>input_sequence_66504
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--------------------------------------------------------------------------ATGGCT
CCGATCGCCTCCT---TTGCCGCAGCGGTGCTTCTACTCCTCGCACTGGCGTCACCGGCGGCAACCTTCAACATCACCAG
AATCCTTGGCGAGTTTCCCGACTTCTCCACGTTCAACGGCCTCCTCAGTCAGACGAAGCTCGCGGACGAGATCAACCGCC
GGCAGACTATTACGGTGCTGGCAGTCAACAATGGAGGGATGGGCGCCATCACCTCGCTCCCCTCGGACATCCAGCGGAAG
GTGCTCGCCGTGCACGTGGTCCTGGACTACTACGACGCGGAGAAGCTGGGCAGCATGAAGAACCGCTCGGCCGTGCTCAC
GACGCTCTTCCAGTCTACCGGCCAGGCCACCAACCGGATGGGCTTTATCAACTACACCAGGCGCGCCGCCGACGGCGTCA
TGATGTTCGGCTCCGCCGAGCCCGGCGCCCCATTGACGTCCCAGATGGTGAAGCCCGTCATGTCCCGCCCCTACAACATC
TCCGTGCTGGAGGTCAGCTCTGCCATCGTGCCTCCCAGCATCGGCTCCGTCGACAACAGCAGAGCTCGCGCTCCGGCGCC
TGCCCTTACTAAGATTCCTGCGCCAGCACCGGCGCCGTCCAAGAGCAAGAAGCCAAAGACGGAGGGAGCCCCCACCCCTG
CTCCTGCCCCGTCCGACGACGATTCTAGCACTAACGCACCTGCCGACGCGGATGGGCCCGACGCGGACGGCCCGGCGACG
GATGGGCCCGATGCGGACGGCCCGGCGGCGGATGCGCCGGCAGATGATGATGATGACAAGAGCAGCGACGACACCGGGGA
CGCTGCGGGCAGGGTGGTTGCCCGTGCAAGTCTCGGTATCGTGGCGCTTCTGGTGATTCTTGTTTCGCTCTGA-------
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>chr2A_1_TraesCS2A01G269200
AAGCATATTTGAATAATTGAATAGATAATCTATATTTAACTAATATTTGTTCTTCTGCAGGTTTTATGGACTATACTACT
GTCTGCTCTTGTTGGGTATTCACTATACCAGAAAAGACGTCATTAACAAGTCACAAAATTGACTCAAGCAAACCACGCCA
GTATGTAGTGCTGCTTTGAGAATGCTCTCAGAAAAGTCACAACATTGACTCTGACATCATCTTTTATCCTTTTTGCAGGG
ATTTTTCTTTATTTCCAGATGTTTTGGCATGGTTGATGAACCGAATCATTTGACAGTTTATTGATAGGTTAGTGCATATA
AAATCGTGGTGTTAGTTTCGGAGTTGACATGTAAAGTCATGCATACCACAGGTATACTGTAGCTTAGTTGCGAGCGCTAA
CTGAAAATAAAAAGGATGTATGTTATACAGGGTGCTGTCAGAGTTTATTCTTGACATGGCCTTTCTACAAATGGACAGAT
GAACTGTGATTGTTTTCATGAAGGAAAGGGGGGCAC----------TATTTTGAAACGGAGCTCCATTTTTGAACTAGTA
AAAATCAAAGGAACGAAAAAAGAGAGCAAGAAGAAAAAGATAAGCTGGACCCTTTGGACTCCTGTAAATAAAGATGATCA
TAGATGTGGCAAGTCAA---------------------------------------------------------------
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------------------------------------------------CCTTGTTAGGTGTATCTGCTC-----------
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------------------------------------------------GCTCGCATAAGGCCAGCCTGGGTCGAGCTTCT
CTGCCAGAGCACCATGGGCACCGTCGAGAACACATGAATTCTGAATCGAAAATCAACACACAGTGATCGGATC-------
---TGAGCACCCGTTACAATGGTTGAGCCTCGCAGACAGACTGTCACCACAAACCATGCAGATGCAGATGTCCAGGTTTA
GCATCACCATGTCCAGCCATTGACGTCTAAGTTTAGGATCGCCGTGTCCAGCCATGGACGTCCAAGTTTAGCATCCTAAC
CACACCTGAATGACAATTGT----CTTAACCAGCGACAAGTCGCTCAATCTCCGGCGAAGCAAATTGCACCACCATGGCT
CCGATCGCCTCCT---TTGCCGCAGCGGTGCTTCTACTCCTCGCACTGGCGTCACCGGCGGCAACCTTCAACATCACCAG
AATCCTTGGCGAGTTTCCCGACTTCTCCACGTTCAACGGCCTCCTCAGTCAGACGAAGCTCGCGGACGAGATCAACCGCC
GGCAGACTATTACGGTGCTGGCAGTCAACAATGGAGGGATGGGCGCCATCACCTCGCTCCCCTCGGACATCCAGCGGAAG
