>input_sequence_66462
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------------------------------------------------------------ATCCTTTTCTTGACCTGTAG
CTCCACTGTTTCATCCAGTTGCACTGCACGTCTACACCACAGCACAGCGCGCACACCACACGG-----GCGGGGCGTAGA
TAGGGATGTCGTGGGAGGAGCCCGGCAGCCCGCAGCTGAGCCTCAGCGGCTTCAGCTCCCTCCCCTCCATCTCCAGCACT
GCCCATCCGCCTGCCCGCCTGCCCTCCCTCTCCCTCAGCATCGGCAACGGTAGTGCCGACGGAGAGGATCAGCAGCTGGG
CGTCAGCAGCGACGACGGCCACAAGAGCATTCGGGCGATGAAGAACAGGGAGTCGGCGCTGCGGTCCAGGGCCAGGAAGA
GGGCCTACACGCAGGAGCTCGAGAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAACTCAAGAGACAGTGCAAACTG
GTACGCCTTCTTCTC------TTCTTCTTCCTCCGGTTCCATCTCTATTTCTTGG--------TTGCTTGCTTGTGCATG
AGTAATTAGTTAAC---TCAATCCCCAGCTTCTTTCTCCATCTCTTCAGCTTCAGTCGGAGATTGCTGCACTCACCGCCC
AGCAGGCAAGCAACAAGCAGAGCAGCCCACACAGGAGAACCTCGTCCACTCAGTTCTAGCAACCGCTACATCA-------
---GGGCTGCATTTTCCT--CTAGCAAGCAATTCATTAGTATTAGCA---------GTGCACTTGTAGTTGGTTCTTGGC
CTCAATCAACTCAGCTGCCCGATCGATATGCCAGCGCGTGG--------------------TCCGTTTATCTCATGTGCA
TTTATCTGCATGTATTGCTGTGTGCACTAGTCAGACTGGATGCCTGGACCAGAG--CACATGCAACCTGCCTGCGATTAA
TTGTGTTGCAGAGCACCTTTATTAATAATGCTGAATCGTAATC-------------------------------------
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>chr2B_1_TraesCS2B01G489900
GTGAGAATGTTGTGCCTGAGCATGGAGAAGCGACAATGTTTGAACAGTTCATCCAATTTCATCCCGACATGCGTGTTTGG
GAAACTCACGTGCAACTGCAAAATGATTTGGTTGTGTATAGGTGGGCTCATGTTGGCAACCAAAAGATGTATCTTGTTTT
ATTCGTTTGCAAAACTATGTGAGAAATATGTCAGACATTTTTATTTTTATTCGGCTTGTAAAACTATGCTATTTTTTTTC
AGTTCAAACTATGCAAATTCATCAATGCAAAATAGGGCAGCCAACCGGCCACGCCGGCACATATGGGTCGGCGCGTTAGG
CGCGTTGCCGACCCATATCTGAAACAGAACGGAGCCGGCCGGCTGGCCGATCCAAACGGATAAAAAACAGACAAAATCAC
CATCCGTTTGTGTCACCCAATTGGGGTTGTTTTTATGTTTTGTGCAACAAACCTGAAAAATAGGTGTTTTGTGCTACGCT
AGCACCAAAAATAGGGGATTTTGCAATTTCCTCGGACTCACTGTAGTGAGCGAGTGCGACGAGACGAGTGGAGT------
----------GCCCGTACGTGCACTGAAGCCCGTGGCTGTGCGTGTGCCGCGAAAGGCGTTCTGATTCAGAGGTCCTGCA
CGCACGCAAGACGAGTACTCCTGCTTTCTGGCGGGACGTGACGGATGATGCCATCTCATCCAAATCCAATCGGATGAGCA
GTGAAGCTGGACCGTCGGCGTCTTCCGTCTGGGCCCG----TCTCTCTCTCTGCTTCACTCCTGTGTCTGCTTTGCAGCA
AAGCAGCGAGCAGAGAGTTCACGTGGTGTGTTTGATTCCGCTTCAGATTTGCAGACTTCAGCCGGGTGGTTTTGTGTCAC
TAACATGCGGGCCATTTGGTTCTCGGACCCACACGTCAGTGATGCTAAGTGCTCTGACTTAAAGTCCGCGAATCCCACCC
CGTTTGATTCGATGGCCCGCCCACCTAGTACCCGCCTATAGCTACACCTTCGTCCTCATCATCCTTTTCTTGACCTGTAG
CTCCACTGTTTCATCCAGTTGCACTGCACGTCTACACCACAGCACAGCGCGCACACCACACGG-----GCGGGGCGTAGA
TAGGGATGTCGTGGGAGGAGCCCGGCAGCCCGCAGCTGAGCCTCAGCGGCTTCAGCTCCCTCCCCTCCATCTCCAGCACT
