCTCGACTACGAGCTCGTCGTCGTCGACGACACCAAGGCGCCGGAGTTCCTCG
CCATCAACGTACGTACGCCCGCCCACGCACTCCCCTGCTACTGCTGCTACACTGCACTGATCATCAGCCGATGCGGATCG
TTTACTAATT----------------------------------------------------------------------
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----------TTTACTGTGTTTGCGTGAGTCGTGCAGCCCTTGGGTCAGGTCCCGGCGTTCCAGGACGGCGACGACATCC
TCTTCGGTACGCCCAAG------AAATTCAGACCTTCAGACTCGCCGGAGTTAATTGTCAACATTTTGGGCTAAT-----
--------------------------CAACTGCACGAATTTGCTCTGATTTG----GGGATCGCGCGCAGAGTCTCGCGC
CATAAGTAGGTACATCGCGGCCAAGTACCGGTCAACGGGCACGGACCTGCTGCCGGCGGCGCCGTCGGCGAAGCTGGAGG
TGTGGCTAGAGGTGGAGTCGCACCACTTCTACCCGGCCGTGGCGGACCTGGTGTACGAGCTCCGCGTCAGGCCCCGGCTG
CCGGGCGGCGCGCCGCCCGACCCGGCCGTCGTGGACGGGCTCGCCCGCAAGGTGGCCGACGTGCTCGACGTCTACGACGC
GCACCTCGGCGCGGGGAACAGGTACCTCGCCGGCGATCAGTTCACGCTCGCCGACGTGAACCACATGGCGCAGCTGTTCG
TCATGAGCCTGACGCCCCGGGCGGCGGAGCTGGTCGCGGCCAGGCCGCACGTGCAGGCGTGGTGGGACGAGATATCCGCC
CGCCCCGCCTGGAAGAAGACCGTCGCCGCGCTCCCGCTCCCGCCGGCTTGA-----------------------------
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>chr3A_1_TraesCS3A01G452800
TGCCGAAATGCCGAGGGAACTTGAGCACGCAGTCGAGCAAGCGGGATCATGTGTGTGTTCTACGTGCACACAACATCGTG
CACCTCATGTCGG-TCATCGTTGTGACGGAGCTCCCTGGCACGCGGGTCCGTCGCGTCGACCTGGAAGCTCGCGTCGCGC
TGCTCTACCATTTCCTGAATGGGCAAACACGGTTCCGCCAAGTCGACGTGAGCGCTGGTCTACCATTTCCTGAACGGGCA
AACACCATTCCGCCAAGTCGATCGTGAGCGTGGCCA-CCTCCACTCCGTGCACGCCATCGCGTGCCGCCCTCCCAGCTCC
CGTTCCTTTT-TGACGAGTGACGACTCGCCGCGCACCGATGACATTGTGCTCTACATGAAGGGCACCTCCATAGATTCCC
CGCGTGGGCCATGCGAACCGG-AAACGCCCGCACCCGACGCCCTTCATCTGCGCTGCCCAGCCTCCTGCTTCTCCGTGCG
GCGCTGATTTCAGGAGAGATGATTGAGGATAGAAGATGGATATGACATGTGGGACAGAGATGTCAGTGAGAACAGACTAT
GATCTCAGGCGGGATTGATATTTTCCCGGTGCGCCAAATTAGTCTAGGGTTGATGTTGACCGAGATTAATGAGGTTAGGA
TACAGATTTTAGGGATTCAGAGGTGAAGGTTCAATTCCAACAAAGCCTACCAGTTTAAGGTTTAAAACAGACTTTACTCT
TCTTTAACCATGCACAGCCCCTCACAGCATTTGCCCGAATGTGGCTGGTGGACTGTCACGTTACGTCGGATGACTTTGAG
GAATTAACAATTTACCAAGCGCCACCTGCAGAGCAGGGCCAAACCGACCAGTTGATTAAGCGGCGT------GTTAGGTG
GGGTGCCATCCGTGACTG-------CTCTGCTCTGCCGGCCACCTACCGGGATCCCCTC--------CGCAGCTGCTCTC
CCGGTCTT----GGATCTCGCCGGTCGC--CACACCGTGCTTGCCAGCAGCAGAGA---------AGCGATCGAGGCAGC
ATGGCCGAGG---------------CGGCGGCGAGCACAAGGAAACTGTACGGCTACGAGCTGTCGTCCAACTCGGTGCG
CATCGCGGCGCTGCTCAACGAGAAGGGGCTCGACTACGAGCTCGTCGTCGTCGACGACACCAAGGCGCCGGAGTTCCTCG