GTGCTCGCCGTGCACGTGGTCCTGGACTACTACGACGCGGAGAAGCTGGGCAGCATGAAGAACCGCTCGGCCGTGCTCAC
GACGCTCTTCCAGTCTACCGGCCAGGCCACCAACCGGATGGGCTTTATCAACTACACCAGGCGCGCCGCCGACGGCGTCA
TGATGTTCGGCTCCGCCGAGCCCGGCGCCCCATTGACGTCCCAGATGGTGAAGCCCGTCATGTCCCGCCCCTACAACATC
TCCGTGCTGGAGGTCAGCTCTGCCATCGTGCCTCCCAGCATCGGCTCCGTCGACAACAGCAGAGCTCGCGCTCCGGCGCC
TGCCCTTACTAAGATTCCTGCGCCAGCACCGGCGCCGTCCAAGAGCAAGAAGCCAAAGACGGAGGGAGCCCCCACCCCTG
CTCCTGCCCCGTCCGACGACGATTCTAGCACTAACGCACCTGCCGACGCGGATGGGCCCGACGCGGACGGCCCGGCGACG
GATGGGCCCGATGCGGACGGCCCGGCGGCGGATGCGCCGGCAGATGATGATGATGACAAGAGCAGCGACGACACCGGGGA
CGCTGCGGGCAGGGTGGTTGCCCGTGCAAGTCTCGGTATCGTGGCGCTTCTGGTGATTCTTGTTTCGCTCTGACTTATGC
CCCCTGCGTACAAGTAGGTTAGATATGGTTCAAAGCAGCA-CTACGATGGTGTGTAGGCAAAAAACGTGATCGGATTGGC
TGTCAAATCGAAATTACTGTACCAAGAGAAGGCACACTGGCAGGATGTGCGAGATAGGAGGGACGCCGTAGGCGATTTAC
TTTTTTTTTGAACATCAGTACATACACAAGCGCTCATATACACGCGCATACACTCATCCCTATGAACGCACACACGCACA
CCCTACCCCTATGAGCACCTCCGAAAGACTGAGCCGGCATATCATCTTGAGATTTACGAAGTCACCGTAGGCGCCTCGTC
GTCGACGGGAACGTCTCCTCCCACTGAATGCGCATCGCCGAAAATCCTGAAATAAATCCAGTAATAAATGCGAGCACCAG
GATTTGAACCCTGGTGGGCTGGGGATACCACAGTCCCTCTAACCATCCAACCACAGGTTGGTTCGCGCCGTAGGCGATTT
ACTGCTCAGTATCGTTCGGTGCGTAGTCGAGTGTGTGTCACCTATTTAGTTCTGTAGGACTAGCACAAATGCCCGTGCGT
TGCAATGGGGAAAAATAGTTTATTTTCAAGTTCATTTAAAATAATATGTGCAAAAATACATTCGTTGTTCATGCAAATTT
TAGTCAATTTTTTTAAGATCCAAAATTATTGAAATAGGACATGCTAATCTTATAGAATATTTCTTTATCTACATCAACAT
ATTTTCTTCTATGATTTTTTTAGGAACTCATCCTTAAAAGAAATTAGAAACTTGATAAAGTTTAGCCAATACCACTAACA
AAATTCGGAGAGAGATAGCATACCTTCGCAACAACTATTATATTTTTGGGCTTCTTCGTGTGGATGAACATTCACATTCA
ACGGAAGTGATCTATTTGGATATTTTTTTTATGTTAAAAATATTGTACTAAAATAGTGTTTTGGCTCCCCACGTTCCTTG
TTTAAAACAAAGTCTATTTATCTTTTCATTAACA
>chr2B_1
AAGCGTATTTGAATAATTGAATAGATAATCTATATTTAACTAATATTTGTTCTTCTGCAGGTTTTATGGACTATACTACT
GTCCGCTCTTGTTGGGTATTCACTATACCAGAAAAGACGTCATTAACAAGTCACAAAATTGACTCAAGCAAACCACGCCA
GTATGTAGTGCTGCTTTGAGAGTGCGCTCAGAAAAGTCACAACATTGACTCTGACATCATCTTTTATCCTTTTTGCAGGG
ATTTTTCTTTATTTCCAGATGTTTTGGCATGGTTGATGAACCGAATCATTTGACAGTTTATTGATAGGTTAGTGCATATA
AAATCATGGTGTTAGTTTCGGAGTTGACATGTAAAGTCATGCATACCACAGGTATACTGTAGCTTAGTTGCGAGTGCTAA
CTGAAAATAAAGAGGATGTACGTTATACAGGGTGCTGTCAGAGTTTATTCTTGACATAGCCTTTCTACAAATGGACTGAT
GAACTGTGATTGTTTTCATGAAGAAAAGGGGGGCAC----------TA-TTTGAAACGGAGCTCCATTTTTGAACTAATA
AA--TCAAAGTAACGAAAAAAAAGAGCAAGAAGAAAAAGATAAGTTGGACCCTTTGGACTCCTGTAAATAAAGATGATAA
TAGATGTGGCATGTCAA---------------------------------------------------------------
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------------------------------------------------CCTTGTTAGGTGCATCTGCTC-----------
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------------------------------------------------GCTCGCATAAGGCCTGCCTGAGTCGAGCATCT