GCCCATCCGCCTGCCCGCCTGCCCTCCCTCTCCCTCAGCATCGGCAACGGTAGTGCCGACGGAGAGGATCAGCAGCTGGG
CGTCAGCAGCGACGACGGCCACAAGAGCATTCGGGCGATGAAGAACAGGGAGTCGGCGCTGCGGTCCAGGGCCAGGAAGA
GGGCCTACACGCAGGAGCTCGAGAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAACTCAAGAGACAGTGCAAACTG
GTACGCCTTCTTCTC------TTCTTCTTCCTCCGGTTCCATCTCTATTTCTTGG--------TTGCTTGCTTGTGCATG
AGTAATTAGTTAAC---TCAATCCCCAGCTTCTTTCTCCATCTCTTCAGCTTCAGTCGGAGATTGCTGCACTCACCGCCC
AGCAGGCAAGCAACAAGCAGAGCAGCCCACACAGGAGAACCTCGTCCACTCAGTTCTAGCAACCGCTACATCA-------
---GGGCTGCATTTTCCT--CTAGCAAGCAATTCATTAGTATTAGCA---------GTGCACTTGTAGTTGGTTCTTGGC
CTCAATCAACTCAGCTGCCCGATCGATATGCCAGCGCGTGG--------------------TCCGTTTATCTCATGTGCA
TTTATCTGCATGTATTGCTGTGTGCACTAGTCAGACTGGATGCCTGGACCAGAG--CACATGCAACCTGCCTGCGATTAA
TTGTGTTGCAGAGCACCTTTATTAATAATGCTGAATCGTAATCCAATTGTGCTT-GTTAGCTTCAGAATTGGATCTGAGT
AGCCCCTTGTTGGGTAGTTGATAAGTTGAATTGTTCATCTCCCATTTAATCACCAGCCAAAATCATCATCGATTGTGACT
GCCA----------------------------------------------------------------------------
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--ATCCGGAAACTGATCCT------TAGCCCTCGTCATCGTTGTCATGGTGGT--------TGCTCGAATGCAAATGCTT
CTTCTTTCGTGTAGCCATCTTGTGTGTGGCGTGTGCACAGCCGAATGACACACTTAAGCCATACAA-GGGGGCCATGATT
TTACTGCGCTTGTGTGTGCAAG---GTCGACTGCGCTAGCACGAGGCATCGGGTGAGAGAAATTCTAGTGCTACACATCC
TGAAGGCATTGTCTTGGTTGCTCG--------------------------TGAAGTCTCCGGTGTTGAAATGGTTGATGT
TGGACGCGGTGCTCGGTTGGTGTTTCTCAGGTTGTA--------------------------------------------
----------TACATCCGCAGAGCAATGTACGACATGATCGACGCTTCCTCCACGGCTTCTTCCTCTGGCCCGATCATGT
CCTGGAA--CCCACTTGTTGACTCTCTAGGAGTTTAAGAGCAACTCCAACGGGCCGACCCAAACAGACACCGCTTTTGTG
TGCTTTTTGTCCGTTTGGGTTGACCAGGCGGACATCCGCGTCCGCATTATGAAATGGGTTGGCTTGGCCGCCCAACGGAG
GGGCAGACCCAAATGTGCGGGCATGTAAAAAAAAAGGCACACGAAATAAACTTAAAATAAACATAATTACATATAAGTGG
CCAGTCAAACGCCGGCCAAAGTCCACTTAAACATAATTAAACATTAATTAAAACATAAAAAGAGTCTGCACCCGCCTTCT
CCGCCCCGCGTGCTGCCCTAGACGCCGTGGCCTTGCCCTTGCCCTAGCCATCGACGCCGCCGTCGCCATCGCCGGTGAGA
TCGATGAAGACGGGAGCAGGGCCTGCCCACCCGAACGCCGCCTGGTATGCTGCCAGGGCAGCCACCTCCGGCGTCTACTG
GGATGGTGGCATTGCGGCTAGG
>chr2D_514
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---------------------------------GGACTCGCTGTAGTGAGCGAGAGCGACGAGACGAGGGGAGTGGCACA
CGATGCGATGGCCCGTACGTGCAC-------------TGTGCGTGTGCCGCGAAAGGCGTTCCGATTCAGAGGTCCTGCA
CGCACGCAAGACGAGTACTCCTACTTTCTAGCGGGACGTGATGGATGATGCCATCTCATCCAAATCCAATCCGATGAGCA
