>input_sequence_66543
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--------------------------------------------------------------ATCCGCCTGC-CCCCCTT
CCTTCCTCCAATACAACAG--AGAGATCGCACCACCGGGGAGAGAGAGC--GAGAGCCATGAGGAGCGGCGGCGACGTCA
AGTCCTTCTTCCGGCAGCAGAAGGCCCACTCCGGCGCGGCGGCCACCA---AGCCCACCGGCGGCGTCTCCAAGAAGGCG
GCG---CACCACCACGAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACCCCGCCGCACGCCCA
ATCCCAACCCCGCCGATTCGTACGCCCGGCGCGGATTTGACCGCTCGATCGATCGATCTGGTGTTTTTT-TT-----TTT
-CAATCTGTTGTTGCATCTGCTGCAGACCACGGCGGCGGCGCCGACGCG---GGGAGGGAGGAGCTGGAGGACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACACGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGTACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGAGCATCACCA-CAGGGCCCCG-----------TCGAGTCACCGATCCCCGCCGCCGTCTCCACCCGCCA---CTACT
CGTGGTTCTGCGTACTGCTTCTTCTGTAGCCTTGTGCCCTCTTCAGTCTCCGTGTTGTCTTCAGTC----TTCCTCTGTA
CGTTA---------------------TGCGATGCCGTGTGATCCGATCCGATGCTGTATTAATCGCCGTATTAATCTCAG
TATAACCATTGCTGCATCCGGTGTGTTGC---------------------------------------------------
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---AAATCTATCTACATCCAATTACAGTCGA-GTTTTTTGACCAATATTAGTTGGGAATGCACGCG--------------
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-----------------GATAACCCTGATTGAAAATTAGAATGAACGTTCTAT--GACT--AC-----------------
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-------------------------------
>chr1B_1_TraesCS1B01G353400
ATTATACCGGTCCTTTCAGACTTTTTAATTGATGTTTTGACGGGAACTCCCAGTGATTTATGATTCGCATAAGCGTTTAG
GAATATTTTAGCCGCGTCATAGGGGGAAAAATGAATGCGA-GAGTTGTGGTGAATTCGGTTATCATGATATGAGCACGCT
CCCTTTAATTATTATTTTAGAGTTTTTGCTTCCTTTAATTTGAACTTGCCTACCATGGTGTTTATTGTCCTTTGTTCGTG
CTTAGCTTCGACATTGCTATGCAGAATTGATGCATATGTATCTTAATTAAGGGTGTGTCTAGAACTCAGTCAACTGGGAC
TTAACGAAGACTCAGTCGAGTGATGTCAGCATGTGTTTTTTGCTACAAGCGGCACAGCTATATGCTACAAACGGCGACAA
AAGATGTTGCGATGATATTGCAAGCAACCACAACAAATACTACTACTGTTCTAACTAAAATGCTACAACCGCAATGAAGG
ATGTTGCAACCGGTGAGATGACGTGCTACAACCGGTGAGGGATGGCATGCTTCAACCAACAAGACGGATGTTACAACCGA
TAGGAAAAAAATGTTGCAACTAGTCACAAAAATGCTGCATGGTCGACTAAGACTTGGTTAAATCTCAGTCGACTGATTTT
TAGCAGGGCCGCTTAATTAATGTGACTTATGTTTGTAAGATCAGGTAGATTGTCTGGTAATCTCATAACACCGTGTTTTT
TTTATG------------GCGTTGATTTTTCTATTACTCCCGTAGCAAAAGACAATTA----------------------
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---------------------------------------------------------------TTGTTTATGACATAAAA
AAAAGATGCACATTCTGGACCCAACGTGCACCGGTCTTTGTGTGT-GGCAACGGGCAAT-AGATGGGTCTCATCGGTCAA
TGCCAGCAAACAGAGCAGCGGCAGAAGCCTCGAGAGACGAGAGGACAGCGCCCAATTCAAAATTCAAAATTCGAACCACC
CACCACGCCCACCACAACACCCGCACCTTATAAACCC--CAATCCCCAATCCTCCGTCCACCATCCGCCTGC-CCCCCTT
CCTTCCTCCAATACAACAG--AGAGATCGCACCACCGGGGAGAGAGAGC--GAGAGCCATGAGGAGCGGCGGCGACGTCA
AGTCCTTCTTCCGGCAGCAGAAGGCCCACTCCGGCGCGGCGGCCACCA---AGCCCACCGGCGGCGTCTCCAAGAAGGCG
GCG---CACCACCACGAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACCCCGCCGCACGCCCA
ATCCCAACCCCGCCGATTCGTACGCCCGGCGCGGATTTGACCGCTCGATCGATCGATCTGGTGTTTTTT-TT-----TTT
-CAATCTGTTGTTGCATCTGCTGCAGACCACGGCGGCGGCGCCGACGCG---GGGAGGGAGGAGCTGGAGGACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACACGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGTACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGAGCATCACCA-CAGGGCCCCG-----------TCGAGTCACCGATCCCCGCCGCCGTCTCCACCCGCCA---CTACT
