>input_sequence_66485
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----------------------------------------ATGGCCAACACAAAGAGAAAGGGAGGCAGCTCGGGCTCTC
ACAAGAAGAAAGGACACAAGGTAGCCACTGCCAATGGCACGCTAATGACCAT----------------------------
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GAAGCTGCTGGTGGACACCAAGGCCCAACGCGTGGTCTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCC
TCCTCACCTTGCCAGTGGGCACGGTCGTCAAGCTTCTGGGGACCG---ACACCATGGTCGGCAGCGTCGGCAACCTGTAC
GGCAGCGTCGAGAAGCTCGACGACACCTACATCGTCCGTGAGAACGCCAAGAAAGCCCTGCTCGCCCCTGCTGCTGGTTG
CGAGAGCGGCAACGTTCTTCAGTTACCAGAGGCGGAGGCACCGGAGACCGATCGCT---TTTTCCGCT------GTAGCT
CCTTCTACTACTCCGACTGCTACAACAATGTTACCAAGGTAAACGGTACTCCATGCTCGCATTGCAAGAATAGCATGGG-
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------------------------------GACGGAGATGCAGCTTGTGGTTCCGACCGCTTGCTCCGATGGTGGCGCGG
TGTCAGCTGCTGCAGGCA---CT---------GGGTTTGTACAGGGGATCGTGACGTACACGGTGATGGACGACCTGAAG
GTGTCGCCCATGTCTTCCATCTCTGGGATCAC-------CATGCTCAACACGTTTGGCGTCACGGACATCGGGTCGCTCC
AGGAGAAGACCGTGCAGCTTGGCTACGAGGAGGT---TAACAAATCAATCCCTGGAAC---------AACTCAATTATAG
TTTTGATTAA-AAATGTAATTCCTACCGTAATCAACATTC-----------TTGCCATACCAATGTGCAGGGACTGGAGA
TACTGAAGGCGTCGCTGCAGTCAAAGACGGTTCTCACTGACGTCTTCCTTCCGAAGAAGC---GCAAGGGGTGA------
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>chr3B_1_TraesCS3B01G104800
ACCAAACACTTGCACAATTCCGACCGTGAAACGCTTGACACACATGATAGCTTGACTCTCACCCATGGCCAAGTGGTCAT
CAACTCGATCCACCGGAATACCGTATTACAACATAAGCAAAGCGGCTGTCATCTTTTGAAAGGTGTTATGCCCGAGTTCT
CCGGCGGCATTCCTCCTTTGCTGAAAAAACCGATCATGGCTTGCTAGTTTCTCCGCAATGTGTTTGAACAACTCGATGCT
CATCCTAAAACAACGCTGAAAGTAGGACCGGGGTATATGGGATTCTCCACAAAATAGTACCTCATCAATATGTTGTGGGC
ATCGATCCTGTCCCTCCACAATTTCTAAAGACCGTTAACTGAACCACCGTGCTTCGGCTTTTTGTTGACATGCATAGTTA
GGATCATTGCGACGTACTCCTCCTTTTGAAGATCAAATTCTTCATTGGAAGAATCGTGGGAGGAACTAATCTAGCGCGTC
CGTTGGAGATGTTCTTAGTGATTACATGAAAATAAAAGTATCGTGTCCGCACAATACTTTGGATCGGTTCAGACTTCAGA
GGCACACACGGCGCCAATATGTTTTCGATTCCAATCCCAGCGCGGTGCTCCGGTGCCTGCTTCTGAAAGCGAGGGGCGAA
CGCAAGACGCACGCAACACACGCTCCATCTCTCTAGCTTCTCTTCCATCTTTTAACACAGTTATTAAGTTAATGCAGCTG
CATCGATCGTAGTAGTAGTATGAGTAGTATGGTCTATTGGTCTTTCCAATATTTCATCTTCATCTTTCCCAAGTTCCACG
ATGAGCATGCATATGCGATTATGCATGGGCATCGAGAGCATTGCGCTAATAAACTCTCCACGCGTGCTGGGTTAAATCAA
TTCCCCAAAAATCGTCGCACAAGATTCCCCCATGTATATATACCCGATAGGAGAAGAACCACACCGTCCTAAAAGTGCAT
CCAAAAAACAGTCACTACTCACTGCATAGCCCGGCTTCAGATGGCCAACACAAAGAGAAAGGGAGGCAGCTCGGGCTCTC
ACAAGAAGAAAGGACACAAGGTAGCCACTGCCAATGGCACGCTAATGACCAT----------------------------
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GAAGCTGCTGGTGGACACCAAGGCCCAACGCGTGGTCTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCC
TCCTCACCTTGCCAGTGGGCACGGTCGTCAAGCTTCTGGGGACCG---ACACCATGGTCGGCAGCGTCGGCAACCTGTAC
GGCAGCGTCGAGAAGCTCGACGACACCTACATCGTCCGTGAGAACGCCAAGAAAGCCCTGCTCGCCCCTGCTGCTGGTTG
CGAGAGCGGCAACGTTCTTCAGTTACCAGAGGCGGAGGCACCGGAGACCGATCGCT---TTTTCCGCT------GTAGCT
CCTTCTACTACTCCGACTGCTACAACAATGTTACCAAGGTAAACGGTACTCCATGCTCGCATTGCAAGAATAGCATGGG-
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------------------------------GACGGAGATGCAGCTTGTGGTTCCGACCGCTTGCTCCGATGGTGGCGCGG
TGTCAGCTGCTGCAGGCA---CT---------GGGTTTGTACAGGGGATCGTGACGTACACGGTGATGGACGACCTGAAG
GTGTCGCCCATGTCTTCCATCTCTGGGATCAC-------CATGCTCAACACGTTTGGCGTCACGGACATCGGGTCGCTCC
AGGAGAAGACCGTGCAGCTTGGCTACGAGGAGGT---TAACAAATCAATCCCTGGAAC---------AACTCAATTATAG
TTTTGATTAA-AAATGTAATTCCTACCGTAATCAACATTC-----------TTGCCATACCAATGTGCAGGGACTGGAGA
TACTGAAGGCGTCGCTGCAGTCAAAGACGGTTCTCACTGACGTCTTCCTTCCGAAGAAGC---GCAAGGGGTGAAGAATT
TCTGAGCATCCATGCATGCGCCGGTTCG---GCCTTCGCATGGTGTCTTGTGTTCACCGGAGCATCCTTGGCCTCGTTGT
TATCTTTCCTGGTGTCCTAGCTTATTTCGTTCAGTTCGTCTGTGTCAGTGTC-AATGTAACAGCTG---TTTGGGGAGTT
CGTCGTCCGTGTTACCTTTTGAAGTGTCCGGTTTGTTTCCGTTGTCTAGTCCGTTTGT-CGGTTTAAATGTCGTAATTTG
GAACTCTCTTGTCTGGTTTGAAGAAATGTTTGGAATCGCCTTATTTGGATGGAATGATGCTTTAGTAGTTAGTACTACCC
----------ACTGCTAATCTGCTAACTCTACTTGCCAACCTAATACTCGTCCACCAGGAGATCTCACTATGGGAAATCA
ATTTTATGGCGAATGTCAATTACAGTAAGTAAACACTTTACTGAGT------GTTGGTAAACGTAAACGACAGATGGGCT
ACTTACCGTATATTTGCAAGAATCGTTTCTTGAGTGTGTCATGTGTTAGCGACAATCGGTGAACTTTTATGTACACTTGG
TACAGATGGGCTACTTACCGTATACTTGCCCATCGTCACCATCCATGCATGCAACAGAACATGTCTAATCAGCCATGAAT
TCTCCACCTAGTAAGGTTTCCAAAAAGAAGCAAAGCCATTGACCATAGA---ATGCACCTTGTGTTTGCATCCTCTTTGA
TGCTCCAATTGAAGCCAATAAAATACACCCTTTGTCGAAGAAAAA-ATCATTGACTATAGAAGCAATGTGTGCTCCGTCT
AGTTCGGTCCATCATGTTGCCCATTAGTTCTTTTTGTCCG-----ACCTAGTAAAATACATTTCACCGTCCATCTTCCAT
CAACCACAATCTACCAAGTGTTTTTATCCCCGGGGGGAGGGAAATATTGTATACCCCTAGGCAAACCTAGGAACGAGGCA
ATACAATTCCTTATGGCCTCATTCGGTTTGAAGCATATTTACAGGAAAAACATAGGAAGGAGGATCT
>chr3B_1088
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-----------------------------------------------ACCAT----------------------------
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GAAGCTCCTGGTGAACTCCAAGACCCAGCGCGTTCTGTACGCTGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCC
TCCTGACCTTGCCGGTCGGCACGGTCGTCAAGCTTCTGAGCACCG---ACACCATGGTCGGCAGCGTCGGCAACCTGTAC
GGCAGCGTCGAGAAGCTCGACGACACCTACATCAGCCGTGAGGACGCCAAGAAAGCCCTTCTCACCCCTGTCGCTGGTTG
TCAGGGCGGCAAGCTGCTCCAGCTTGAGGCAGC---GCCGCCTGAGTCCCATTGCT---TTTACCGTTGCGACAGCTACA
TGCACAATTACCCAAACTGCAGAAACTACGTGACCAAGGTAAGTGGCTCGACGTGCAAGGGTTGCAACTCAGGGTGGACA