CCATCAACGTACGTACGCCCGCCCACGCACTCCCCTGCTACTGCTGCTACACTGCACTGATCATCAGCCGATGCGGATCG
TTTACTAATT----------------------------------------------------------------------
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----------TTTACTGTGTTTGCGTGAGTCGTGCAGCCCTTGGGTCAGGTCCCGGCGTTCCAGGACGGCGACGACATCC
TCTTCGGTACGCCCAAG------AAATTCAGACCTTCAGACTCGCCGGAGTTAATTGTCAACATTTTGGGCTAAT-----
--------------------------CAACTGCACGAATTTGCTCTGATTTG----GGGATCGCGCGCAGAGTCTCGCGC
CATAAGTAGGTACATCGCGGCCAAGTACCGGTCAACGGGCACGGACCTGCTGCCGGCGGCGCCGTCGGCGAAGCTGGAGG
TGTGGCTAGAGGTGGAGTCGCACCACTTCTACCCGGCCGTGGCGGACCTGGTGTACGAGCTCCGCGTCAGGCCCCGGCTG
CCGGGCGGCGCGCCGCCCGACCCGGCCGTCGTGGACGGGCTCGCCCGCAAGGTGGCCGACGTGCTCGACGTCTACGACGC
GCACCTCGGCGCGGGGAACAGGTACCTCGCCGGCGATCAGTTCACGCTCGCCGACGTGAACCACATGGCGCAGCTGTTCG
TCATGAGCCTGACGCCCCGGGCGGCGGAGCTGGTCGCGGCCAGGCCGCACGTGCAGGCGTGGTGGGACGAGATATCCGCC
CGCCCCGCCTGGAAGAAGACCGTCGCCGCGCTCCCGCTCCCGCCGGCTTGAGGG-CGCCGGTGGCAGCCGC---------
--AGGATGTGGAATAGAGG-----TGGTTAATGTTTTTAGCTGGAGCAGATGATCGAATTCCCCAGGAATGTTGTTGATG
TGAGTGACATACC---------TGAACAGCTGACCATGGTCGGCTATGAA-GTTTATAACTCAAATCCTTTGTTTTGGCA
AGGCAAT-----GTGATGGCTTCTG----------------------------------CATTATCTCCGTAAAATTCAT
CTGGAATTCCTGTTGGCCAA--------------------------------------------------------TTTC
TAAAACAATTTTTGGAAACATTTCCTCTGCTTTCGTTGCTCTCCATGC---------------------------TGCAG
CTATCTTTTCAAGAATGGAGAAAGCAATTAGATACACCTAGTTGTCAAACCCATGCATTCTCACGGGCTACAAGTACTAC
AAATATTTTACAAACTTCATTTACTATGTTTTTGATAATTTCTGGAATACTAGATCTAGCTGGGTGGCAAAAGAAATTAT
GAAAAATAGAAATATGGAATTGTGGGGGCACAAGGATCTCACCGATGAAACTCGCAACAAACATAAAGATGATTTACCAA
GGGTTAGGCCCTCAAGGTCGGTTGAGCCTACTTGTATGAACACCAATACAAACTGTGGAGTTTTTCTTTTCATGACACAT
TCGAACCATGCATGACACTAGAAGCAACCAAACCACCGGTCTTCGAAGTACGACCAAATCAAACCACTAATTGCAAATAC
TTTGGTACAAGAAAGTCTTTCCAACAGACGGCGGCGTGGCGTCGGGCGACGGGCGGCATGGTGATGGTGCAGGTCGGCGG
GTGGCTGCCTCGTAGCAGCGCCTTAGCGCCACGTCTGGCGCTGCGGGTCGCGGGCGGCCCCTCTCGCCATGGATCTCTGG
TGGAGGGGCGGCGCGGCAGCAGTGGAGGTGGGCGGCCCCGTCCAGCCAGGCCCCTGCGGCTGGACAGCGGCGCTCGGCGC
GGGAGGGCCTCCCTGGTGACCTCTATGGCTGCGGCTCGGCGGTTATCTGTGCTCCCTCCTCCTCAGCAGCAGGCGGTGGC
>chr3B_9
--------TGCCGAGGGGACTTGAGCACGCCGTCTAGCAAGCGGGGTCATGTGTCTGTTGTACGTGCACACAGCATCGTG
CACGTCCTGCCGG-CCATCGTTGTGCAGGAGCTCGCCGGCACACGGGTCCGCCGCGTCGACCTGGAAGCTCGCGCCGCGC
TGCTCTACCATTTCCTGAT-------------------------------------------------------CGTGCA