ATGAAGCTGGACCGTCGGCGTCTCCCGTCTGGGCCCG----TCC----CTCTGCTTCACTCCTGTGTCTGCTTTGCAGTA
AAGCAGCGAGC------TTCACGTGGTGTGTTTGATTCCGGTTCATATTTGCAGACTTAACCCGTGCGCCTTTGTGTCAC
TAACATGCGGGCCATTCGGTCCGGGGCCCCACACGTCAGTGACCCTAATTGACCTGACTTAAAATCCGCGAATCCCACCC
CGTGTGATTCGATGGCCCGCCCACCTAGTACCTCCCTATAGCTA------CGTCTTCATCATCCTCTTCTTGACCTGTAG
CTCCTCTGTTCCATCCAGTTCCACTGCACGTCTACACCACACCACAGCGCGCACACCACACGGGC------GGGCGTAGA
TAGGGATGTCGTGGGAGGAGCCCGGCAGCCCGCAGCTGAGCCTGAGCGGCTTCAGCTCCCTCGCCTCCATCTCCAGCACC
GCCGCTCCGCCTGCCCGCCTGCCCTCCCTCTCCCTCAGCATCGGCACCGG---------CGGCGAGGACCAGCAGCTGGG
CGTCAGCAGCGACGACGGCCACAAGAGCGTCCGGGCGATGAAGAACAGGGAGTCGGCGCTGCGGTCCAGGGCCCGGAAGA
GGGCCTACACGCAGGAGCTCGAGAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAGCTCAAGAGACAGTGCAAACAG
GCACGCCTCCTTCTC------TTCT---TCCTCCAGTGCCATCTCTCTTT--------CTTGCTTGCTTGCTTGTGCATG
GGTAATTAGTTAAT---TCAATCCCCCGCTTCTTTCTCCATCTCTTCAGCTTCAGTCGGAGATTGCTGCACTCACCGCCC
AGCAGGCAAGCAACAAGCAGAGCAGCCCGCACAGGAGAACTTCGTCCACTCAGTTCTAGCGGC-GCTACATCAGGATGCA
CGAGGGCTTCATCTTCCT--CTGGCTAGCAATTGATTAGTATTAGTGG----------GCACGAGTAGTTGGTTCTTGGC
TTCAATCAACTCACCTG-CCGATCGATATGCCAGCGCGTGG--------------------TCCGTTCATCTCATGTGCA
TTTATCTGCATGTATTGCTGTGTGCACTAGTCAGACTGGATGCCTGGACCAGAGCACACATGCAACCTGCCTGCGATTAA
TTGTGTTGCAGAGAACCTTTATTAATAATGCTGAATCGCAATCCAATTGTGCTTTGTTAGCTTCAAAATTGGATCTGAGT
AGTCCCTTGTTGGGTT--------GCTGAATTGTGCATCTCCCATTTAATCAACAACCAAGATCATCATCGATTGCGACT
GTCA----------------------------------------------------------------------------
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--ATCCGGAAACTGATTCGACGATGTAGCCTCCGTCGTCTTTGTCGTGGTGGA--------TGCTCGAATGCAAATGCTT
CTTCTTTCGTGTACCCATCTTGCGTTTGGCATGTGCACGGCCGAATGACAGACTTAAGCCATACAA-GGGGGGCATGAAT
GTACTGCGCTTGTGTGTGCACGGCCGTCGACTGCGCTAGCACTGGGCATCGGGTGAGAGAAATTCTAGTGCTACACATCC
TGAAGGCATTGTCTTGGTTGCTCGTGGTGTCCCTTTTTTTTTGAGACAAATGAAGTCCCCGGTGTTGAAATGGTTGATGT
TGGACGCGGGGCTCGGTTGGTGCTTTTCAGGTTGTATTTTTTCGAAAAGGGGGAGATCCCCGGCCTGTGCATTAGAGCGA
TGCATACGTATACATCCGCAGAGCAATGTATGACATGATCGACGCTTCCTTCATGGCTTCTTCCTCTGGCCCGATCATGT
CCTGGAAAACCCACTTGTTGACTCTC------------------------------------------------------
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>chr2A_554
TGG-----------------------------------------------------------------------------
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------------CCGTACGTGCACTGAAGCCCGTGGCTGTGCGTGTGCCGCGAAAGGCGTTCTGATTCAGAGGTCCTGCA
CGCACGCACGCAACACGACTACT-TTTCTGGCGGGACGTGATGGATGATGCCATCTCATCCAAATCCAATCCGAGGACCA