CGGTCCGAGCCGGTCCGGTCCCTGACCGAGCCGTGCTTTGGACCGGCCACGACCGGTCCGGACCGGACCGGACCGAAGTG
CCCAGCGGGCCTATTTCCCTGGACCGGACCGGCGAGGAGAAAGCTCGGTCAGGACCGAGGGACCGAGCGATGGAGGGGGA
ACGTGAGCTGCGTGTGTGCCTTGCGCCGGCGTGCGTTCGTCGTCGTGCCCTGTCCTAAAGATCAACTACTCCGGCTGCTT
GCTGCACACGAAGAGGCAGTTCATCTATGGTAGCATCTCTGCTAACATCAAGCTCGTCCTGGAGAACTCCGCCGCCCGTC
GGCACCGTTACCGTCAGCACATCGGCGCTTCCAGATTGAGATTGCTAATCAGCTTGTACTGCAGGACGGCGTCAAGTAGG
TGCTTTCAAGAGGTATGTGCATCGGCGCTTCCAGTTTCAGATTGCTAATCAGCTTGTACTGCATACAATTCTAACTGTAT
GTGCATCAATTAATTGCCAAATTCAGACATTGGGACAATCATGACGAGATCAACTTCCAGTTCATGGGGAACAAGACAGG
GCACACCAACATGTGTGTGTTCTCCGACGTGTTTGTCTGCACCAGAGGTGCCCTTGGAACGAACCCACGCGAACGAGAGA
TTGCTCAAGAAAAAAAAGGAAGATACAGGTGTTTTGCGCTGCACAAACTTTAGACCTTTTCTGTTCTATTAGTCAGACTT
ACAGAACGGGAAATAAGGCTTCGTGGCCCCTGACTTTGTGTCGTGATGATCCACAACACTGGTGCCGTTCCACGAGCAGA
CCGACGAGGCGCGAGTCTGGCTCCAGGCAGTTAGACCCGCGAGCTAAACTAGCTAACAGAAGGAAAGTGTTCGAGACTAA
CCTGACGAAAAACCAAAGTGTTAACTGAACTAACTGAAAACGTGACAGGAGCTTCGGATTTATTCAAGAGTGTTCGCCGA
CATGACGGGCAAAGAAGGAGATACAGTTCGTGCCCTGCGTGCCTGCGTGCACAGGTTGCACTGCTTCATCACGTCAGTAA
GGCTGGGACTTGACGACTGCGACAAAATTGATGGCGGCCTTGGTCGGGGAAGAGAGGATGCGTGCGTCATGTAGGCGGCG
TCTGGACCAATTCATCGCACAGGCAGGAAGATGGCGATGCGGCGGTGCTCGGAGACGCGGTGGTTCGCTCAGGGGTTGCC
GGTGGCCGTGACGACGAGGATAGAGGAACGGAGGAGGCGGCGCTGGAGGGGCAGAACGAGGAAGGAATCGAGCCAGTGGG
GAATGGAACGAGGGGAGGGGGTCGCTCGGCTCGGGGTGGGCCTCGATGGCTTATCTGTACACTTGATGGGCCTTGCCACC
AGCGGTCCGCTCGGTCAGCCCGGATAAAGACCGGACCGGACCGAAAAAATTTCGGTCTCCTTTTCTGGGCTCGGACCGGC
TAGTTTTTCTGTCGGGCCTGGACCGTACGGGCCGGTCCTAAACGGGCCACGAGCGGGCCGGAAAGCCCGCTCGTGCCGTC
CAGGCTGAGTTGCAACAGTAAGATGACCACGCAGCTGGTGGAGGTTGTGGATCCGGCCGCT------------GGCGCGG
TGCCCTCTGCTGCTGCTGGAGCT---------GGGTTCGTGCAGAGGATCGTGACGTACACTGTGATGGACGACCTGAAG
GTGTCGCCTATGTCTTCCATCTCTGGGATCAC-------CCTCCTCAACAAGTGTGGGGTCACGGACATCGGCTCTCTCC
AGGAGAAGACCGTGCAGCTTGGCTACGATGAGGT----AACAACCCAACCCCTGCTAC---------AAATCAATTATTT
TGATAGGG---AAAAGCTATTCCTGCCCGTACCAACATTG-----------TTGTCATTCGC-TGTGCAGGGGCTGGAGA
TACTGAAGGCCTCGCTGCAGTCAAAGACGGTTCTCACTGACGTCTTCCTTCCGAAGAAGCAGCGCAAGGGGTGAGGAATT
TCCGAGCATCCATGCATGCGCCGGTTCA---GCCTTCGCATGCTGTCCTATGTTCACCGGAGTGTCCTTGGCCTCGTCGT
TATCGTCTGTGGTGTTCTAGCTTATTTCGTTCAGTTCGCCCGTGTCAGTGTTTAATGTAACAGCTG---TTTGGGGAGGT
CGTCGTCAGTGTTGCCTTTTGAAGTGTCCAGTTTGTTTCCGTTGCTTAGTTTGTGTGTCTGGTTTAAATGCTGTAATTTG
GAACTCTCTTGTCTGGT---------------------------------------------------------------
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>chr3D_1088
TAGGAACGAGGCAATACAATTCCTTATGCCTCATTCGGTTTGAAGGATATTTACCGGAAAAAACATAGGAAGGAGGATCT
CATACGAAAATTTCATGTAGATGCATTCGGTTTGTAGGAAGTGTGTACGTGAATTTCGCAAGAATAGTACTCATTTCCTG