CGTGGTTCTGCGTACTGCTTCTTCTGTAGCCTTGTGCCCTCTTCAGTCTCCGTGTTGTCTTCAGTC----TTCCTCTGTA
CGTTA---------------------TGCGATGCCGTGTGATCCGATCCGATGCTGTATTAATCGCCGTATTAATCTCAG
TATAACCATTGCTGCATCCGGTGTGTTGC---------------------------------------------------
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---AAATCTATCTACATCCAATTACAGTCGA-GTTTTTTGACCAATATTAGTTGGGAATGCACGCG--------------
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-----------------GATAACCCTGATTGAAAATTAGAATGAACGTTCTAT--GACT--ACAC-TTGATCCAATACGA
ACGCTCTCAGATCAAATCAGAAGAAAAATGCAGTTTTCTGCTACACACAATACAATCGAATTGGATTTGATTGAAATTAT
CAATGCCTGTGCAGGGCAAGATATAGGATTTGGGGTGAAGCTTTCGGCTATCTATGTGGAGAGTTTCATCTTGGCTGGGA
TGATAGATTGATAGTATCGGCTGAATTTATGCACTGTGTCGGTGAAACAAGTGAGGTAACCTGTTCTTTAGCGAAATTTG
CTTATGACAATAATGCTTCTTGTAA-T---GGGTCGATGAACCCTCAGGTTTCCTTGTGAATGCCATTGTAAACGATGTA
ACCATATTACCAATTCAATAACCGTATGGGACATGTGGTTAGCAAAATCAGAATTCATATATTACCAATTCAATAAAGTG
GCCATGATGGCATTTCTTAACAAAA--TATTGTCAAATATATAAGAGCTCATGTAGATTGCAACAGACAAAATAAATACA
TATTGAGATCTCAGTTTCGTCCTTCATCTAGAGCCATTGCTCATGACAGCACCCACCAGAACACAAAGTTACAACGGCTG
CCCACATCTTAGCAGATCATAACATGAACGTGAAAAA-TTGCACATTCGTAACTGTTACATCACCAAAGAAAAGAAAAGA
AAAGAAAAATCCACTTCTCCGAATTCTCTCGAGTTTCGCTGCCGAACCTTTGGCACACAAACAAACTCGCTCACAACCAC
ATCCACCACCGTGCGAACACTCATCACATAACAGATTTGACATGGTAGGTTGAAGGTATATCATTGGTCCACAGGCTGGC
GAACTAGATGCCGAATATCAAGTCCATCACATTCGTTACAATAGATTTCGCTGGAGCAGCAACGCTGCCTGTTGTACGAC
GCCCTGCGTCTCTGATAACGTTTGTGGAGGACTTTGGGTCATATGGGCGCGGCAAGGCTCCCAACTGGTTTGATGCACCT
GTGCTGCTCTTCAGGACAAGTGATTTCGAAG
>chr1A_12
CCC-----------TTCAGACTTTTTAATTGATGTTTTGACGGGAACTCCGAGTGATTTATGGCCCGTGTAGGCGTTTAG
GAATATTCTAGCCGCATCATAGGAA-AAAATTTGAAAGAGGGAGTTGTGGTGAATTCGGTTATCATGATATGAACACGCT
CCCTTTAATTATTATTTTTGAATTTTCGCTTCCTTACATTTGAACTTGCCTATTACAGTGTTTATTGTCATTCGTTCATG
CTTTGCTTCGACATTGCTATGCAGAATTGATGCTTATGTATC--------------------------------------
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----------------TTAATGTGACTTATGTTTGTAAGATCGGGTAGATTGTTTGGTAACCACATAGCACCGTGTTTTT
TATG---ATACTCTTGTTGTGTTGATTTTTTTTTACTCAA--TAGCAAAAGAAAAAAATAAAG-----------------
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------------------------------------------------------------------------------AA
AAAATATACACATCCTGGACCCAACGTGCACCGGTCATGTGTG----GCAACGGACGATGAGATGGGTCTCATCGGTCAA
TGCCAGCAAACAGAGCAGCGGCAGAAGTCTCGAGAGACGAGAGGACAGCGCCCATTTCAAAATTCAAAATTCGAACCACC
-ACCACGCCCACCACAACACCCCCACCTTATAAACCC--CAACCTCCAATCCTCCGTCCACCATCCGCC---GCCCCCTT
CCTTCCTCCAATACAACAG--AGAGATCGCGCCGCCGGGGG----GAGAGAGAGAGCCATGAGGAGCGGCGGCGACGTCA
GGTCCTTCTTCCGGCAGCAGAAGGCCCACTCCGGCGCGGCGGCCACCA---AGCCCACCGGCGGCGTGTCCAAGAAGGCG
GCG---CACCACCACCAGAAGCAAGCGGCGACG---------------CGCCCGACGCCAGGTACTCCGCCGTACGCCCA
ATCCCAACTCCGCCGATTCGTACGCCCTGCGCGGA-TTGACTGCTCGATCGATCGATCTGGTGTTTATT-TGTTTTTTTT
TCAATCTGTTGTTGCTTCTGCGGCAGATCACGGCGGCGGCGCCGACGCG---GGGAGGGAGGAGGCGGAGGACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACATGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGCACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGAGCATCG-CCCCAGGGCCCCG-----------TCGAGTCACCGATCCCCGCCGCTGTCTCCACCTGCCA---TTCCT
