>input_sequence_66542
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--------------ATGGCGTTTACCAAGAGGAACACAGGCGTGGTGTGCTTGGCCGCCCTCATGGTGGTGATGGCCACT
GTGATGCTGTTCTGTGATGCCGAATCAGGTTAGTGCAACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATTAT
CTGACCGACATGTGATTTTCTTCTCATCATATATCTGCCTCTGTAAAACTCTGGACGCAAGCCTTTTAAAATGTCTTATA
TTTATTTACAGATGTACTAATATTTTATATGTGATCTATGAATCCAACAAGATATTGT----------------------
---TTGTATGCAAGTACCAGCAAGCTATTGGTTGTAGTACCAATCTACAAACTGATCCGTTGTATATAATCCATACCTTT
TGCTAACTATTTTTTTTTCGTGTGTAGATATCTGCTTTGATATCCCCGGACCATGCGTGCAGTCGTTATGCAAGGAAGCA
TGTGCCAAAAACAATACCCCAAATAGACCCCGCTGCCAGCCCGTGACTGATGAATGCTGTTGCGACATGGCCGCACGGCC
CGAGGTCGCCGACGACGTCGTCCGTCATGCTTGA----------------------------------------------
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>chr1B_1_TraesCS1B01G017400
AATTAGGGTTAGCAAAGTATAAAATATCATTT-----AGCTTTTCTCCTTGTACCTCCATCTTGAGGATCAAAACCTCCT
AAAGGAGAAGGATCCCCATCATAGGATTATGAAGACCTCCCTAGGGAGAATTATCTATCTAGATCACC------------
---------------------TTACCTTGTGGTCCTTTTCCTTCGTTGTTTATGTACCTTGTGGATCTTGTGTAAATGTA
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--------------------------------------------------------------------AAAAAAAAGTCT
GTCACGTGTTTGTGTCGACAGATGTCTGTCCTAAATTTCAGCCTGATTTGCATCCACATGAATAAGAAATGGACACGCCG
TGCATCCGCTCGATGTCTGGCGCTCGGACTCGAGCGTCAGCCCCCCAACAACCTCCCACCGCCACCTGTACCATTTAATT
CATGCATCGAGGGCGAACCAACCTGCGGTTGGATGGTTAGAGGGACTGTGGTATCCCCAGCACACCAGGGTTCAAGTCAT
GGTGCTCGCATTTATTCCTGAATTTATTTCAGGATTTCCGGCGATGCACATTCAGTGGGAGGAGACGTTCCCGTCGACGA
TGATGTGCCTACGGTGACTCATTAATTTCAAGATGATATGCCGGCTCAGTCTTTCGGAAGTGCTCATAGGGATAGAGTGT
GCGTGTGTGCGTTCATAGGAATGAGTGTATGCACGTGTATATGAGCGCTTGCGTCTGTACTGTGTTAAAAAAATTCACGC
ATGGAGGAGGTCCCCAAATCCTCTTGCTACCGTTTAAAGAAAGCAAATCAATTCCAGCTAGTAA-AAGAAAAAGATAAGC
GACGGGGATGGGTACGTATACGTCTAATTTTAGACACGCATTGATTAATACATTAATCCAATGCTAAAATTAGGAC----
-----TTATGACTATAAACTCATGGAGGACCAATCTTCCCCTGTGCGCCTCCACCCTCTATTTAAAGGAACACTAGCGAA
AGGAGCTGTGCATCAGCGCATAGCCAAGAAGAGATCAAACATACATACAGTGTAGAAAAGAGATAAGTA-----------
-------TCTTGGCATGGCGTTTACCAAGAGGAACACAGGCGTGGTGTGCTTGGCCGCCCTCATGGTGGTGATGGCCACT
GTGATGCTGTTCTGTGATGCCGAATCAGGTTAGTGCAACACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATTAT
CTGACCGACATGTGATTTTCTTCTCATCATATATCTGCCTCTGTAAAACTCTGGACGCAAGCCTTTTAAAATGTCTTATA
TTTATTTACAGATGTACTAATATTTTATATGTGATCTATGAATCCAACAAGATATTGT----------------------
---TTGTATGCAAGTACCAGCAAGCTATTGGTTGTAGTACCAATCTACAAACTGATCCGTTGTATATAATCCATACCTTT
TGCTAACTATTTTTTTTTCGTGTGTAGATATCTGCTTTGATATCCCCGGACCATGCGTGCAGTCGTTATGCAAGGAAGCA
TGTGCCAAAAACAATACCCCAAATAGACCCCGCTGCCAGCCCGTGACTGATGAATGCTGTTGCGACATGGCCGCACGGCC
CGAGGTCGCCGACGACGTCGTCCGTCATGCTTGATAGCATAGCCTTGATTCATTATTGGACACACATTGTGGGGTGATCA
GGACATGTATGTAT----ATGCATGCGTGCGTCTCAGCAATTGCATTTTGAATAACAAGAAAACACAAAAGAGTGCATCA
TTGTTCTGAGTTTGAGATTCGTCATGTCGCAATGTACTTGTACATATCTCTCTCCCGGCACGCACCGCAGGTCTCTCGTC
TTCCCCAATACGTATGCTCTCGTCCTTGCCACTCCCTCCCCTACCCTCTCGCCATCGTCTCTTCTGGCACCGGTTCATGC
ACCCGACCGATCCAGAGTCTCCATGGACAATAGCGCGTATCCGCAGGGCTACGTCGTCCATGATCACGCATACTTGCACT
GAATTCACTATTTATTATCAAAGTACGTAAGCTTTTCCTCCAAAGTGTGGCATGGTGAAAGTTGACGGTGCCATGCAAGT
GAGGCCATCTTTTT-GTTTGTTAGTTTTTGCAATCTGAACCATGGTTGTGGAGATGAGTGGACAGCGAGATGAGCGTGTA