AACACGGTTCCGCCAAGTCGA-CGTGAGCGCAGCCA-CCTCCACACCGTGCACGCCATCGCGTGCCGTCCTCCTAGCTCA
CGTTCCTCCTCTGACGAGTGACGACTCGCCGCGCACCGGCGACATCGTGCTCTGCATGAAGGGCACCTCCATAGATTCCC
CGCGTGGGCCATGCGAACCGGAAAACGCCCGCACCCGACGCCCTTCATCTGCAATGCCCAGCCTCTTGCTTCTCGGCGCC
GTGCTGATTTCAGAAGAGAGGATTGAGGATAGAAGATGAATATGACATGTGGGACAGAGATTTCAGTGAGAGCAGACTAT
GATCCCGGGTGGGATTGATATTTTCCCGGTGCGCCAAATTGGTCCAGGGTTGATGTTGACCGGGATTAGAAAGGTTAGGG
TACAGATTTCAGGGATTTAGAGGTGGAGGTTCAACTCCGACGAGGTCTACGAGTTTAAGGTTTAAAACAGACTTTACCCT
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>chr4D_9
--------TGCCGAGGGGACTTGAGCACGCAGTCGAGCAAGCGGGATCA--TGTCTGTTGTACGTGCACACAGCATCGTG
CACCTCCTGCC-G-CCATCGTTGTGACGGAGCTCGCCGGCACACGGGTCCGCCGCGTCGACCTGGAAGCTCGCGCCGCGC
TGCTCTACCATTTCCTGAA-------------------------------------------------------CGTGCA
AACACGGTTCCGCCAAGTCGA-CGTGAGCGCGGCCA-CCTCCACACTCTGCACGCCATCGCGTGCCGTCCTCCCAGCTCC
CGTTCCTCCTCTGACGAGTGACGACTCGCCGCGCACCGGCGACATCATGCTCTGCATGAAGGGCACCTCCATAGATTCCC
CGCGTGGGCCATGCGAACCGGGAAACGCCCGCACCCGACGCCCTTCATCTGCAATGCCCAGCCTCCTGCTTCTCGGTGCC
GCGCTGATTTCAGGAGAGAGGATTGAGAATAGAAGATGAATATGACATGTGGGACAGAGATGTTAGTGAGAGCAGACTAT
GATCCAGGACAGGATTGATATTTTCCCGGTGCGCCAAATTGGTCCAGGGTTGATGTTGACCGGGATTAGAAAGGTTAGGG
TACATATTTTAAAGATCCAGAGGTGAAGGTTCAATTCCGACGAGGTCTACGAATTTAAGGTTTAAAACATACTTTACTC-
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>chr1B_9
--------TGCCGAGGAGAATTGAGCACGCAGTCGAGCAAGCGGGATCATGTGTCTGTTGTACGTGCACACAGCATCGTG
AACCTCCTGCCGG-CCATCGTTATGACGGAGCTCGCCGGCACACGGGTCCGCCGCGTCGACCTGGAAGCTCGCGACGCGC
TGCTCTACCATTTCCTGAA-------------------------------------------------------CGTGCA
AACACGGTTCCGCCAAGTCGA-CGTGAGCGCGGCCCTCCTCCACACCGTGCACGCCATCGCGTGCCGTCCTCCCAGCTCC
CGTTCCTCATCTGACGAGTGACGACTCGCCGCGCACCGGCGACATCGTGCTCTGCATGAAGGGCACCTCCATAGATTCCC
CGAGTGGGCCATGCGAACCGGGAAACGCCCGCACCCGACGCCCTTCATCTGCAATACCCAGCCTCCTGCTTCTCCGCGCC
GCGCTGATTTCAGGAGAGAGGATTGAGGATAGAAGATGAATATAACATGTGGGACAGAGATGTCAGTGAGAGCAGACTAT
GATCCCGGACGGGATTGATATTTTCCCGATGCGCCAAATTGGTCCAGGGTTGATGTTGACCGGGATTAGAAAGGTTATGG
TACATATTTCAAGGATT---------------------------------------------------------------
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>chr2B_11
----------CCGAGGGGACTTGAGGACGCAGTCGAGCAATCGGGATCATGTGTCTGTTGTACGTGCACACAACATCGTG
CACCTCCTGCC-GTCCATCGTTGTGACGGAGCTCGTCGGCACGCTGGTCCGCTACATCGACCTGGAAGCTTGCCGCGCGC
TGCTCTACCATTTCCTGGC-------------------------------------------------------CGTGCA