CGTGGTTCTGCCTACTGCTTCTTCTGTAGCCTTGTGGCTTCTTCAGTCTTCCTGTTGTCTTCAGTCGAGTTTCCTCTGTA
CTTTGG-GTCGATCCTGCTGGGTGCGTGCGATGCCTTGTGATCCGACGCGATGATGTATTAATC------------TCAG
TATAATCTTTGCTGCATCTTTTTTTGAGCATAAGTACAGACACAAGCGCTCATATACACGCGCATACACTCACCCTTATA
AACGCACACACACACCCTACCCCTATGAGCACCTCCGAGAGACTGAGCCGGCATATCATCTTGAGATTTACGAAGTCACC
GTAGGCGTCTCGTCGTCGACGGGAACGTCTCCTTCCACTGAAAGCGTATCGCCGGAAATCCTGAAATAAATTCGAAAGAA
GTCCACATCACCCCCTGTGGTTTCAGAAACCGGCTAACCCACCCCCAACTCTGAAACCAGTTAACTAATCCCCTACCAAC
CAAGGCACCCCCTAATCCCAATTAAAGTGGTATCTGCCGATGGTTTTGCTTGCGTGGCTGTACAGGATGGCCACGTCGGC
TTGGTAGGGTGGGTCCGAGACTTAACTGCTCCTCCGATTTGTTTGGGCATCGTCTCCCTTATTTCCTTTCGACGAGACGG
CGGCGGGGCAAGACGGGATGATCGCCGCTTGAAGGTAGCAGCGCGACGACTCCAGAAGTCCAGGTTAGGCGCTCATCTCT
TTCATGCCCAGCACACACGTACTTCTCTGTGTTAACTACAGATTGAAACTTGCACACCTGCAAGGCTGCAACGACCCTTT
CTGAATTTAGATGTCAGACGCCAACTATATAGTCCTCGATCAGTCCGGTGATTAGTACTAACGCACCATAGTTTCACCCG
AGTAGTGTTTGCTGAGTTAATGTGAGAAGTACGTGTGTGCTGGGCATGAAAGAGATGAGCGCCTAACCTGGACTCCTGGA
GTCGTCGCGCTGCTACCTTCAAGCGGCGATCATCCCGCCTTGCCCCGCCGCCGTCTCGTCCAAAGGAAATAAGGGAGACG
ATGCCCAAACAAACCGGAAGAGCAGTTAAGTCTCAGACCCACCCTACCAAGCCGACGTGGCCATCCTGTACAGCCACGCA
AGCAAAACCATCGGCAGATACCACTTTAATTGGGATTAGGGGGTGCCTTGGCTGGTATTAGATATCTCAGGGGATTAGTT
AACTGGTTTCAGAGTTGGGGGGTGGGTTAGCCGGTTTCTGAAACCACAGGGGGTGATGTGGACTTCTTTCAATAAATTCA
GGAATAATGCGAGCACCAGGATTTGAACCCTGATGGGTTAGGGATACCACTGTCCACCTAACCAACTCAACCACAGGTTG
AGTAAATCTATCTAT-TCCCATTACAGTCGA-GTTTTTTGAGCAATATTAGTTGGAAATGCACACG--------------
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-----------------GATGACCCTGATTGAAAATTAGACTGAACGTTCTAT--GACCACACTAGTAGATCCAATACGA
ACGCTCTCAAATCAAGTCAGAAGAAAAATGCAGTTTTCTGCCACACTCAATACGAACGACTCGGATTCGATTGAAATTAT
TAATGCTTCTGCAGGACAAGATATAAGATTTGGGGTGAAGCTTTTGGCTATCTATGTGGAGAG-TTCATCTTGGCTGGGA
TGATAGATTGATAGGATCGGCTGAATTTATACACCATGTCTGTCAAACAACTGAGGTAGCTCATTCTTCAGCGAAATTTG
CTTATGACAATAATGCTTCTTGTAA-TACAGGGTCAATGAACCCCCTGCATTCCTGGCGAATGCCATTGTAAACGATGTA
ACCACATTACCAATTCAATAT-------------------------------------------------------AGTG
GCTATGATGGCATTTCTTAAAAAAA--TACTGTCAAATATATCAGAGTTCATGTAGATTGCAGCGGACAAAATAAATACT
AATTGAGATCTCAGTTTCGTCATTCATCCAGAGCCATTGCTCATGACAGCACCCACAAGAACACAAAGTTACAACAGCCG
CCCACATCTTAGCAGATCATAACATAAACGTGAAAATTTTGCACATTCATAACTGTTACATCACCAAAGAAAAGAAAAGG
---------TCCACTTCTCCGGATTCTCTCAAATTTCGCTCCCGAACCCTTTGGCGG---ACAAACTCACTTGCTACAGC
ATCAATCACCGTGACAG-----ATCACACAACAGATGAGACATGCTAGGCTGGAGGTATATCATTGGTCCACAGGCTGGC
GAACTAGATGCCGAATATCAAGTCCATCACATTGGTTACAATAGATTTCGCTGGCGCGGCGACACTGCCTGTTGTACGAC
GCCCTGCGTCTCTGATAACGTTTGTGGAAGACTTCGGATCATACGGGCGCGGCAAGGCTCCCAACTGGTTTGATGCTCCT
GTGTTGCTCTTCAGGACAAGTGATTTCGAAG
>chr1D_15
--------------TTCAGACTTTTTAATTGATGTTT-GACGGGAACTCCCAATGGTTTAGGTTT-GTGTAAGCGTTTAG
GAATATTTTAGCAGCATCATAGGAA-AAAAATGAAAGGGA-GAGTTGTGGTGAATTCGGTTATCATGATATGAACATGCT
CCCTTTAATTATTATTTTTGAATTTTTGCTTCCTTAAATTTGAACTTGCCTATCATGGTGTTTATTGTCCT---TTCGTG
CTTTGCTTCGACATTGCTATGCAGAGTTGATGCTTATGTATC--------------------------------------
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----------------TTAATGTGACTCATGTTTGTAAGAT-GGGTAGATTGTCCGATAACCACATAACACCGTGTTTTT