TATGAAATTCCAAAAGATAGAAAACGGATCAATTTTCATTCTAAGAAGCAAGGAGGCGATAATTAACCATTAATTAATGC
ATTAATTCCATCCTAAAATTAGGCAGGTAGTTAATCCTCTCCGTAA----ACGCCATAAACGGAGGCAGGCTGGATCGAT
CTGCGTGATTACATCTCCCCCTCTATATAACGAGCTATGTCAACACGTCGCCCCAATATCAAACCACAAAGAATACTAGA
AAAGATCTTAGATCGGCCATGATGCTGTCCTGCCATGCCTACAGTCGGTGAACATATAAGCGATCAAGTAATTAATCCAT
TATATGTACTAGC----------------TTTTTGTTCCATTCTGTGTACTAGCTTTTTGCGTTGACACTATT----GGG
AACACCGCATCTTTTTTGCATGACTGATGACAGATGTTGTTGTGATTTTGATCCCAAGTCCATGCCCAAGGTCGACGTTG
TCGGTCACGATTGATACATCGCC
>chr1D_1
AATTAGGGTTATCAAAGTATAAAATATCGTTTAAGAGAGCTTTTCTCCTTGTACCTCCATCTTGAGGATCAAGACCTCCT
AAAGGAGAAGGATCCCCATCGTAAGATTATCAAGACCTCCCTAGGGAGAATGATCTATCTAGATCACCAAGACCTCATCT
CCTTTGAATTTGGGAAGAATCTTACCTTGTGCTATTTTCCCTTTGTTTTTCATGTACCTTGTGGATCTTGTGTAGATGTG
AGTTGAGTGAATGTGTGATTGGACTTGTTCTTGATTGTTACTCTTGTGATTTCTCCACGTTCTTTCCCGTGTTCTTTACG
GATCCCCCCTTCGATTCATGAAAGATTACTATCAAGGGCTTGGTCCTATATCACAATGCATATAGAGGAGAGGAGACGTG
CGGTGATTAGGGCAACTCCATAAGGAAAAGAAGAAGAAAAACGATGATCCAACACACGGATGCAAACTAAAAAAATGTCT
GTCACGTGTTTGTGTTGATGCATGTCCGTCCTAAATTTCAGCCTGATTTGCATCTACATGAACAAGAGATAGACACGCCG
TGCATCCGCTTGATGTCCGGCGCTCGGACTCAAGCGTCAGCCCCCCAACAACCTCCCACAGGTGCTACTT----------
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-----------------------------------------------------------------------AATTCACGC
ATGCAGGAGGTCCCGAAATCCTCTTGCTACCGTTTAAATAAAGCAAATCAATTCCAGCTAGTAGTAAAAACAAGATTAGC
GA-GGGGATCGGTACCTATACGTCTAATTTTAGATATGCATTGATTAATACATTAATCCAAGGCTAAAATTAGGACGACA
ATTAATTATGACCATAAACGCATGGAGGACCAACCTTTGCGTGTGCGCCTCCACCCTCTATTTAAA----CACTAGCGAA
AGGAGCTGTGCATCAGCGCATCGCCAAGAAGATATCAA----ACATACAGTGTAGAAAAGAGATAAGTAGCTAGCTAGCT
TTGCATATCTTGGCATGGCGTTTACCATGAGGAACACAGGCGTGGTATGCTTGGCCGCCCTCATGGTGGTGATGGCCACT
GTGATGCTGTCCGGTGATGCCGAATCAGGTTAGTGCAACACGTTTCACATACATATA-----------------------
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-----------------------------------------------------------------------------TAT
GTGACCGACA--TGATTTCCTTCTCATCTA----CTGCCTCTGTAAAACTCTCCACACAAGCCTTTTAAAACGTCTTATA
TTTATTTACAGATGTACTAATATTTTATATGTGATCTATGAATCCAACAAGATATTGATTGTACCAATCTACCAGTTAAC
CCATTGTATGCATGTACCAGCAAGATATTGCTTGTA---CCAATCTACCAATTGACCCATTGTATATAATCCATACCTTT
TGCTAACTA-TTTTTTTTCGTGTGTAGATATCTGCTTTGATATTCCCGGACCATGCGTGCAGTCGTTATGCAAGGATGCA
TGTGCTAAAAATAATACCCCAAATAGACCCCACTGCCAGCCCGTGACTGATGAATGCTGTTGTGACATGGCCGCAAGGCC
CGAGGT---CGACGACGTCGTCCATCATGCTTGATAACATAACCTTGAATCATTATTGGACAAACATTGTCA-GTGATCA
GGATATGTATATGCATGCATGCATGCGTGCGTGTCAGCAATTGCATTTTGAATAACAA-AAAACACAAAAGAGTAAATCA
TTATTCTGAGTTTGAGATTTGTCATGTTGCAATGCACTTGTACATCTCTCTCTCCCCGTACGCATCGCAGGTCTCTCGTC
TTCCCCAATATGTATGCTCTCATCCTTGCCACACCCTCCCCTACCCTCTCACCATCGTCTCTTCTGGCACCGGTTCGTGC
ACCCGACCGATCCAGAGTCTCCAAGCTAGCCATACCGTAT-------------------ATGATCACGCATGCTTGCACC
GAATTCTCTACTTATTATCAGAGTACGTGAGCGTTTCCTCGAAAGTGTGGCGTGGTGAAAGGTGACGGTGCCATGCAAGT
GAGGCCATCTTTTTTGTTTGTTATTTTTTGCAATCTGAACCATGGTTGTGGAGACGAGTGGACAGCGAGATGAGCGTGT-
---GAAATTCCAAAAGAAAGAAAACGAATCAATTTTCGTTCTGAGAAGCAAGGAGGCGATAATTATCCATTAATTAATGC
ATTAATTCCATCCTAAAATTAGGCAGGTAGTTAATCATCTCCATAAACGTACGCCATAAACGCAGGCAGGCTGGATCGAC
CTGCGTGATCACATCTCCCCCTATATATAACGAGCTATGTCAACACATCGCCCCAATATCAAACCACAATGAATACTAGA
AGAGATCTTAGATCGGCCATGATGCTGTCCTGTCATGCCTACAGTCGGTGAACATATAAGCGATCAAGTAATTAATCCAT