AACACGGTTCCGCCAAGTCGA-CGTGAGCGCGGCCA-CCTCCACACCGTGCACGCCATCTCGTGTCGTCCTCCCAGCTCC
CGTTCCTCGTCTGACGAGTGATGACTCGCCGCGCACCGGCGACATCGTGCTCTGCATGAAGGGCACCTCCATAGATTCCC
GGCGTGGGCTATGCGAACCGGGAAACGCCCGCACTCGACGCCCTTCATCTGTGCTGCCCAGCCTCCTGCTTCTCCGTGCC
GCGCTGATTTCAGGAGAGAAAATTGAGGATAGAAGATGGATATGACATGTAGAACAAAGATGTCAGTGGGAGCAGACTAT
GATCCCGGGCAGGATTGATATTTTCCCTGTGCGCCAAATTGGTCCAAGGTTGATTTTGACTGGGATTAGAAAGGTTAGGG
TACAGATTTCAGGGAATCAAAGGTGGAGGTTCAGTTTCGACGAGGTCTACAAGTTTAAGGTTTAAAACAGACTTTACTC-
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>chr1A_199
AAGCTCGCGTCA--------------------------------------------------------------------
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----------------------------------------------------CGCTGCTCTACCGTTTCCTGAACGTGCA
AAGACGGTTCCGCCAAGTCGA-CGTGAGCGCGGCCA-CCTCCACACCGTGCGCACCATCATGTGCCGTCGTCCCAGCTCC
CGTTCCTCCTCTGACGAGTGACGACTCGCCGCGCACCGACGACATCGTGCTCTGCATGAAGGGCACCTCCATAGATTCCC
CGTGTGGGCCATGTGAACCGTGAGACGCCCGCACCCGACGTCCTTCATCTGCGCTGCCCAGCCTCCTGCTTCTCCGCGCC
GCGCTGATTTGAAGAGAGAGGATTGAGGATAGAAGATGGACGTGACATGTGGGAAAGAGATGTCAGTGAGAGCAGACTAT
GATCCCGGGCGGGATTGATATTTTCTTGGTGCGTCAAATTGGTCCAGGGTTGATGTTGACCTAGATTAGAGAGGTTAGGG
TACATATTTCAAGGATTCAGAGGTGAAAGTTCAATTCCGACGAGGTCTACGAGTTTAAGATTTAAAACAGACTTTACTCT
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>chr5B_211
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---------------------------------------------------GCGCTGCTCTACCATTTCCTGAACGTGCA
AACACGGTTCCGGCAAGTCTA-CATGAGCGCGGCCA-CCTCCACACCGTGCACGCCATCGCGTGACGTCCTCCTAGCTCC
GGTTCCTCCTCTGACGAGTGACGACTCGCCGCGCACCAGCGACATCGTGCTCTACATGAAGGGCACCTCTATA-ATTCCC
CGCGTGGGCCATGAGAACCGGGAAACGCCCGCACCCAACGCCCTTCATCTGTAATGCCCAGCCTCCTGCTTCTCGGTGCC
GCGCTGATTTCAGAAGAGAGGATTGAGGATAGAAGATGAATATGACATGTGGGACAGAGATGTCAGTGAGAGCAGACTAT
GATCCCGGGTGGGATTGATATTTTCCCGGTGCGCCAAATTGGTCCAGGGTTGATGTTGACCGGGATTAGAAAGGTTAGGG
TACAGATTTCAGGGATTCAGAGGTGGAGGTTCAATTCCGACGTGGTCTACGAGTTTAAGGTTTAAAACAGACTTTAC---
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>chr3D_820
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-----------------------ACCTGCAGAGCAGA-CCCAACCAATCAGTTGATTAAGCGGCGTGTTAGCGTTAGGTG
GGGTGCCATCGGTGTCTACAGTCTACTCTGCTCTGCCGGCCACCTACCCCGCTCCCCTC--------CGCAGC---TCTT
CCGGCATT----CGATCTCGCCCGTCGCTACACACCGTGCTTGCCAGGAGAAGAGA---------GGCGC---------C