TGTTTTTATAGGAATCTACACATCCACGCAAAGCTTATTTTTTATGTAGGAACGAGGCAAAAACAATTCTTTAGGATGGC
AAGTGCCATCTTCTCAAATTCCTATACTACTTCTAATTCCTACGTTTTAAAGGAATACTTTCTTGCATTTGGTTCGTAGG
AAACGGGCACATGAATTCCTTAAGAATACTATTCATTTCATGTGTTTTGTGGGAAACTCATCCACTCAAAGCTTTTTCTT
TTTGCGTAGGAACGAGGCAATATAATTCCTTAGGATGACAAGTGTCATCCTATCATATTTTTGTACTAGTTCTGTTTTCT
AGGTTTTGATGTCCAGCAAACTGGCCCAGGGAGCGGGCCTCCGTGAGGACGTGTGGGAAGGACCCCAACGCGTGCTAGAA
ACGGAGCACGACGAGTTGGGGCTCGCGTTTATCCCCGAAGAAATCAACGCCGCTCTCATGGGGATGAAAGCGGACACAGC
ACCGGGGCCGGACGGATGGCCGGTTGCTATGTTTAAGCGATTTTGGCCCACCCTTAGAGAGCCGATCTTCGCGATATGTG
ACGGTTTCATGCGGGGCCAGGTAGATATTTCCCGCCTTAACTTTGGAGTGCTCTCGCTTATTCCGAAGGTTCAGGGGGCT
GACAACATCAGACAGTATCGCCCGATTGCGTTGATTAATGTGCCTTTTAAGATCTGCGCCAAAGCGTGCGCTACGCGATT
AGGTCCGATTGCCCACCGCTCGATCCAGCGTAACCAATCTGCGTTTATCCGTGGGCGTAATATCCTGGAGGGTCCGCTCG
CTCTCTAGGAAATCATCCACGAGCTTAAACGCACAAAGGAACCAGCCGTTCTGTTGAAGCTGGACTTCGAGAAGGCGTAT
GACCGGGTTAATTGGGATTTCCTTCGCCAAGTGCTCCTGGGTCGTGGTTTCTCCGCGGTGTGGGTTCATCGCGTCTTGCA
ATTGGTCTCGGGTGGCCAAACTGCAGTGTCGGTGAACGGAGAAATAGGGCATTTCTTCAGGAACAAACGCGGCCTTAGGC
AGGGTGACCCGATGTCGCCGCTTCTGTTCAACTTTGTTGTTGATGCGCTGTCCGCTATGCTATCAAAAGCAGCGGCGGCT
GGCCATATCCAAGGGCTGGTAAGCCATCTCATTCCAGGGGGAGTGACCCATCTGCAATACGCAGATGATACACTTTTGAT
GTTTCGCCCGGACCTCCAGAGTATAGCCTCGGTCAAGGCGATTCTCATTAGCTTCGAGCTCATGTCCGGTCTCAAAATCA
ACTTTCACAAGTGTGAGTTGATGGCGATGGGGGTGGAGCCGGACGAGGGTAGACGTATAGCGGATTGGTTTAATTGCAAA
GTTGGCAAATTTCCCTTTACGTACCTCGGGCTCCCGATTGATACCAAACGACCCACGATAGAGGATTGGGATCCGCTGTG
CGGCAAGGTGCGCGGGAGGGTGTGCCCCTGGCGAGGGAAATTCCTCTCCAAGGCGGCTAGACTCATTCTTACGAATTCAA
GTCTGTCTTCCTTGCCAATGTTCGCCATGGGTTTGTTTCTTCTCGCAGAAGGGGTGCATGCGAAGTTCGACACGCCCCGA
GCCAAGTTCTTTTGGGAAGGAACCGGCCCAAACCGTAAATATCATATGGTTAAATGGGCCTCGGTGTGTCGGCCCAAGGC
CTCGGGGGGCCTCGGGATCACCAATTCCAGACTCTTAAACATCGCCTTGATGTGTAAGTGGATTTGGAAAATCACTCAAG
GTGCTTCAGGCCTCTGGGTTGATCTCCTCAAGGCCAAGTACTTCCCAGGAGGGAATTTTTTCGATGGGCGGGCACGGGGC
TCCCCCTTCTGGAACGATTTGCAGTCGGTCAAACCGGCGTTTGCCATGGGGGCGAAATTTTCGATCGGGAACGGACGCTC
GACCCGTTTCTGGACGGATAGGTGGCTGGGAGCCCAACCTTTATGGATGGAATTCCGGGATTTGTACGAGCTGGCCGTCG
ATCCATCCATCACGGTGGCGGCTGCGCTCGCGGCTAGTCCTCCCGTGATCTATTTCAAACGAGAACTAAACGGGTTAGAG
CAGTCCAACCTCTTGGCCCTGATGCATCTTATTAACCCGATCACCCTTCAGGACGAACCAGATACGGTCAGCTGGGCGCT
TACCAGTTCGGGCAAGTTCTCGGTTAACTCTCTGTACCGTAGGTTGTGTCGAGGGACGGCACAGCAGGCGTTCGCGGGGC
TATGGAAAGCGCAGTTGCCCTTGAAGATCAAACTCTTCATGTGGCAATTGTTTCGCGATAAGTTGCCGACTTCCTTAAAT
GTGGCCAAACGCAATGGGCCGGCCGCTGGCCCCTGCGCGTTGTGTGGGGAGCCTGAGGACGCCAGCCATGCGTTCTTCAG
ATGTCCCCTTGCTAGATTTGCTTGGAGCGCGGTCCGGGCGGCGGCTGGTGTTCAGTGGGATCCCAGATCGGCCGCAGAGC