TATATGTACATCTACTGTGCTCTAGTTCATTTTTGTTCCATTCTGTGTAGCTTTTTGCATGATTGACGATGGTTACGGGA
AACACCGCACCTTTTGA--ATGACTGATGGCAGAAGTTGTTGTGATTTTGACCCCAAGTCCATGCCCAAGGTCGACGCTG
TCGGTCCCGATTGATACATCGCC
>SNPs
-----------S----------------S-------------------------------------------S-------
--------------------S--S------S--------------------S----------------------------
-------------------------------S-SS---S----S---S--S-----------------------S----S
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---------------------------------------------------------------------------S----
---------------S--SSS-----S---------------------------S-------S----S--S---------
----------S------S-------------S---------------------------S-SSS-SSS-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------
---S----------S-----------------------S------------------------S---S--S-----S---
--S------S-----S------------------S-S------------------------S------------------
------------S------S-------------S---SS-S-------------------------SSSS----------
---------------------S----------S-----SSSS--------------------------------------
---------------------------S------------------S---------------------------------
----------S-S-----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
S---------SS------S---------SSSSSS------------------SS--S--------------S--------
---------------------------------------------------------S----------------------
------------S-----------S-----S-----SSS---------S--S---S--S---------------------
---------S---------------------------------S--------------------------------S---
-----S-----S-------------------S------------------------------S------------S----
------SSS--------------S------------S----S------S-------------S-------SSS-------
---S------S-SS------------------S-------------------------S---------------SS----
--S----------------S-------S------S----------S----------S-S-----S---------------
----------S----------S----------S-----------------S-------------------------S---
-----------------------S-SSSSSS-SSS-----SSSSSSSSSSSSSSSSSSS------------S-------S
------S---S---------S-------S---S-------S----------S---------S------------------
-----------------------S------------------------------S------------------------S
SSS--------------S--------S----------S----S----------------------S--------------
------------------------------------S-----S-------------------S----------------S
---------S------------S-----------------------S----------------------S----------
-S------------------------------S-----------------------------------------------
---------SSSS------------------------------------SSSSS--SSSSSS-----SS-SS-------S
---------S-----SSSS----------S----S----------------S-------------------------S--
------S----------------
>forward_811
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-----------------------------------------------------------------------CGTCGACGA
TGATGTGCCTA---------------------------------------------------------------------
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>reverse_2530
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-------------------------------------------------TACGTCGTCCATGATCACGC-----------
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