CTGCCAGAGCACCATGGGCACCGTCGAGA-CACATGAATTCTGAATCGAAAATCGACACACAGTGATCGGATGTTGCAAT
GGTTGAGCCTA-----------------CTCGCAGACAGACTGTTGCGCCAAACCATGCAGATGCAGATGTCCAGGGTTA
GCATCACCATGTGCAGCCAGTGACGTCTAAGTTTAGGATCACCGTGTCCAGTCATGGACGTCCAAGTTTAGCATCCTAAC
CACACTTGAATGACAATTGTCTTCCTTAACCAGCGACAAGTCGCTCAATCTCCGGCGAAGCAAATTGCACCACCATGGCT
CCGATCGTCTCCTCCTTTGCCGCGGCGGTGCTTCTACTCCTCGCATTGGCGTCACCGGCGGCAGGCGTCAACATCACCAG
AATCCTTGGCGAGTTTCCCGACTTCTCCACGTTCAACGGCCTCCTCAGTCAAACGAAGCTCGCCGACGAGATCAACCGCC
GGCAGACTATTACGGTGCTGGCAGTCAACAATGGAGGGATGGGCGGCATCACCTCGCTCCCCTCAGACGTCCAGCGGAAG
GTGCTCGCCGTGCACGTGGTCCTGGACTACTACGACACGGAGAAGCTGGGCAGCATGAAGAACCGCTCGGCCGTGCTCAC
GACGCTCTTCCAGTCCACCGGCCAGGCCACCAACCGGATGGGTTTTATAAACTACACCAGGCGCGCCGCCGACGGCGTGA
TGATGTTCGGCTCCGCCGAGCCCGGCGCCCCATTGACGTCCCAGATGGTGAAGCCCGTCATGTCCCGCCCCTACAACATC
TCCGTGCTGGAGGTCAGCTCTGCCATCGTGCCGCCCAGCATCGGCTCCGTCGACAACAGCAGAGCTCACGCTCCGGCGCC
TGCCCATACTAGGACTCCTGCGCCAGCACCGGCGCCGTCCAAGAGCAAGAAGCCAATG---------------ACCCCTG
CTCCTGCCCCGTCCGACGACGATTCTAGCGCTGACGCACCTGCCGACGCGGATGGGCCCGACGCGGACGGCCCGGCGGCG
GATGGGCCCGATGCGGATGCGCCCGATGCGGATGAT---------------------------------GACACCGGGGA
CGCTGCGGGCAGGGTGGGTGCCCGTGCAAGTCTCGGTATCGTGGCGCTTCTGGTGATTCTTGTTTCGCTCTGACTCATGC
CCGCTGCGTACAAGTAGGTTAGATACGGTTCAAAGCAGCACCTACGATGGTGTGTAGGC-AAAAACGTGATCGGATTGGC
TGTCAAATCGAAATTAC-----CAAGAGATGGCACACTGGCAGGATGTGCGAGATAGGAGGGA-----------------
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-----------------------------------------------------------------CGCCGTAGGCGATTT
ACTGCTCAGTATCGTTCGGTACGTAGT-----------------------------------------------------
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>chr2D_1
AAGGATATTTGAATAATTGAACAGATAATCTA--TTTAACCAATATTTGTTCTTCTGCAGGTTTTATGGACTATACTACT
GTCTGCTCTTGTTGGGTATTCACTATACCAGAAAAGACGTCATTAACAAGTCACAAGATTGACTCAAGCAAACCACGCCA
GTATGTAGTGCTGCTTTGAGAGTGCTCTCAGAAAGGTCACAACATTAACTCTGACATCATCTTTTATCCTTTTTGCAGGG
ATTTTTCTTTATTTCCAGATGTTTTGGCATGGTTGATGAACCGAATCATTTGACAGTTTATTGATAGGTTAGTGCATATA
AAATCATGGTGTTAGTTTCGGAGTTGACATGCAAAGTCATGCATACCACAGGTATACTGTACTTTAGTTGCGAGTGCTAA
CTGAAAATAAAGAGGATGTACGTTATACATAGTGCTGTCAGAGTTTATTCTTGACATAGCCTTTCTACAAAGGGACAGAT
GAACTGTGATTGTTTTCATGAAGAAAAGGGGGGCATTATTTGGCATTA-TTTGAAACGGACCTCCATTTTCGAACTAGTA
AA--GCAAAGGAACGG--AAAAAGAGCAAGAAGAAAAAGATAAGCTGGACCCTTTGGACTCATGTAAATAAAGATGATAA
TAGATTTTTTTTTTAGAAAAGGAGGATGTATCCCGGGCCTTTGCATCTAGACGATGCATGCAACCATATTATTAATTATT
CTCAAAGACCTTACAAGGTAATACAACAATAAGCCTGAAGCCATCATTTTGGTAACGCTTGTTGCTACTCTTATCACTTA
ATGAAGGGGTGCCGACTGTCCGAGCCTAATACTAAACAGGCATCGCACAAAAGTCTAAAATTTAAAGCCGGATGCCCCAT
CCAAGCCACTACCTAGACTGGGTCACACACTGGTCTGGCACACTTCCAGTGAGCACCGCATACTGCAAGGGCCGTCACCT
CCATCTTCCATCAATCCATCCTCAGAGCAGAACTGATGCATCGACCTTACTAGGCCTCGTTGCCATCGATGACACCACGA