ATGGCTGAGCCGCCGCCGACGGCGCCGGCGGCTAGCACAAGGAAGCTGTACGGATACGAGTTGTCGTCCAACTCGGTGCG
CATCGCGGCGCTGCTCAACGAGAAGGGCCTGCACTACGACCTCGTCCTCGTCGACGACACCAAGGCGCCCCACTTCCTCG
CCATCAACGTACATA----CGCCCACGCACTTCCCTGCTACTGC-----------------CATCAGCCGATGCG-CTCG
TTTGGTACTAAGAGCATTTACTGCCGGACCTTTCAAACCCGCCTCATACGTCCGAGCGAGCCGTCCGGTCACTGACTGAT
CATGTTTTTTCAATTCAAACAGATAAATCTCAAACGCCTGGACTGACCAGTACTCTCCATATTTAGTTCAAATATGGGAC
AGATATGGAGCGCCTGTGCACGCCTGTCAAGTCGGACCGGCTCATGCTGACCCACCCGACCCCACTTATATTCGTCCTCA
TCTGCTCGTCGCAGCAAACCCTAGCCACTTCACACCACACCACTCCCCTCCACTCCCCTCCGCCACCCGAGCTCACCTTC
TTTCGCGGTTTTCGGCCTTCTCCGCCATAGCGGGCAGCGTATCAGACTCCGATCCGTCCGGATCCGTCGACTGGGGTGTC
ATCCCGTGTAGGTTGGAGGAGGCAATGGCAATCCGCTTTGTACTCCGCCGCTCCTGGGAGGACAGTGCCCAGCTGTCGGA
CGGATCTGTCCGCCGTGACACAATAGCATTGGCTCACCAGGCGCTCGGGTCCTCTGGTGCTGGATCCTCGCGGTCCCAGC
TGGAACACCTTTCCTTTCCCATCATCGGTCGGGTAGAGTATGAGTCCCACCGGGAACGGGCGGCCCGTCGTTGGAAGGAG
AGGATAAAGGCCGCCGAGGCCCGTATCGCGGCGGAAATGGCGGCGGCTGATGCGGCGGCGCGGGCGGCCGCATCCGCGCG
TGCATTGTGAAGAAATGGCAGTGGAGGAACACACACACCCTCGCCCGAGAGCAGAATCGGGCAGTTCGTGCCATGGGCGG
AGTGCCACCGAAAAAAGGAGGAGAAGGAGGACAGCGACGGCGAGGACAACTCCGACGATGAGCAGATCCGGCTCGATCCG
CATTGAATCCTCGACCGGTACTTCCGCGAGAAGGACCACAGGGGCTCGGGAAGGGCAAGGGTAGCCGTGGATGAACTCCA
CCATAGCCAAATATGCCAAATTTTGATAGTCCGATATCATGTTTAGTGTAATGTGATGGAGTAGCCAGACGATGCGTGTG
CGTCGATGTAGTTGTACGAGTTTGTATGGATTTGAGATACGATAATTGAAGTGTCGAGATGTGGATTACATTATTTGAGG
GGTGCCTGGTTAGTGCCCGCGAACGCGCCTAAACGCGTCGGTTGGCATTTAAGGGGCTGGATTTGCCAAGTCCAGCTATA
GATGCTTTAATTTACTGTGTCTGCGTGGGTCGTGCAGCCCTTGGGCCAGGTCCCAGCGTTCCAGGACGGCAACGACATCC
TCTTCGGTACGCCCAAG------AAATTCAGACTTTCAGACTCGCCGGAGTTAATTGTCAACATTTTGGGCTAACCAAGT
GCACGAATTTTACCATAAAGAAAAACCAAGTGCACGAATTTGCTCGGACTTG----GGGATCGCGTGCAGAGTCCCGCGC
CATAAGCCGGTACATCGCGGCCAAGTACAGGTCCTCGGGCACGGACCTGCTGCCGGCCACGCCGTCGGCGAAGCTGGAGG
TGTAT---------------------------------------------------GAACTCCGCGTCAGGCCCCGGCTG
CCGGGCGGCGCGCCACCCGACCCGGCCGTGGTTGACGCGCTCGCCCGCAAGGTCGCCGACGTGCTCGACATCTACGACGC
CCACCTCGCCGTCGGGAACAGGTACCTCGCCGGCGACGCGTTCACGCTCGCCGACGTGAACCACATGGCGCAGCTGTTCG
TCATGAGCCGGACACCCCGGGCGGCGGAGCTGGTCGCGGCCAGGCCGCACGTGCAGGCGTGGTGGGACGAGATCTCCGCC
CGCCCCGCCTGGAAGAAGACCGTCGCCGCGCTCCCTCTCCCGCCGGCGTGAGGA-CGCCGGTGGCC--------------
---GGGTGTGGAATAAAAGCGTGATGTTTCATGTTTGTAGCAGGAGCAAATGATCAAATTCCCCAGAAATGTTGTTGATC
CGAGTGACATACTGGTCTGACATGAAGAGCTGACCATGATCGGCTATGAA-GAG--TAACTCAAATCCATTGT-TTGCCC