TTATGACATACTCTTGTTGCGTTGATTATTTTATTACTCCCGTAGCAAAAGATAATTAGAGGTTGTTTGGATTGAAGCCC
CCGTCCGCCCAGCCAATATTTTGGCATTGACCAAGAATGCGCAACTCGTTTGGATGAGCTCCAATCTTTTGGCTCGCCAG
CGCACCCCACCTTTCCCTCTTCTGTTTCTGCGCCAACGCATTGGCAAAACTGGGGCGGCCGAATCGGCCGCCAACATTTT
GGCGTGCCCACAATGCCCACGATTTGGCGTGGCGCTCCTGGGCATAAACCAAACAGACCCTTATTGTTTATGACAAAAGA
AAATACAG----TTCTGGACCCAACGTGCACCGGTCATGTGTGTGGGGCAACGGGCGAT-AGATGAGTCTCATCGGTCAA
TGCCAGCAAA-----------CAGAAGTCTCGAGAGACGAGAGGACAGCGCCCATTTCAAAATTCAAAATTCGAACCACC
-ACCACGCCCACCACAACGCCCGCACCTTATAAACCCCGCAATCCCCAATCCTCCGTCCACCATCCGCC---GCCCCCTT
CCTTCCGCCAATACAACAG--AGAGATCGCACCACCGGGGAGAGAGAGAGAGAGAGACATGAGGAGCGGCGGCGACGTCA
AGTCCTTCTTCCGGCAGCAGAAGGCCCACTCCGGCGCGGCGGCCACCA---AGCCCACCGGCGGCGTCTCCAAGAAGGCG
GCG---CACCACCACCAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACGCCGCCGTACGCCCA
ATCCCAACTCCGCCGATTCGTACGCCCGGCGCGGA-TCGACTGG--------TCGATCTGGTGTTTTTTTTA-----TTT
TCAACCTGTTGTTGCTTCTGCGGCAGATCACGGCGGCGGCGCCGACGCG---GGGAGGGAGGACGCGGAGGACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACATGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGCACGCGCTCTGCTCCGACGACCAGCCGTGCATCTGGGAGGGCCGCGTCTAGAC
TAGAGCATCACCCCCAGGGCCCCG-----------TCGAATCACCGATCC------------------GCCA---CTCCT
CGTGGTTCTGTCTACTGCTTCTTCTGTATCATTGTGGCCTCTTCAGTCTTCGTGTTGTCTTCAGTC----TTCGTCTGTA
CGTTTG--------------GGTGCGTGCTATGCCTTGTGATCCGATGAGATGCTGTATTAATC------------CCAG
TTTAACCTTCGGTGCATCTGGTGTGTTGTGC-------------------------------------------------
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-------CAATCTATATCCCACTACGATTGA-TTGTTTTGAGCATTATTAGTTGGGAATACATGCGGCATGTATATCTGA
TGATATTTCTGTCAACTTGTTGGATGAACTTTCTTTGGAACTTGTTGGATGAACTTTCTATGATCATCGGGAATGCTATT
CAGCAAACATTTGCTGGGGGAGTGACATTTGCGAACGTTTTTCACGGCAATTATGTTGTACAGAGCATCGCAATTTCTTT
AAGCAAACACAACAAATTTTTAAAGCAAATTCTTGCTTTGCCAGAAATCGTCAGAGTTTCTGACGTTTTTGCAGGAAAAA
AGATTCGCAAATACGAACGTCCCCTCACTATAGGGGTCCATGATTATTGTCTTGAATGCATCCAGCGTAAGGAAGCTCGT
CTCCAGGAATGCACGCCGATGACCCTGATTGAAAATTAGAATGAACGTTCTAT--TACTGCACTC-TAGATCCAATACAA
ACGATTTCAAATCAAATCAGAAGAAAAATGCCGTTTTCTGTTAAGCTAATTGTTGTCAAA--------------------
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--------------------------------TCAAATATATAAGACCTCATGTAGATTGTAACGGACAAAATAAATACA
TATTGAGATCTCAGGTTCAGCCTTCGT--------ATAGGTCATGATAGTACCCACCAGCACACAAAGTTACAGCAGCTG
CCCACATCTTAGCAGATCATAACATGAACGTGAAAAAC-TGCACATTCATAACTGTTACATCACCAAAGAAAAGAAAAGA
AAAA-----TCAACTTCTCCGGATTCTCTCGAGTTTCGCTGCCGAACCTTTGGCACACAAACAAACTCGCTCACAACCAC
ATCCACCACCATGCGAACACTCATCACATAACAGATTTGACATGGTAGGTCTAAGGTATATCATTGGTCCACAGGCTGGC
GAACTAGATGCCGAATATCAAGTCCATCACATTCGTTACAATAGATTTCGCTGGCGCGGCAACGCTGCCTGTTGTACGAC
GCCCTGCGTCTCTGATAACGTTTGTGGAAGACTTCGGATCATACGGGCGCGGCAAGGCTCCCAACTGGTTTGATGCACCT
GTGCTGCTCTTCAGGACAAGTGATTTCGAAG
>chr2A_980
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-----------------------------------------ATCCCCAATTCTCCATCCACCATCTGATTCTGCCCCCTT
TCTTCCTCCCACCGATCCTGAAGAGCTCGCACCGCCGGCG---------GAGAGAGCCATGAGGAGCGGCGGCGACGTCA
AATCCTTCTTCCGGCAGCAGAAGGCCCACTCCGGCGCGGCGGCCGCCACCAAGCCCGCCGGCGGCGTCTCCAAGAAGGCG