CTACTCACCTTTTAGATACGATACACGGGAGTGCTAAACGGGTGATGTGGAGATGTGTCGGGGCACTTCTCTGGTCTATA
TGGCTTACTAGAAACAAATTTACTATTGAGGGTTGCTTCCCTTCGCATCCGGCTAACATCCTCTTCAAATGTAACCTTCT
ATTGCAGCAGTGGAGTCCGTTGGGGAGGCGCAGGGATACTGAGTTGACCAACACCGCTCAACAACGTTTGCTGCAAGTCT
ATGTGATGGCTAGGGAGCCTTGACTATGGTGATGTCCATGGTCCCTTTTGTTACTTGACGAGCCTGCGTGCTCTGTACGG
GCTATGCCCTGTAATGTCTTTGGTTTGGTTGAGCTGCGCATGAAACTTCCGATGATCCTTTGGCGCTGGCCGGATAGGCC
TGTGGGGTTGTGTTATGACTTGTTTCACGCTGCCGTTGTGGCTTTATTAATTTAAAGCCGGACGCGTCCGTGCGTCTTCG
TTCTAAAAAAAAATGTCCAGCAAACCGAATAAGCTCATAGAGTGGATGCGATAGTTGTCATATTCAAAAGAACTTTCCAT
AGGAATTTTGGATCCTGTGACATTGTAGTGTAGGAAAGCATTCCATAGGAATTTTGGAGGATCCATTCCTTTGAACCAAA
CGAACTATAAAGGAAAAAATCATATGGAATACAAAGTTCCTTTGAAAATTCTTTGAAGCAAAGGCCCTTAGGCTGAGGGC
GTCCGGATCAAATCTCATGCGTTTCAACCATCCATCAGCATGCACGCGTGCCAGAATGCGAGTAATAAATGTTGCATCCT
ACTATATGATCTTCCCAATGGCCTTTCAATTGAACCGTCGCTTTATCTTCCCAATGAGCTAGCATGCGCGCTGCTGCGCA
TCGAGCAAAGCCCAAAAATGACTGCAAGCAATAAATCTTCGAAAGTTCCCCATGAACTGAACGGCGCATCAATTGCATTC
ATATTCCCCATGAAGCCCAAGGTGCTTAGCTCTGTGTATAAATACGACTGTTACGAGCATCTTTCTTGTATCGCCCACTG
CAGCCTCCATACTCCATAGCTACTCCACACAAACTCAGGTCGATGGCTCCCAAGGAGAGCACCAGCAGCAAGCTTACCAT
GAAGCTCCTGGTGAACTCCAAGACCCAGCGCGTTCTGTACGCTGAGGCCGGCAAGGAAGTCGTCGACTTCCTCTTCTCCC
TCCTCACCTTGCCGGTGGGCACGGTCGTCAAGCTTCTGAGCACCG---ACACCATGGTCGGCAGCGTCGGCAACCTGTAC
GGCAGCGTCGAGAAGCTCGACGACACCTACATCAGCCGTGAGGACGCCAAGAAAGCCCTTCTCACCCCTGTCGCTGGTTG
TCAGGGCGGCATGCTGCTCCAGCTTGAGGCAGC---GCCGCCTGAATCCGCTTACT---TCTACCGTTGCAACAGCTCCA
TCCACAGCTACCCAAACTGCAGAAGCTACGTGACCAAGGTAAGTGGCTCAACGTGCAA----------------------
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------GAGTTGCCACACTAAGATGACCACGCAGCTGGTGGAGGTTGTGGATCCGGACGCT------------GGCGCGG
TGCCTTCTGCTGCTGCTGGAGCT---------GGGTTCGTGCAGAGGATCGTGACGTACACTGTGATGGACGACCTGAAG
GTGTCGCCCATGTCTTCCATCTCTGGGATCAC-------ACTCCTCAACAAGTGTGGGGTCACGGACATCGGGTCGCTCC
AGGAGAAGACCGTGCAGCTTGGCTACGATGAGGT----AACAACCCAACCCCTGCTACGTACTGTACAAATCAATTAGTT
TTGATGGGAACAAAAGCTGATCCTGCCCGTATCAACATTC-----------TTGCCACTCG-ATGTGCAGGGACTGGAGA
TACTGAAGGCGTCGCTGCAGTCAAAGACGGTTCTCACTGACGTCTTCCTTCTGAAGAAGC---GCAAGGGGTGAAGAATT
TCCGAGCATCCATGCATGTACCAGTTCG---GCCTTTGCAAGCTGTCTTGTGTTCACTGCAGCCTCCTCGGCCTCGTCGT
TATCGTCCGTGGTGTCATAGCTTATTTCGTTCAGTTTGTCCGTCTGTGTGTT-AATGTATCAGCTACTATTTGGGGAGTT
CGTCGTCAGTGTTGCCTTTTGAAGTGTCCAGTTTGTTTCCGTTGTCTAGTTTGTGTGTCCGGTTTAAATGCCGTAATTTG
AAACTCTCTTTTCTGGTTTGAAGAAATGTTTGGAATCGCCTTATTTGGAAGGGATGATGCTTTAGTTGTTATTAGTACTA
CCAACTACCAACTGCTAGTCTGCTACCTCTACTTCCCAGCCTAATACTCATCCACCAGGAGATCTCACTATGGGAAATCA
ATTTTATGCCGAATGTCAATTACAGTCGGTAAGCACTTTACTGAGTGTTACAGTTGGTAAACGTAAACGACAGATGGGCT