ATGAAGCTGGGCCGTCGGCGTCTTCCGTCTGGGCCCGCCCGTCC----CTCTGCCTCACTCCTGTGGCTGCTTTGCTGCA
AAGCAGCGAGC-------TCACGTGGTGTGTTTGATTCTGGCTCAGATTTGCATACTTAACCCGTGCGCCTTTGTGTCAC
TAACACGCGGGCCATACGGTTCGCGGCCCCACACGTCAGTGACCCTAAATGACCTGACTTAAAGTCCGCGAATGCCACCC
CGTGTGATTCGATGGCCCGCCCACCTAGTACCTCCCTATAGCTA------CGTCTTCATCATCCTCTTCTTGACCTGTAG
CTCCTCTGCTCCATCCCGTCTACT-----GTCTACACCACACCACAGTGCGCACACCACACGGGGGAAGCGGGGCGTAGA
TAGGGATGTCGTGGGAGGAGCCCGGCATCCCGCAGCTGAGCCTGAGCGGCTTCAGCTCCCTCGCCTCCATCTCCAGCACC
GCCGCTCCGCCCGCCCGCCTGCCCTCCCTCTCCCTCAGCATCGGCACCGG---------CGGGGAGGACCAGCAGCCGGG
CGTCAGCAGCGACGACGGCCACAAGAGCGTCCGGGCGATGAAGAACCGGGAGTCGGCGCTGCGGTCCAGGGCCAGGAAGA
GAGCCTACACGCAGGAGCTCGAGAAGGAGGTCCGCCGGCTCGTCGAGGACAACCTCAAGCTCAAGCGACAGTGCAAACAG
GCACGCCTTCTTCTCCCCTTCTTCTTCTTCCTCCAGCTCCATCTCTCTTTCTTGCTTGCTTGCTTGCTTGCTTGTGCATG
GGTAATTAGTTAACTCATCAATCCCCTGCTTCTTTCTCCATCTCCTCAGCTTCAGTCGGAGATTGCCGCGCTCACCGCCC
AGCAGGCAAGCAGCAAGCAGAGCAGCCCGCACCGGAGAACTTCGTCCACTCAGTTCTAGCAAC-GCTACATCAGGACGCA
CGAGGGCTTAATTTCCGTCGCTAGCTAGCAATTGATTAGTATCAATAAGATCTAAGGTGCACTGGTAGTTGGATTTTGGC
TTCAATTGACTCAACTGCCCGATCGATATGCCAGCGCGTGGGCTTTACTTGCGTTGGCTGATCCGTTCATCTCGTGTGCA
TTTCTCTGCATGTATTGCTGCGTGCACTGGTTGGCCTGGATGCCCGGACCGGAGCACAC--GCGACCTGCCTATGATTAA
TTGTGCTGCAGAATACCTTCATTAATAATTCTGAATCGCAATTAAATTGTGC-TTGTTAGCTTCAAAATTGGATCTGGGT
GGCCCCTGGCTGGGTT--------GTTGAATTGTGCATCTCCCATTTAATCACCAGCCAAAATCATCATCGATTGCGACT
GTCATCTGGAACGAAACTACTATACGGACGACAGTACCCTGGCCGATAGCTGGACGATGTTGGATCGAACGGTGTTGTTC
AGTTTTGCTTTTCACGTGAACGGCTTCCTGTGCTACATGTCTGCAAATCGTCCAATGTTTGTCGTCTGTGTAGCAGCGTT
CCATCCGGAAA------CT------AAGCCCCCGTCATCGTTGTCGTGGTGGTAAGGTGGTTGCTCGAAAGCAAATGCTT
CTTCTTTCGTGTACCCATCTTGTGTGAGGCATGTGCACGGCCGAATGACAGACTTGAGCCATACCATGGTGGGCATGAAT
GTACTGTGCTTGTGTGTGCATG---GTCGACTGCGCTAGTACTAGGCATCGGGTGAGAGAAATTCTAGTGCCACTGATCG
TGAGGGCGTTGTCTTGGTTGCTC--------------------------ATGAGCTCCCTGGTGTTGAAATGGTTGATGT
TGGACCCGGTGCTTGGTTGGGGCTTCTCAGGGCGTA--------------------------------------------
----------TGCATCC---------------------------------------------------------------
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>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S--------------S-------------S-----------
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----------------------S------------------S-----------------------------S--------
S------------------------------------------SSSSS--------------------------------
