>input_sequence_66464
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----------------------------------------------------------------------ATGGACGCCG
CACGGATCGCGTCCCTTCTGCTCCTCCTCGGTACGCCTGCGAGTTCTTGGTTAGACGAAGTTCATCAGGTTGTTGCTGCA
TTCGCGCTGA-CGTACGCGTGTCTGCATGGTAACGTCTCCGCGCAGGGGTCGTTTGGTCACGCGCACAGCCCGGCGCCGA
GGCGGCCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTTCACGATCTGGCCGGCCACATTGTCCGGCAACAGCG
CCGCCGCCGTCGGGGGCGGCGGCTTCGAGCTCGCGCCGGGCGCCAACGTGTCGTTCCCCGGCCCGACGGGCTGGTCCGGC
CGGCTCTGGGCGCGCACCGGCTGCGTCGCCGCGGCCTCCGGCGCGTCCCTCGCCTGCACCACGGGCGACTGCGGCGGCGC
CGTGAGCTGCGCCCTCGGCGGCGCGCCCCCCGTCACGCTCGCCGAGTTCACCCTCGGGGGCTCCGACGGGAAGGACTTCT
ACGACGTGAGCCTGGTGGATGGGTACAACGTGGGCATCGGCGTGGCGGCCACGGGCGCCATGGTGAACTCCTCGACGTGC
GGCTACGCCGGGTGCGTGGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCCGGCAAGGAGGGCGCCCAGGA
GGGGAGGACGGTGGCGTGCCGGAGCGCGTGCGAGGCGTTCGGGACGGCCGAGTACTGCTGCACGGGCGCGCACGGCGGGC
CGGACAGCTGCGGGCCGACCAGGTACTCCAGGCTGTTCAAGGCGGCGTGCCCCGCCGCCTACAGCTACGCCTACGACGAT
CCCACCAGCACCTTCACCTGCGGCGCCGGAGCGCAGTACCTCATCACCTTTTGCCCCGCGCAGCAGTAG-----------
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>chr4A_1_TraesCS4A01G061200
TCCTCCTGACAGAAAATTTGCCTAACCAGCTGAGTATCCCAAGAGTTAGTGTATGGATCAATCAACTCCGCAACCCTAGT
CAGCAGGGTGCTTCCCCTCCTCGTTCTTGGGTACCTGACCGCACCAGAAGGAAGCCATGGGTCCTGCCAGATCCTAATAT
TGTCGCCATTACCAACTCGCCACACCATCCCCTCCTTAATGACCTCTACTCCCTGAAGGATGCTCCGCCAAACATAGCTT
ATGCCAGGAGCAATTGTAGCAGAAAGAATGTCACCGTCCGGATAATACTTGGCTTGTAGGACACGAGCGACAAGAGTATA
CTAGCTCCAGGTGCAGCCATCAATCCCCCGCTCCGCGTTATAATTTTATAGGTGATCATTTTGCTGTTTCGTCGCGACGA
TGGGCCGGCCCATTCGGGGGGCTGTATCTGTGCGGCGCGTGCGAATCGGACGCAAAGAGCGGCACATAGGAGGTCTCCGT
GTGAGCAGATGAGCTGTAGGCTTTTTTTGTCTACGGCGGACATGCTGGGCCCAGATGAGCTGAAGGCCTGCAACTAATCT
GCTCTAAATGTGTCTAGAAAAAATAATCTGCTCTAAATTGAAATCTGTTACTTTCGCAAAAAGAAAAGCATTGGAATCCG
TTACGCCTTTTAC-CGTACACAAATTGTCACGGATTTCTCGCCTGAAACTAAAGCACCACTACCAGCACCGCTACGGCAC
CTAAACTCGCGCGTACATGGGCGATGGC----ACGAGGTGGACACGACACCAGGCGTTAGTCGTGCGTCCCTCCAAACTC
TCAACGAACTCCGATATCTCCTCCCGAGTTCCCACCTAATGGCCTCCTCACCCCGT-CACGTCTGTACAAAGCGTA----
---------GTAGTATCTGCCGAATCACTTCACTAAT-----------TTTCCAGCTGCAGCTCCCACACCTTCCGTCCA
AGCGATCGATCGTCCGCTCCGCCGCCTGTCCAACGAGCTCCTCCTAGCTCGATCGAGGCCCGCCATTGCCATGGACGCCG
CACGGATCGCGTCCCTTCTGCTCCTCCTCGGTACGCCTGCGAGTTCTTGGTTAGACGAAGTTCATCAGGTTGTTGCTGCA
TTCGCGCTGA-CGTACGCGTGTCTGCATGGTAACGTCTCCGCGCAGGGGTCGTTTGGTCACGCGCACAGCCCGGCGCCGA
GGCGGCCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTTCACGATCTGGCCGGCCACATTGTCCGGCAACAGCG
CCGCCGCCGTCGGGGGCGGCGGCTTCGAGCTCGCGCCGGGCGCCAACGTGTCGTTCCCCGGCCCGACGGGCTGGTCCGGC