ACTAACCGTATATTTGCAAGAATCGTTTCTCGAGAGTTTCATGTGTTAGCGACAATCGGTGAACTTTTATGTACACTCGG
TAAAGCTTAATACGCAACCATTGTCATCGTC----------------CATGCAACAGAACATGTCTAATCAGCCTTGAAT
TCTCCATCTAGCAAGGTTTCC-AAAAGAAGCAAAGCCATTCATTGACCATAGATGCTCCTTTTGTTTGCATCCTCTTTGA
TGCTTCACTTGAAGCCAATAAAATTTGCCCGTTGTCGAAGAAAAAAATCATCGACCATAGATGCAATGTGTACTTCGTCT
AGTTTAGTCCATGATGTTGCCCATTAGTTCTTTTTTGTCCCAGACACCTAGTAAAATACGTTTCACTCTTGGTCTTCCAT
CAACCACAATCTGCCAAGTGT-----------------------------------------------------------
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>chr3A_1088
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-----------------------------------------------ACCAT----------------------------
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GAAGCTCTTGGTGGAGTCCAAGACCCAGCGCGTTCTGTACGCTGAGGCCGGCAAGGACGTCGTCAACTTCCTCTTCTCCC
TCCTCACCTTGCCGGTGGGCACGGTTGTCAAGCTTCTCACCACGGAG---ACCATGGTCGGCAGCGTCGGCAACCTGTAC
GGCAGCGTGGAGAAGCTCGACGACACCTACATCGGCCGTGAGGACGCCAGGAAGGACCTGCTCACCCCTGCTGCTGGTTG
CCAGAGTGGCAAGCTTCTCCAGCTTGAGGCGGC---GCCGCCTGAGGTCCCTGACT---TCTTTCGTT------GCAGCA
GGCACAGCTACCAAAACTGAACAACCAACATTTCCAGGGTATATGGCACTACCTGTCA----------------------
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------AAGTTGCGGCAATGCGATGACGTTGAAGCTGGTGGAGGTCGTGGATCCGGCAGCTGCCTCCGTTGGTGGAGCGG
CGTCTGCTGCTGCTACAGGCGCG---------GGGTTCGTGCAGGGGATCGTGACGTACACGGTGATGGACGACCTGAAG
GTGTCGCCCATGTCTTCCATCTCGGGGATCACCCTTGACCCTCCTCAACACGTTTGGGGTAACTGACATCGGCTCGCTCC
AGGAGAGGACGGTGCAGCTTGGCTATGATGAGGTAATTAACAACTCAACCCCTGCTAC---------AAATCAATTACTT
CTAGATATTCGATAAATAAAAAAGAGATACTCATGCCTCATCATCGACGTGTTGTAATGCGAATGCCCAGGGATTGGAGA
TACTGAAGGCGTCTCTTCAGTCAAAGACGGTTCTCACTGCCGTATTCCTTGCCAAGAAGC---GGAAGGTGTAAAGAATT
TG-GAGCATCCAGGCATGCATGTGCCAGTTCGCTTTTGCATGCTGTCTTGTG----------------------------
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>chr3D_1090
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-------------------------------------------------CAT----------------------------
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GAAGCTGCTGGTGAACAGCAAGTCCCAGTGCGTGCTGTACGCCGAGGCCGGGAAGGACGTCGTCGACTTCCTCTTCTCCC
TCCTCACGCTGCCGCTGGGCACGGTGGCCAAGCTGATCGCCGACGACAACCCCGCGGCCGGCTCCGTGGTCAACCTCTAC
AGCAGCGTCGACAGGCTCGACGACACCTACATCTGCCGCGACAACGCCAAGGACGACCTGCTCAGGCCCGCCGGCGGCTG
CGAGAGCGGGAAGCTGCTCCAGCTTCCGGAGGCAAAGGCGCCGCAAACCACATTGCAAATCTTCCGCT------GCACCG
GCACATACTCACCCAACTGCAGGAGCTACGTGACCATGGCAAGTGGGACGCCGTGTGG----------------------
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------AAGCTGCGGCGCAAGGATGACGACTTGGGCGCAGCTT---------------GTTGGCTCCGTCGGCGGCGCTG