GCG---CACCACCACCAGAAGCAAGCGGCGGCGGCGGCGCATCTCCTCCGCCCGATACGAGGTATGCCGCCGCATGCCCA
ATCCCACGCAGTCGC---CGTCCGATCCCAGCGGA-TTGACTGATCGATCTATCGATCTGTTTTTTTTT-TC-----TTT
AATTCTTTGGC-TGCAGCTGCGGCAGATCACCGCGACGGCGCTGACGCGGCGAGGAGGGAGGAGGAGGAGGACGCGGAGA
GGACGGCCCGGTAGTTCGACATGGACACGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAACGCGCC
GCCGCGCTCGGCCTCGCCCCGCCGCCGCACGCGCCCTGCTCCGACCACCAGCCGTGCCTCTGGGAAGGCCGCGTCTAGAG
CGTCGCATCG-CCCTGCGGCCAAAGGCCCATCGAATCGAATCGTCGATCC------------------GCGCCACCTCCT
CGTGGTTCTACCAACTGCTT--------------------------TCTTCGTGTTGTCTTCAGTC----TTCCTCTGTA
CGT-----------------------------------------------------------------------------
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-------------------------------
>chr5D_1027
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---------AATACAACAG--AGAGATCGCGCCGCCGGCGAGAGAGA--GAGAGAGCCATGAGGAGCGGCGGCAACGTCA
AGTCCTTCTTCTGGCAGCAGAAGGCCCACTCCGGCGCAGCGGCCGCCA---AGCCCACCAGCGGCGTCTCCAAGAAGCCG
GCGCACCACCACCACCAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACGCCGCCGTACGCCCA
ATCCGAGCTCCGCCGATTCATACGCCCAACGCGGATTTGACCGATCGATCGATCGATCTGGTGTTTATT-TA-----TTT
TCAATCTGCTGTTGCTTTTGCGGCAGATCACGGCGACGGCGCCGACGCG---AGGAGGGAGGAGGCGGAGAACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACATGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGCACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGGGCATCG-CCCCAGGGCCCCG-----------TCGTATCACCGATCC------------------GCCA---CTCCT
CGTGGTTCTGCCTACTGCTTCTTCTGTAGCCA----------TCAGTCTTCGTGTTGTCTTCAGTC----TTCGTCTGTA
CGTTTGTGTCGATCCTGCTGGGTGCGTGCGATGCCGTGTGATCCGATGCGATGCTGTATTAATC------------TCAG
TATAATCTTTGCTGCATCTGGTGTGTTGC---------------------------------------------------
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---AAATCTCTCTATATACCATTACAGTTGAGGTTTTTTGAGCAATGTTATTTGGGAATGCACGCG--------------
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-----------------GATGACCCTGATTGAAAATTAGAATGAACGTTCTATATGACC--ACAC-TTGATCCAATACGA
ACGCTCTCAAATCAAATCAGAAGAAAAATGCAGTTTTCTGCTACACTCAATAAGACCAAGTCGGATTCGATTCAAATTAT
CAATGCCTGTGCAGGACAAGATATAGAATTTGGGGTGAAGCTTT-GGCTATCTATAGT----GTTTCATCTTGGCTGGGA
TGATAGATTGATAGGATCGGCTGAATTTATACACTATGCCTGTGATACAAGTGAGGTAGCTCATTCTTTAGCGAAATTTG
CTTATGACGATAATGCTTCTTGTAATT---GGGTCGATGAACCCCCAGCTTTCCTGGTGAATGCCATTGTAAACGATGTA
ACCATATTACCAATTCAATAT-------------------------------------------------------AGTG
GCCATGATGGCATTTCTTAA--AAA--CATTCTCAAATATATCAGAGCTCATGTAGATTACAACGGACAAAATAAATACA
TATTGAGATCTCAGTTTCATCCTTCATCCAGAGCCATTGCTCATGACAGCACCCACCAGAACACAAAGTTACAACAGCCA
ACA-----------------------------------------------------------------------------
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--------------------------------------------------GGCAAGGCCCCCAACTGGTTTGATGCACCT
GTGCTGCTCTTCAGGACAAGTGATTTCGAAG
>chr5D_1027
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---------AATACAACAG--AGAGATCGCGCCGCCGGCGAGAGAGA--GAGAGAGCCATGAGGAGCGGCGGCGACGTCA
AGTCCTTCTTCCGGCAGCAGAAGGCCCACTCCAGCGCAGCGGCCGCCA---AGCCCACCAGCGGCGTCTCCAAGAAGCCG
GCGCACCACCACCACCAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACGCCGCCGTACGCCCA
ATCCGAGCTCCGCCGATTCATACGCCCAACGCGGATTTGACCGCTCGATCGATCGATCTGGTGTTTATT-TA-----TTT