CGGCTCTGGGCGCGCACCGGCTGCGTCGCCGCGGCCTCCGGCGCGTCCCTCGCCTGCACCACGGGCGACTGCGGCGGCGC
CGTGAGCTGCGCCCTCGGCGGCGCGCCCCCCGTCACGCTCGCCGAGTTCACCCTCGGGGGCTCCGACGGGAAGGACTTCT
ACGACGTGAGCCTGGTGGATGGGTACAACGTGGGCATCGGCGTGGCGGCCACGGGCGCCATGGTGAACTCCTCGACGTGC
GGCTACGCCGGGTGCGTGGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCCGGCAAGGAGGGCGCCCAGGA
GGGGAGGACGGTGGCGTGCCGGAGCGCGTGCGAGGCGTTCGGGACGGCCGAGTACTGCTGCACGGGCGCGCACGGCGGGC
CGGACAGCTGCGGGCCGACCAGGTACTCCAGGCTGTTCAAGGCGGCGTGCCCCGCCGCCTACAGCTACGCCTACGACGAT
CCCACCAGCACCTTCACCTGCGGCGCCGGAGCGCAGTACCTCATCACCTTTTGCCCCGCGCAGCAGTAGTCCGGCCG---
--TTCGATTTTGGCTAGCAGTGTCGTTCGCTCATCGTTATGGTGTCTCGAT-------------------TTTTGGTTAG
--TATCGTTCATCCGAATTACTTACCAGATGTTTATTGGTTTGGTCGTGTCAATATGTATACTTTTGATTCATTATAAAT
TTAATTTCTAA---AAAAGAAGACGTATGCTTTTGATTCATCTGGACTTTGCACAAAATAGATGGATTTATTTGTCACAT
GGTTTGATGATTTTTTTCCTCATGGTCTAGTTTTTTTTTGAGCGGTTCCTCTTGGTCCAGTGCACTGCTTTTTTCTTACC
CCCTCTCTCTTAGTTTACAAGGCGTGCGCGTACCCCTAGATCGTCAATTTGACCAACCTAATACAAGTCATATATTACAA
AAAATATACCAATATAAATTTCAGATGTTCTATTTTCAAAAAGTATAATTTTTGTGTTATATAGTTTATATTAGGGTGAT
AAAATTGGCAACCTAAGTATACGCGTAGGACTTGTAAACTGTGACGGAGGGAGTAGACAAGTCTAATGCACTGCTTCCAG
AGATTTTTTG---------------------------TGCTTGTATAAATCCTGAGAAGAGAAGTTGGCACATGAACAAA
ACGAACGGGACGGGCCATCTCAGTCCATTCAACAAGGAAAAGGTTCAAAATAAATCTTCAACTTGTAGATGAAAGCTAAA
TCGAACTTACCTAAAAAAAAGTTAAATCAAACTTTGAACTCATAATCTCGAAAATTAGCACACCAAACTTTCTGATCCCA
ACCTATTTTAAATCTTGAGGATGTTTAACTGGTATTCGCTGTTTTGGCAAGGATAGTTGATGGGCTGGCTGGACATTAGG
ACGAATTGCACCGGCCCATTAACGCAGTTGCTTGCAGGCTCATTCGTTCTTTTTTATTTCCATTTTCGTGATGATAATTT
CTTCTTTTACATTTTCTTAATGATTAATGAAAATAAATATTTTTTTACGAACGCACTTGTCTTCTACTTCCTTCGTCCGG
AAATA
>chr4D_584
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-----------------------TAATCTGCTCTAAATTGAAATATGTTGCCTTCGCAAAAGGAAAAGCATTGAAATCTG
TTACGCCTTTTTATCGTACACAAATTGGCACGGATTTCTCGCCTG-AACTAAAGCGCCACTACCAGCACCGCTACGGCAC
C-AAACTCGCGCGTACATGGGCGATGGCTGGCACGAGGTGGACACGACACTGGGCGTTAGTCGTGCGTCCCTCCAAATTC
TCAACGAACTCCGATATCTCCTCCCGAGTTCCCACCTAATGGCCCTCTCACACCGTACACGTCTGTATAAAGCACCATTC
AAAAAAGGCGTAGTATCTGCCGAATCACCTCACTAAT-----------CTTCCAGCTGCAGCTCCCACACGTTCTGTCCA
AGCGATCGATCGTCCGCA-----GCCTGTCCAACCGGCTCCTTCTAGCTCGATCGAGGCACGCCATTGCCATGGAAGCCG
CACGGATCGCGTCCTTTCTGCTCCTCCTCGGTACGTCTGCGAGTTCTTGGTTAGACGAAGTTCATCAGGTTGTTGTTGCA
TTCGCGCTAA-CGT----GTGTCTGCATGGTAACGTCTCCGCGCAGGGGTCGTTTGGTCACGCGCACAGCCCGGCGCCGA
GGCGGCCGGCACGACGGTCTTCACGCTGCGCAACAACTGCACCTTCACGATCTGGCCGGCCACATTGTCCGGCAACAGCG
TCGTCGCCGTCGGGGGCGGCGGCTTCGAGCTCGCGCCCGGCGCCAACGTGTCGTTCCCCGGCCCGACGGGCTGGTCCGGC
CGGCTCTGGGCGCGCACCGGCTGCGTCGCCGCGGAAACCGGCGCGTCCCTCGCCTGCGCCACGGGCGACTGCGGCGGGGC