CGCTAAACAGCATCGCCCTCCTGCGCGGGTCCGTCAACCCGCATCGGACGCCGAGCCTCCGCTGCACCACGCCGTCGAGA
CCCACCCGACATTGATGCAGAAGATGAAACCCCACTCCGCCTCTGGGCCCTTCCAATGAGCACCTGCTCCAAAACGATAC
CCTCAAGAGGGGGAACAACACCATAGTTTCCGTCATCATCTGACCTGGCAGAACCAGATCCAGGGTTCCCGCCGAAGCAA
ATGCCTCCCGGAGGACGAGGGGCACACCAACTGCAACTGCACACGAACACGAGCCGTGCCCACGACCACTTAGCTCTCCC
AACGGCGCCTTCAAGAAGGACATGGCGCCATGAGCGCCGTCGCCGCCCTAGAGTTTTCACCCGAGAAATCGTGGAGTGGG
AAAAGGTGGGGCGGACCTGAACGACGTCTCCAGGAAGAGAAATGGCATCCTCGGGCGTCGTCGCTGTCGCGGCCGGTAGG
AGCCGACTAGGGAATTATCCCAATCCGAATCCCCACCTCCCGCTCCGCCCCATCCGGTGACCGGCAAGCAACGCAGCCAT
GTCCGTTATGACGGAGTGCACGATGCAAGTATTGGAGGAAGAAGCAGCTCGACGTCGTTGGCCGCCGAGGCAACAAGCCA
CCAACCCGCCGGTGGATCGCGGCCATCCGACCCGATCCCTGACAGCCCGCCCGCCACCGGACAGGGAGGCCCACCTCGGG
GTCGCCGCCCGGGATCCAAGGCCTTCCGCCCTAGATCGGGAGGAGCAGCGCCAACACTGCCACCACAACTGCCGATAGGA
CGCCGGCCAGCCGCCACACCGCCGAAGTCCAGATCTGGGCCGTCATGAACCAGATTGGTGCCGCCACAGCCCAGATCTGG
ATCACACCCTCGAGCCAGGGAGCCCGGTGTCGCCCTTCGACCCGCGAGAGGGAGGAGTGCGTCCGCCGGCGCACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAGTAGA
TATCATTCAGAATGCAGATAACACCGTGGATGGTGTTTTCCTGCTAGAGCTCCCAAAAGGCCAGCCTGAGTCGAGCTTCT
CTGCCAGAGCACCATGGGCACCGTCGAGAACACATGAATTCTGAATCGAAAATCGACACACAGTGATCGGATG-------
---TGAGCCTA-----------------CTCGCAGACAGACTGTCGCGCCAAACCATGCAGATGCAGATGTCCAGGTTTA
GCATCACCATGTCCAGCCATTGACGTCTAAGTTTAGGATCGCCGTGTCCAGCCATGGACGTCCAAGTTTAGCATCCTAAC
CACACCTCAATGACAATTGTCTTCCTTAACCAGCGACAAGTCGCTCAATCTCCGGCGAAGCAAATTGCACCACCATGGCT
CCGATCGTCTCCTCCTTTGCCGCAGCGGTGCTTCTACTCCTCGCACTGGCGTCACCGGCGGCAGCCTTCAACATCACCAG
AATCCTTGGCGAGTTTCCCGACTTCTCCACGTTTAACGGCCTCCTCAGTCAGACGAAGCTCGCCGACGAGATCAACCGCC
GGCAGACTATTACGGTGCTGGCAGTCAACAATGGAGGGATGGGCGCCATCACCCCGCTCCCCTCAGACGTCCAGCGGAAG
GTGCTCGCCGTGCACGTGGTCCTGGACTACTACGACACGGAGAAGCTGGGCAGCATGAAGAACCGCTCGGCCGTGCTCAC
GACGCTCTTCCAGTCCACCGGCCAGGCCACCAACCGGATGGGCTTTATCAACTACACCAGGCGCGCCGCCGACGGCGTCA
TGATGTTCGGCTCCGCCGAGCCCGGCGCCCCGTTGACGTCCCAGATGGTGAAGCCCGTCATGTCCCGCCCCTACAACATC
TCCGTGCTGGAGGTCAGCTCTGCCATCGTGCCGCCCAGCATCGGCTCCGTCGACAACAGCAGAGCTCGCGCTCCGGTGCC
TGCCCATACTAAGACTCCTGCGCCAGTACCGGCGCCGTCCAATAGCAAGAAGCCAAAGACGGAGGGAGCCCCCACCCCTG
CTCCTGCCCCGTCCGACGACGATTCTAGCGCTGACGCACCTGCCGACGCGGACGGGCCCGACGCGGATGGCCCGGCGGCG
GATGGGCCCGACGCGGACGGCCCCGATGCGGATGCGCCGGCAGATGATGAC---GACAAGAGCAGCGACGACACCGGGGA
CGCTGCGGGCAGGGTGGTTGCCCGTGCAAGTCTCGGTATCGTGGCGCTTCTGGCGATTGTTGTTTCGCTCTGATTTATGC
C-----CGTACAAGTAGGTTAGATACGGTTCAAAGCAGCAC-TATGATGGTGTGTAGGC-AAA-ACGTGATCGGAATGGC
TGTCAAATCGAAATTAC-----CAAGAGAAGGCACACTGTCAGGATGTGCGAGATAGGAGGGA-----------------
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-----------------------------------------------------------------CGCCGTAGGCGATTT
ACTGCTCAGTATCGTTTGGTGCCTAGTCGAGTGTGTGTCACCTATTTAGTTCTGTAGGA---------------------