GGTCGCCTGCTGCTGCGGCAGGGGCCGCCGCCGGGTTTGTGCAGCGGATCGTGACGTACACGGTGATGGACGACCTCAAG
ATCGCGCCTATGTCCACCATCTCCGGGATCAC-------CATCCTCAACACCTTTGGCATCACGGACATCGGATCTCTCC
AGGAGAAGACCGTGCAGCTTGGCTACGCCGAGGT----------------------------------------------
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>chr3A_1090
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-------------------------------------------------CAT----------------------------
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GAAGCTGCTGGTGAACAGCAAGTCCCAGCGCGTGCTGTACGCCGAGGCCGGCAAGGACGTCGTCGACTTCCTCTTCTCCC
TCCTCACGCTGCCGCTGGGCACGGTGGCCAAGCTGATCGCCGACGACAGCCCCGCGGCCGGCTCCGTGGTCAACCTCTAC
AGCAGCGTCGACAGGCTCGACGACACCTACATCTGCCGCGACAACAACAAGGACACCCTGCTCAGGCCCGCCGGCGGCTG
CGAGAGCGGGAGGTTGCTCCAGCTTCCAGAGGCAAAGGCGCCGCAAACCACTCTGCAAATCTTCCGCT------GCACCG
GCACCTACTTACCCAACTGCAGGAGCTACGTGACCATGGCAAGTGAGACGCCGTGTGG----------------------
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------AAGCTGTGGCGCAAGGATGACGACTCAGGCGCTGCTT---------------GTTGGCTCCGTCGGCGGCGCCG
GGTCGCCCGCTGCGGCGGCAGGG---GCCGCCGGGTTTGTGCAGCGGATCGTGACGTACACGGTGATGGACGACCTCAAG
ATCGCGCCCATGTCCACCATCTCCGGGATCAC-------CATCCTCAACACCTTTGGCATCACGGACATCGGCTCGCTCC
AGGAGAAGACCGTGCAGCTTGGCTACGCCGAGGT----------------------------------------------
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>SNPs
SSSS---SSSSSS-S-SSSSSSSSSS--SSS-SS-S-SSSSSS-S----SS-SSSSSSSS-SS---S-SS-S-S--SSS-
--SSSSS-SSSSS-SSSSSSSS-S---SSSSSSSS--S--SSSS-SSSSSSSS---S-S---SSSSSSSSS-SSSSSSSS
SSSSSSSSSSSSSSS--SSS-SSSS-SSSSSSSSSSSSSS--SS-SSSSSSS-SSSSSSSSSSSSSSS-SSSSS----SS
S-SSSSS-SSSSSSSSSSSSSS--SSSSSSSSS--SS-SSS-SSS-SS-S-SS-SSSSSSSSSSS--S-SS---SSSS-S
-SSSSSS-SSSSSSSSSS-SSSSSSSS-SS-SSSS-SS-SSSSSSSSS---SSSSSSSSS-SSSS-S-S-SSSS-SSS-S
SSSS-S-S-SS---SSSSSS-SSSS--SSSS-SS-SSSSSSSSS-SSSSSS-SSSSSSSSSS-S----S-SSS-SSSSSS
S-S-SSS-----S-SSSSSSS-SS-SSSSSS-SSSSSSSSS----SSSS-SSSSSSSSSS-SSS-SSSSSS-SSS-SSS-
SSSSSS----S--SSSSSSS-S-SS--S--SSSSS-SS--SSSSSSS-S---S-SS-SSSSSSSSS--SSSS-SSS-SSS
SS-SS-S-SSSSSSS-SSSS--S-SSS-S-S-S--SSSSS-S--SSSS-SSSSSSSSSSSSSSSSSSS-SSSSSS-SS--
SSSSSS--S-SSSS-SSSSSSS--SSS-S-SSSSSS--SSSS--SSSSSSS-S--SSS-SSSS-SSSSSSSSSSSSSS-S
SSS-S---SSSSSS-SSSSSSSSS--S-SSS-SSSS-SSS-SS-SS-S-SS-S--SSS-SSSS-S-SSS-S-SSSSSSSS
SSSS--S-SSSS-SS-SSSSSSSSSSSS-SS-SSS-SSSSSSSSSS--SS-S-SSSSSSSSSS--SSSSSSSSSSSSSSS
-SSSSS-SS-SSSSS-S-S-SSSSSSS-S-S-SSSSSSSS-SSSS-SSSS-SSSSSS-SSS---SSSS-SSSS---SSSS
SSSS-SSSS--SSSSSSSSSSSSS-SS-SSSSSS-SSSSS-SSSSS----------------------------------
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----------------------S----S------S-S-------------------------------------------