AGGCAATATAATGTGATGGCTTCTTGGGGTTCAGGCCAAGTGAACTATCCTGTTTCTTCCATCATCTCTGTAGAATTCAT
CTGGAATTCCTGTTGGCAAAGAAGCTCTTGATTGTTTGACGAGGAAACCGAACTGTGCCCAGTGCTAGTGGGCAACTTTA
TATAGCGATCTTTGGAGACATTAATTTTCCTTTGGGCGACGGCGGCACTGGTGTTTTGCAGCTATCAGACCAGGTTGCAG
CTATCTATTCAAGAATGGAGAGAGCAATTAGATACACCGAGTTGT----------------------------------C
AAATATTTTACGAACTTCATTTACGATTTTTTTGATATTTTCTGGTATACTAGATCTAGCTGGGTGGCAAAAGAAATTAC
G---------AAAATGGAATTGTGGAGGCACGAGGATCTCACCAATGA--------------------------------
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>chr3B_824
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---------------------------GCAGAGCAGA-CCCAACCAATCAGTTGATTG-----------AGCGTTAGGTG
GGGTGCGATCGGTGTCT------------GCTCGGCAAGCCACCTACCGCGCTCGATCCGCAGACGGCGCAGC---TCTT
CCGGTCTTCGGTCGATATCGCCGGTCGC--CACATCGTGTC--------------A---------GGCGC---------C
ATGGCTGAGCCGGCGGCGGCGGCT---GCGGTGAGCACAAGGAAGCTGTACGGGTACGCGCTGTCGTCCAACTCGGTGCG
CATCGCGGCGCTGCTCAACGAGAAGGGGCTCGACTACGAGCTCGTCGTCGTCGACGACACCAAGGCGCCCGACTTCCTCG
CCATCAACGTACGTACGCCCGCCCACGCACTTCCCAGCT----------------ACTGATCATCAGCCGATGCG-ATCG
TTCACTAATT----------------------------------------------------------------------
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----------TTTACCTCGTTTCCATGCGCCGTGCAGCCCTTGGGCCAGGTCCCGGCGTTCCAGGACGGCGACGACATCC
TCTTCGGTACGCCCACCCCAAAAAAATCCAGATTTTCAGACTCGCCGGAGTTAGTTGGCAACATTTTCGGCTAAT-----
--------------------------CAACTGCACGAATTTGCTCTGATTTG----GGGATCGCGTGCAGAGTCTCGCGC
CATAAGTAGGTACATCGCGGCCAAGTACCGGTCCTCGGGCACGGACCTGCTGCCGGCGACGCCGTCGGCGAAGCTGGAGG
TGTGGCTGGAGGTGGAGTCGCACCACTTCTACCCGGCCGTGGCCGACCTGGTGTACGAGCTCCGCGTCAGACCCCGGCTG
CCGGGCGGCGCGCCGCCCGACCCGGCCGTGGTGGACGGGCTCGCCCGCAAGGTGGCCGACGTGCTCGACGTCTACGACGC
GCACCTCGCCGCCGGGAACAGGTACCTCGCCGGCGACGCGTTCACGCTCGCCGATGTGAACCACATGGCGCAGCTGTTCG
TCATGAGCCGGACGCCCCGGGCGGCGGAGCTGGTCGCGGCCAGGCCGCACGTGCAGGCGTGGTGGGACGACATCTCCGCC
CGCCCCGCCTGGAAGAAGACCGTGGCCGCGCTCCCCCTGCCGCCGGCTTGAGGG-CGCCGGTGGCAGCCCC---------
--AGA------AATAAAGG-----TCTATAATGTTTTTAGCAGGAGCAGATGATCGAATTCCCCAGGAATGTTGTCGATG
TGAGTGACATACTGGTCTGACATGAACAACTGATCATGGCCGGCTATGAACGAG--TAATTCAAATCCTTTGT-TTGGCA
AGGCAAT-----GCGATGGCTTCTG----------------------------------CATTATGTCTGTAAAATTCAT
CAGGAATTCCTGTACGCCAA--------------------------------------------------------TTTG
TAAAAGAAATTGTTTG----------------------------------------------------------------