TCAATCTACTGTTGCTTTTGCGGCAGATCACGGTGACGGCGCCGACGCG---AGGAGGGAGGAGGCGGAGAACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACATGCGCTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGCACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGGGCATCG-CCCCAGGGCCCCG-----------TCGTATCACCGATCC------------------GCCA---CTCCT
CGTGGTTCTGCCTACTGCTTCTTCTGTAGCCA----------TCAGTCTTCGTGTTGTCTTCAGTC----TTCGTCTGTA
CGTTTGTGTCGATCCTGCTGGGTGCGTGCGATGCCGTGTGATCCGATGCGATGCTGTATTAATC------------TCAG
TATAATCTTTGCTGCATCTGGTGTGTTGC---------------------------------------------------
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---AAATCTCTCTATATCCCATTACAGTTGAGGTTTTTTGAGCAATGTTATTTGGGAATGCACGCG--------------
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-----------------GATGACCCTGATTGAAAATTAGAATGAACGTTCTATATGACC--GCAC-TTGATCCAATACGA
ACGCTCTCAAATCAAATCAGAAGAAAAATGCAGTTTTCTGCTACACTCAAAAAGACCAAGTCGGATTCGATTCAAATTAT
CAATGCCTGTGCAGGACAAGATATAGAATTTGGGGTGAAGCTTT-GGCTATCTATAGT----GTTTCATCTTGGCTGGGA
TGATAGATTGATAGGATCGGCTGAATTTATACACTATGCCTGTGATACAAGTGAGGTAGCTCATTCTTTAGCGAAATTTG
CTTATGACGATAATGCTTCTTGTAATT---GGGTCGATGAACCCCCAGCTTTCCTGGTGAATGCCATTGTAAACGATGTA
ACCATATTACCAATTCAATAT-------------------------------------------------------AGTG
GCCATGATGGCATTTCTTAA--AAAAACATTCTCAAATATATCAGAGCTCATGTAGATTACAACGGACAAAATAAATACA
TATTGAGATCTCAGTTTCATCCTTCATCCAGAGCCATTGCTCATGACAGCACCCACCAGAACACAAAGTTACAACAGCCA
ACA-----------------------------------------------------------------------------
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--------------------------------------------------GGCAAGGCCCCCAACTGCTTTGATGCACCT
GTCCTGCTCTTCAGGACAAGTGATTTCGAAG
>chr5D_1027
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---------AATACAACAG--AGAGATCGCGCCGCCGGCGAGAGAGATAGAGAGAGCCATGAGGAGCGGCGGCGACGTCA
AGTCCTTCTTCCGGCAGCGGAAGGCCCACTCCGGCGCAGCGGCCGCCA---AGCCCACCAGCGGCGTCTCCAAGAAGCCG
GCGCACCACCACCACCAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACGCCGCCGTACGCCCA
ATTCGAGCTCCGCCGATTCATACGCCCAACGCGGATTTGACCGCTCGATCGATCGATCTGGTGTTTATT-TA-----TTT
TCAATCTGCTGTTGCTTTTGCGGCAGATCACGGCGACGGCGCCGACGCG---AGGAGGGAGGAGGCGGAGAACGCGGAGA
GGAAGGCCAGGGAGTTCGACATGGACATGCGCTACGGGCCCTGCCTCGGCGTCACCCCCGCCCAGCGCTGGCAGCGCGCC
GCCGCGCTGGGCCTCGCCCCGCCGCCGCACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGGGCATCG-CCCCAGGGCCCCG-----------TCGTATCACCGATCC------------------GCCA---CTCCT
CGTGGTTCTGCCTACTGCTTCTTTTGTAGCCA----------TCAGTCTTCGTGTTGTCTTCAGTC----TTCGTCTGTA
CGTTTGTGTCGATCTTGCTGGGTGCGTGCGATGCCGTGTGATCCGATGCGATGCTGTATTAATC------------TCAG
TATAATCTTTGCTGCATCTGGTGTGTTGC---------------------------------------------------
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---AAATCTCTCTATATCCCATTACAGTTGAGGTTTTTTGAGCAATGTTATTTGGGAATGCACGCG--------------
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-----------------GATGACCCTGATTGAAAATTAGAATGAACGTTCTATATGACC--GCAC-TTGATCCAATACGA
ACGCTCTCAAATCAAATCAGAAGAAAAATGCAGTTTTCTGCTACACTCAATAAGACCAAGTCGGATTCGATTCAAATTAT
CAATGCCTGTGCAGGACAAGATATAGAATTTGGGGTGAAGCTTT-GGCTATCTATAGT----GTTTCATCTTGGCTGGGA
TGATAGATTGATAGGATCGGCTGAATTTATACACTATGCCTGTGATACAAGTGAGGTAGCTCATTCTTTAGCGAAATTTG