CGTGAGTTGCACCCTCGGCGGGGCGCCCCCCGTCACGCTCGCCGAGTTCACCCTCGGGGGCGCCGACGGGAAGGACTTCT
ACGACGTGAGCCTGGTCGACGGGTACAACGTGGGCATCGGCGTGGCGGCCACGGGCGCCAGGGTGAACTCCTCGACGTGC
GGCTACGCCGGGTGCGTGGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCCGGAAAGGAAGGGGACGAGGA
GGGGATGACGGTGGCGTGCCGGAGCGCGTGCGAGGCGTTCGGGACGGCCGAGTACTGCTGCACGGGCGCGCACGGCGGGC
CGGACAGCTGCGGGCCGACCAAGTACTCGAGGCTGTTCAAGGCGGCGTGCCCCGCCGCCTACAGCTACGCCTACGACGAT
CCCACCAGCACCTTCACCTGCGGCGCCGGAGCGCAGTACCTAATCACCTTTTGCCCCGCGCAGCAGTAGT-----CG---
--TTCGATTTTGGCTAGTAGTGTCATTCATTCATCGTTATTGTGTCTCGATTTTTTTTACGGTGTCTCGATTTTGGTTAG
--TATCGTTCATCCGAATTAC----CAGATGTTTATTGGTTTGGTCGTGTCAATATGTATGCTTTTCATTCA--------
TTAATTTAATTTCTAAAAAGAGAAGTATGTTTTTGATTCATCTCGACTTTGCACAAAATAGATGAATTTATTTGTCACAT
GGTTTGATGAATTTTTTTCTCATG--------------------------------------------------------
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------------------------------------------------------------GTCTAGTGCACTGCTTCCAG
AGATTTTCTTTTTTTAGAATCTCCAGAGACTTTTCTCTGCTTGTATAAATCCCGGGAAGAGAAGTCGGCCCATGAACAAA
ACGAACGGGACGGGCCATCTCAGTCCATTCCAACA---------------------------------------------
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>chr4B_584
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-----------------------TAATCTGCTCTAAATTGCAATCTGTTGCCTTCGCAAAAAGAAAAGCATTGAAATCTG
TTACGCCTTTTTATCGTACACAAATTGTCACGGATTTCTCGCCTG-GACT-AAGCGCCACTACCAGTACCGCCACGGCAC
CTAAACTCGCGCGTACATGGGCGATGGC----ACGAGGTGGACACGACACCGGGCGTTAGTCGTGCGTCCCTCCAAATTC
TCAACGAACTCCGATATCTCCTCCCGAGTTCCCACCTAATGGCCCCCTCACACCGTACACGTCTGTATAAAGCACCATTC
AAAAAAGGCGTAGTATCTGCCGAATCACTTCACTAATCTTGCGTCCCTCTTCCAGCTGCAGCTC----------TGTCCA
AGCGATCGATCGTCCGCT-----GTCTGTCCAACGAGCTCTTTCTAGCTCGATCGAGGCACGCCATTGCCATGGAAGCCG
CACGGATCGCGTCCTTTCTGCTCCTCCTCGGTACGTCTGCGAGTTCTTGGTTAGACGAAGTTCA---GGTTGTTGCTGCA
TTCGCACTGACCGT----GTATCTGCATGGTAACGTCTCCGTGCAGGGGTCGTTTGGTCACGCGCACAGCCCGGCGCCGA
GGCGGCCGGCACGACGGTCTTCACACTGCGCAACAACTGCACCTTCACGATCTGGCCGGCCACATTGTCCGGCAACAGCG
CCGTCGCCGTCGGGGGCGGCGGCTTCGAGCTCGCGCCGGGCGCCAACGTGTCGTTCCCCGGCCCGACGGGCTGGTCCGGC
CGGCTCTGGGCGCGCACCGGCTGCGTCGCCGCCGCCTCCGGCGCGTCCCTCGCCTGCGCCACGGGCGACTGCGGCGGCGC
CGTGCGCTGCACCCTGGGCGGGGCGCCCCCCGTCACGCTCGCCGAGTTCACCCTCGGGGGCGCGGACGGCAAGGACTTCT
ACGACGTGAGCCTGGTGGACGGGTACAACGTCGGCATCGGCGTGGCGGCCACGGGCGCCAGGGTGAACTCCTCGACATGC
GGCTACGCCGGGTGCGTGGGCGACGTGAACGCGCTGTGCCCCGCGGAGCTGCAGGTGGCCGGCAAGGAAGGGGACCAGGA
GGGGAAGACGGTGGCGTGCCGGAGCGCGTGCGAGGCGTTCGGGACGGCCGAGTACTGCTGCACGGGCGCGCACGGCGGGC
CGAACAGCTGCGGGCCGACCAAGTACTCGAGGCTGTTCAAGGCGGCATGCCCCGCCGCGTACAGCTACGCCTACGACGAT