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>SNPs
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---------------------S----------------------------------------------------------
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-----S--------------------------------------------------------------------S-----
-----------S--------S------------------------------------S----------------------
-----------------------S------------------------S-------------------------------
--SS-----------------S--------------------------------------------------------S-
-----------S--------------------------------------------------------------------
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------------------------------------------------------------S-------------------
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--------------------------------------------------------------------S-----------
------------------------------------------------------S-----------------S-------
--------SSSSSSSSSSSSSSSSSSSS-----------------S-SS-------------------------------
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-------S-------------------------------------------------------S----------------
---------------------------------------------------------------S----------------
----------------------------------------------------------------S---S-----------
------------------------------------S-------------------------------------------
---------------S----------------------------------------------------------------
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--------------------------------S-----------------------------------------------
-----S--------S-----------------------------------------------------------------
-----------------------------S--S--------------------------------------------S--
-----------------------S-SS-----------------------SSSS--------------------------
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--S----------------------S---------------------------------S--------------------
-----------------SSSSS-----------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_2492
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------------------------------------------------------------------------GTGATCGG
ATCTGAGCACCC--------------------------------------------------------------------
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>reverse_3988
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-------------------------------------------------------------------ATGCGAGCACCAG
GATTTGA-------------------------------------------------------------------------
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