CTTATGACGATAATGCTTCTTGTAATT---GGGTCGATGAACCCCCAGCTTTCCTGGTGAATGCCATTGTAAACGATGTA
ACCATATTACCAATTCAATAT-------------------------------------------------------AGTG
GCCATGATGGCATTTCTTAA--AAAAACATTCTCAAATATATCAGAGCTCATGTAGATTACAACGGACAAAATAAATACA
TATTGAGATCTCAGTTTCATCCTTCATCCAGAGCCATTGCTCATGACAGCACCCACCAGAACACAAAGTTACAACAGCCA
ACA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGCAAGGCCCCCAACTGGTTTGATGCACCT
GTCCTGCTCTTCAGGACAAGTGATTTCGAAG
>chr5D_1027
--------------------------------------------------------------------------------
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---------AATACAACAG--AGAGATCGCGCCGCCGGCGAGAGAGAGAGAGAGAGCCATGAGGAGCGGCGGCGACGTCA
AGTCCTTCTTCCGGCAGCAGAAGGCCCACTCCGGCGCAGCGGCCGCCA---AGCCCACCAGCGGCGTCTCCAAGAAGCAA
GCGCACCACCACCACCAGAAGCAAGCGGCGGCG---------------CGCCCGACGCCAGGTACGCCGCCGTACGCCCA
ATCCGAGCTCCGCCGATTCATACGCCCAACGCGGATTTGACCGCTCGATCGATCGATCTGGTGTTTATT-TA-----TTT
TCAATCTGCTGTTGCTTTTGTGGCAGATCACGGCGATGGCGCCGACGCG---AGGAGGGAGGAGGCGGAGAACGTGGAGA
GGAAGGCCAGGGAGTTCGACATGGACATGCGCTATGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCAGCGCGCC
GACGCGCTGGGCCTCGCCCCGCCGCCGCACGCGCTCTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGAC
TAGGGCATCG-CCCCAGGGCCCCG-----------TCGTATCACCGATCC------------------GCCA---CTCCT
CGTGGTTCTGCCTACTGCTTCTTCTGTAGCCA----------TCAGTCTTCGTGTTGTCTTCAGTC----TTCGTCTGTA
CGTTTGTGTTGATCCTGCTGGGTGCGTGCGATGCCGTGTGATCCGATGCGATGCTGTATTAATC------------TCAG
TATAATCTTTGCTGCATCTGGTGTGTTGC---------------------------------------------------
--------------------------------------------------------------------------------
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---AAATCTCTCTATATCCCATTACAGTTGAGGTTTTTTGAGCAATGTTATTTGGGAATGCACGCG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------GATGACCCTGATTGAAAATTAGAATGAATGTTCTATATGACC--GCAC-TTGATCCAATACGA
ACGCTCTCAAATCAAATCAGAAGAAAAATGCAGTTTTCTGCTACACTCAATAAGACCAAGTCGGATTCGATTCAAATTAT
CAATGCCTATACAGGACAAGATATAGAATTTGGGGTGAAGCTTT-GGCTATCTATAGT----GTTTCATCTTGGCTGGGA
TGATAGATTGATAGGATCGGCTGAATTTATACACTATGCCTGTGATACAAGTGAGGTAGCTCATTCTTTAGCGAAATTTG
CTTATGACGATAATGCTTCTTGTAATT---GGGTTGATGAACCCCCAGCTTTCCTGGTGAATGCCATTGTAAACGATGTA
ACCATATTACCAATTCAATAT-------------------------------------------------------AGTG
GCCATGATGGCATTTCTTAA--A-AAACATTCTCAAATATATCAGAGCTCATGTAGATTACAACGGACAAAATAAATACA
TATTGAGATCTCAGTTTCATCCTTCATCCAGAGCCATTGCTCATGACAGCACCCACCAGAACACAAAGTTACAACAGCCA
ACA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGCAAGGCCCCCAACTGGTTTGATGCACCT
GTGCTGCTCTTCAGGACAAGTGATTTCGAAG
>SNPs
SSSSSSSSSSSSSS------------------------------------------------S----SS-----------
---------------S-------SSS---------S-S-----------------------------------S------
------------------S--S-------------S----------------S-------------------S-------
---S-----------------------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS--------------------------S-----------------S-S-----------------
---SSS------------------------S---------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------S----
----S-------------------------------S-SSSSSSS-----------S-----------------------