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>chr3D_889
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-------------------------CTCTGCTCTGTCGGCCACCTACCACGCTCCCCTC--------CGCAGC---TCTT
CCGATCTT----GGATCTCGCCGGTCGC--CGCACCGTGCTTGCCAGCAGAAGAGAAGCGATCGAGGCAC---------C
ATGGCCGAGGCGGCGGCGGCG------GCGGCGAGCACAAGGAAGCTGTACGGGTACGAGCTGTCGTCCAACTCGGTGCG
CATCGCGGCGCTGCTCAACGAGAAGGGGCTCGACTACGAGCTCGTCGTCGTCGACGACACCAAGTCGCCGGAGTTCCTCG
CCATCAACGTACGTACGCCCGCCCACGCACTCCCCAGCT----------------ACTGATCATCAGCCGATGCG-ATCG
TTCACTAATT----------------------------------------------------------------------
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----------TTTACCTCGTTTGCGTGCGTCGTGCAGCCCTTGGGCCAGGTCCCGGCATTCCAGGACGGCGACGACACCC
TCTTCGGTACGCCCAAG------AAACTCAATCTTTCAGACTCGCCGGAGTTAATTGTAAGCATTTTGGGCTAAT-----
--------------------------CAACTGCACGAATTTGCTCGGACTTGGTTTGGGATCGCGTGCAGAGTCGCGCGC
CATAAGCCGGTACATCGCGGCGAAGTACCGGTCCTCGGGCACGGACCTGCTGCCGGTGACGCCGTCGGCGAAGCTGGAGG
TGTGGCTGGAGGTGGAGTCGCACCACTTCTACCCGGCCGTGGCCGACCTGGTGTACGAGCTCCGGGTCAGGCCCCGGCTG
CCGGGCGGCGCGCCGCCCGACCCGGCCGCGGTTGACGCGCTCGCCCGCAAGGTCGCCGACGTGCTCGACGTCTACGACGC
GCACCTCGCCGCCGGGAACAGGTACCTCGCCGGCGACGCGTTCACGCTCGCCGACGTGAACCACATGGCGCAGCTGTTCG
TCATGAGCCTGACACCCCGGGCGGCGGAGCTCGTGGCGGCCAGGCCGCACGTGCAGGCGTGGTGGGACGAGATCTCCGCC
CGCCCCGCCTGGAAGAAGACCGTCGCCGCGCTCCCCCTCCCACCGGCTTGAGGGACGCCGGTGCCGGCGCCGTGGTCTGA
CTAGGGTGTGGAATAAAGGCGTG-------ATGTTTTTAGCAGGAGCAAATGATCAAATTCCCCAGAAATGTTGTTGATG
TGAGTCACCTAC--------------------------------------------------------------------
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>SNPs
SSS-SSSS---------S------------------------------------S----S--------------------
------S--S----S-------------------S-S--------------S----------------------S-----
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------------------S---
-----SS--------------S--------S-------------S----------------------S------------
-------SS------------------------------S-----S----------------------------------
-------------------------------------------------------------------------------S
-------------------S---------------------------------------------------S--------
----S-S---------------------------------S---S-----------------------SS---------S