CCCACCAGCACCTTCACCTGCGGCGCCGGAGCGCAGTACCTCATCACCTTTTGCCCGGCGCAGCAGTAGT-----CCGGC
CCTTCGATTTTGGCTAGTAGTGTCGTTCATTCATCGTTATGGTGTCTCGAT-------------------TTTGGTTAGT
ACTATCGTTCATCCGAATTAC----CAGATGTTTATTGGTTTGGTCGTGTCAATATGTATGCTTTTGATTCA--------
TTCATTTCAAA---AAAAAAAGAAATATGCTTTTATTCATTG-GGACTTTGCACAAAATAGATGAATTTATTTGTCACAT
GATTT---------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------------------------S-S---------------------S----S-
-----------SS--------------------------------S---------S------------------------
---------------------------------------------------S-------------------------S--
--------------------------------------------S------S---------------S-----SSS----
------------------------------------------------S---------------------S---S-----
------------------SSSSS-------------------S----------------S---------------S----
--------------S--------------------S--------------------------------------------
--------------SSSS--------------------------------------------------------------
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---S----------------------------------------------------------------------------
---------------------------------------------------------S----------------------
----------S----------S---------------------------------------S------------------
-------------------S----------------------------------------S-------------------
--------------------------------------------------------------------S--S-S------
-----S--------------------------------------------------------------------------
---------------------S------S---------------------------------------------------
----------------------------------------------------------------------SSSSS-----
-----------------S----------SS--------------------------------------------------
---------------------SSSS-----------------------------------S-----------SSSSSSSS
--------S---------S----S----------------------------------------S---------------
----------S------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S--------------
-------S-S------------------------------------------S-S----------S---S----------
------------------------------S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_556
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--------------------------------------------------------GAGCTGAAGGCCTGCAACTA----
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>reverse_2198
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-------------------------------------TTGAGCGGTTCCTCTTGGTC-----------------------
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