---------------------------S--------------------------S-------------------------
S---------------------------------------------------------------------SS--------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
---------------S-------------------------------------------------S--------------
-----------------------------------------------------------------------S--------
---------------------S-----S------------------------------------SS--------------
--------------------------------------------------------------------------------
---------------------------S----------------------------------------------------
------------S--------------------------------------------S---------S---------S--
-----------S------------------------S------------S------------------------------
----S------------------------------------------S----------------SSSSSSSSSSSS----
-------S----------S-------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------S----S---------------------S--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
---------S------------------------------------S------S-------S-----S------------
---------------S----------------------------S-----------------------------------
--------------S---------------S----S----S-----------------S-SSS-----------------
--------------------------------------------S---S------S------------------------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------S-------------------------------------------S---------------
----------------------------S----------------------------------------------S----
------------------------------------------------S-------------------------------
---SSSSSS------------S----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------S--S----------------------
----------------------------S-----S--S-----S------------------------------------
-------------------------------
>forward_652
--------------------------------------------------------------------------------
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------------------------------------------------------------------------CTGATTTT
TAGCAGGGCCGC--------------------------------------------------------------------
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-------------------------------
>reverse_1918
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-----------------------------------------------------------------------------ACT
CGTGGTTCTGCGTACTG---------------------------------------------------------------
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-------------------------------
>forward_653
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TGATTTT
TAGCAGGGCCGCT-------------------------------------------------------------------
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-------------------------------
>reverse_3951
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------------------------------GCACTGTGTCGGTGAAACAA------------------------------
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--------------------------------------------------------------------------------
-------------------------------