-------------S--------------------------S---------------------------------------
----------------------------------S----------------------------S----------------
------------SS----S---S-S--------SS----S-----------------------------------S---S
S-SS-------S--S-----SSS-----S--------------S--S-----S---SS-SS------SSSSS-SSS-SS-
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--------------------------------S--S-S-----S------S----S-----S------S-----------
----S--------S-SSS----------------------S---------------------------------------
------------------------------------------S-------------------------------------
----------------------------S--------------S----S-----SS-------------S--------SS
--S-SSS-------S------------SSS----------------------------S-S-------------------
--------------------------------------------------------------------------------
--S---------------------------------------S--------------------S-------------S--
----S-S-S-------------------------------S----------S----------------------------
-------S-----S---------------S--------------------SS--S---------------S---------
-------------------------------------------------S--S-------------S----S--S---SS
-----------------S-------S--------S---S----------S------------------------------
--------S-----------------SS----S-----------------------------------------------
---S--------------------------S---S--S---------------------------------------S--
--S--S-SSSSSSSSS---S-SSS-S-SSS-SSSSSSSSSSSSSSSS---------------------------S-----
------S----S---------S------------------S-SSSSSS--------S----S------------------
----S--S----------------SSS---S--------------------S---S-----S---------S--S-----
----SS------S----------------------SSS-S-------------------S------SS-SSS--------
------------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_340
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ATCGATCCTGTCCCTCCACA------------------------------------------------------------
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>reverse_4127
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----------------------------------------------TACTCCATGCTCGCATTGCA--------------
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>forward_994
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--------------CTACTCACTGCATAGCCCGG----------------------------------------------
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>reverse_7135
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--------------GGCCTCATTCGGTTTGAAGC---------------------------------