-----------SSSSSS-----------------------S-----------------S-S---S-S-SS----------
----------------S-----S---S---------------SS----S--SS---------------------------
---S----------------------------SS----------SSSSSS----S----------S--------------
----S-----S---------S--------------------S--------------------------------------
-------------------------------------------S------------------S----------------S
---SS-----------------------------------------S---SSSSSSSSS---S-----S-----------
----------------------------S-S-------------------------------------------------
----------------------------------------------------------S-------------------S-
-S--------------------------------S-----------S-------S-------------------------
S-------------------------S-----------------------------------------------------
----------------------------S-----------S----------------------S----------------
--------S----------------S-------S-----------S-----------------S----------------
S------------S-----------------------------------------------------S------------
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-------------S------------------------S--------------------------S--------------
---------------SSSSSSSSS----------S----------------------------------------S----
-S------------------------------------------------------------------------------
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----------------S--------------S-------------S----------------------------------
-------------S----------------S-------S-----------S---------------------S-----S-
S-------------------S---------------------S-------------------------------------
---------------------------------------------------------S----------------------
----------------------S---------------------------------------------------------
------------------------------S-------------------S--S--------------------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_342
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--CGTTGCCGACCCATATCTGA----------------------------------------------------------
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>reverse_2076
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---------------------------------------------------------------------------TGACT
GCCAATCCGGAAACT-----------------------------------------------------------------
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