--------------------------------------S--S-S-S----S-----------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS-------------SS--S----S-S--------------------------------
----------S---S--S-------------------------------S-S---------------------SSS---S
--------------------------------------------------S--------------S---SSSSSSSSSS-
--------------------------------------------S--------S--------------------------
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--------------------------------------------SSSSSSSSSSS--------------------S----
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---------------------------S-----------------S----------------------------------
---------------------------------S----------------------------------------------
-----------------------------------------------------------------S--------------
---------------------------------SS-----------------------S---------------------
-------S-----------------------------------S------------------------------------
-----------------------------S--------------------------------------------------
--------S---S-----------------------SSS-----------------------------------------
-------------------------------------------------------------------------S------
-----------------------------------S---------------------------------S----------
-----S---------S----------S--------------S--------------------------------------
------------S---------------------------------------SSSS-----------------S------
--------------------------------------------------------------------S-----------
-------------------------------------------------------------------------------S
----------------S-----SSS-S-S----S-SS-SSSS-SSSS---------------------------------
------S--------------S----------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-
-----------S------------S--S---------S-------S---------------------------------S
-SSSSSSSSS--S------------S-----S-----------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_785
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---------------------------------------------TGGTGGACTGTCACGTTACG---------------
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>reverse_4146
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-----------------------------------------------------------------GCCATGGATCTCTGG
TGGAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
