>input_sequence_66461
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-------------------------------ATGGATTACCACCA------------GCAACACCAGCAGCAGCACCAGT
TCCTGATGCCCCCGCCCGCGTCGCTGCCGGCGCAGCAGCAGCAGCTGTGCGCGCCGATGATGGGCATTGAC---------
---------------------ATGGACATGGACATGGACGAGCAGCTGTGCTTCATGGGGAGGGGCGGCGTGGGGAGGGG
GGCGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCACTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGG
AGCCCCGGGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGC
GCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTTCGCCGCCCTCCGCGCCGACTACGACGCCCTCCACTCCCGCGTCGA
GTCCCTCAAGCAGGAGAAGCTCGCCCTCGCCGCACAGGTA---------------GCTAATCGCTGCGCACGTATTCTTA
ATCTCTTCTTCCCTGTACT-------TACTTGATCCAGCTGCTAACTGGAGTGTACGTACGTACGTGTGTGCAGTTGCAC
GAGCTGAGCGAGAGGCTGAGGCAGAGGGACGGCGGCAGCGGTGGCGCGGCGACCGCCACCGCCAGCAGCAGCAGCTGCAA
CGGAGGCGGGCAGGAGCTGGACGACGACAAGAGGAACGTCGTCGCCGGGTGCGTCGACGTCGAGCCCCCCGAGAGCTGCG
TGCTCGGCGGGACGACGTGCGCCACGCCGGCGGACGTCTCGGTGTCGGTGGAGTCGGAGTGCGACGACCACCTCCACTAC
GACGGGGCGGTCTTCCCGGAGTCCTTCTGCGCCACGCCCGAGCTGTGGGAGCCGTGGCCGTGGCCGCCCGTCGAGTGGAA
CGCGGTGGCTTGA-------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G407600
ACCCCCAAGTGCTCGCCTATCACGTTCACT----TCACCGTATCTATCTATCCTGAGTTACCATGATGTCT----CTTCC
TGGTAAACGATCGATGGAGTAAACTAGTGGAGCGCACCAGGACAACAGGCGACAAGACCGGCCAACGCGCGCGGCGCGAC
GCGCTAGCTA---------------TAGTGTGCTCTGTGCATCGGCCCGGTCGTTGCAGCCCGG-GAACGGGACAAACGC
GGCGCGCCACCTCGACGCCCCTTCCGGCGGAAGCCCCCGCACACCTGGCGCCGCGACGGCGACGCGTGCAGCCCCCGACG
GAGCTAGGCCCTCTGGGCGCGCACGGCCATTGGTCCTACCTGTTCCTCCTCG---GCCCGTCCCCGTCTCCCCGTGGAAC
ACCAAGGCGCACACCTTTCCACCACCCATTGGCCGGCAAGCCC----CATGATACACTACTGAGGACTGGG---GTACTG
CTGATCCTTTCTCGTGCAGCTGATCGATCGATTCGTAGAATCGTAGTACATGAAAATGCGAGAAGTGGACAG--------
--------------ACAGAGAAGAAAATAAACGAAAAGAACACGTCCGGTCGACTTA--ATTTGCAATTCGTAGGCCGGA
AGGAAGACTTGAATGAGCAGGAGGAGGAGG---AGAAGCAAGATCTTTGCACTCGTGGCCACGTTTCGGGTGCCGATCTC
GAGGCTGGAGGATAGACATGGGGGCGCCGTGGTGGGCACAGCTTCTGGCGCCGCTGGATGCGCGACACTTGGCCTGGCGG
ACGAAAGCGGCTTT-GCGCGGTGTCAGGCTGCGTGGGTCCCGCCC-GGGAGGTTTCTTTATCCGCCATCGCGAAGACCAC
ATGTTCGCATCTCGCGCAACGCGGACACGTAACGCCGTCCGCCGGTATAAAACCGGCCTCCCGGCGCCGAGAGACAGAGG
AAG-----AGGAACGGACGGCATAGCGTAGGGAGGGGATCCATCCAGATCCAACAGAGCAGAGGAGCGACCGGTCGGAGC
AGAGCAGT---GGCCCACTGGGTCCGTCGACATGGATTACCACCA------------GCAACACCAGCAGCAGCACCAGT
TCCTGATGCCCCCGCCCGCGTCGCTGCCGGCGCAGCAGCAGCAGCTGTGCGCGCCGATGATGGGCATTGAC---------
---------------------ATGGACATGGACATGGACGAGCAGCTGTGCTTCATGGGGAGGGGCGGCGTGGGGAGGGG
GGCGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCACTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGG
AGCCCCGGGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGC
GCGCGGTGGCGCTCCAAGCAGCTCGAGCACGACTTCGCCGCCCTCCGCGCCGACTACGACGCCCTCCACTCCCGCGTCGA
GTCCCTCAAGCAGGAGAAGCTCGCCCTCGCCGCACAGGTA---------------GCTAATCGCTGCGCACGTATTCTTA
ATCTCTTCTTCCCTGTACT-------TACTTGATCCAGCTGCTAACTGGAGTGTACGTACGTACGTGTGTGCAGTTGCAC
GAGCTGAGCGAGAGGCTGAGGCAGAGGGACGGCGGCAGCGGTGGCGCGGCGACCGCCACCGCCAGCAGCAGCAGCTGCAA
CGGAGGCGGGCAGGAGCTGGACGACGACAAGAGGAACGTCGTCGCCGGGTGCGTCGACGTCGAGCCCCCCGAGAGCTGCG
TGCTCGGCGGGACGACGTGCGCCACGCCGGCGGACGTCTCGGTGTCGGTGGAGTCGGAGTGCGACGACCACCTCCACTAC
GACGGGGCGGTCTTCCCGGAGTCCTTCTGCGCCACGCCCGAGCTGTGGGAGCCGTGGCCGTGGCCGCCCGTCGAGTGGAA
CGCGGTGGCTTGAAGCCGTGTAGTGTATACTCCCTCCGTCTCAAAATGTCTTAAGTTTAGTATAAATTTATACTAAAATT
AGTACAAACTTGAGACACTTATTTTGAAACGGAAGGAGTACATAATAACCACGTAGGCGGCTTGTGTGTGTAGCTTCACG
TACGT----GCATGTTGTGCTCGATTTCTCATCTGGTTGGGGTCTTGGGGATACATGTGAGAAGAGGCGAATGGGGACGC
GGCAATGTCGGGTGGGTCCGTGT------AAGATAGAGGGTGATGCACCTGGATC--AAGAGAAGTGACCGAAGTGAT-A
AACCATGGAGGCGACCACCCAGCCAATGGGATCAGTGATTCGGATGCTGCTAAAAATGTTGTTAGTTACTCCCTCCGTTA
TCAAATACTCCCTCCGTCCGGAAATACTTGTCATCAAAATGAATAAAAGGGGATGTATCTAGATGTATTTTAGTTCTAGA
TACATCCTTTTTATCCATTTTGATGACAAGTATTTTCGGACGGAGGGAGTAGTATTTGTCTTTCTAGATATTACAACAAA
TGACTACATACAAAGCAAAATAAACGAATGTACATTCTAAAATATGTTTAAATACATCTGTATGTTGTAACCATTTGAAA
TGTATAGAGAGACAAATATTTGGGAACGGAGGGAGTAGTAGAGATCGTTGGTAGAGTTTGCATCAGCTGTTCTGTTTGTT
GTTGCTCCCACTGTGAATTCAAATGTTGGAGGCAGGATCGATCGTTCAATTGATAGTAATATAAAATACTGCTTCTCAAC
TTTAGGATCTTGTGTAGAGCATCATCAGTAGGTTCTTGTCTAGGATTCTCCAAACGATCATCATGGTTAGCCGTTTTGCT
AGGTGATCTACGGATCTGGATGTAATTTTTATTTCTGGTATTCGTTGTACTGCCATGATTGAAGATGAATAGATTGAAAG
TTTTTCCGCAAAAAAAAACTTTTCGCATGTTCAAAAAAAAAAATAACTTTCCGCAGCCTGCTTCTT
>chr2D_1
ACCCCCAAGTGCTCGCCTATCACCTTCACTTCACTCACCGTATCTATCTATCCTGAGTTACCATGATGTCCCTTCCTTCC
TGGTAAACGATCAATGGAGTAAACTAGTGGAGCGCACAACGACAACAGGCGACAAGACCGGCCAACGCG---------AC
GAGCTAGCTTGCACTCGTAGCTAGCTATTGTGGTGTGTGCATCGGCCCGGTCGTTGGAGCCCGGCGAACGGGACAAACGC
GGCGCGCCACCTCGACGCCCCTTCCGGCGGAAGCCCCCGCACACCTGGCGCCGCGACGGCGACGCGTGCAGCCCCCGACG
GAGC-------------CGCGCACGGCCATTGGTCCTACCTGTTCCTCCCCCCGCGCCCGTCCCCGTCTCCCCGTGGAAC
ACCAAGGCGCACACCTTTCCACCACCCATTGGCGGGCAAGCCCGCCCCATGATACACTACCGGAGTAGTACTACGTAGTG
CTGATCCTTTCTCGTGCAGCCGATCGATCGGTTCGT---------GTACATGAAAACGCGAGAAGTGGACAG--------
--------------ACAGAGAAGAAAATAAACGAAAAGAACACGTCTGGTCGACTTATAATTTGCAATCCGTAGGCCGGA
AGGAAGCCTTGAATGAGCGGGAGGAGGAGG---AGAAGCAAGATCTTTGCACCCGTGGCCACGTTTCGGGTGCGGATCTC
GAGGCGGGAGGATAGACATGGGGGCGCCGTGGTGGGCACAGCCTCTGGCGCCGCTGGATCCGCGACACTTGGCCCGGGGC
ACGAAAGCGGCTTTCGCTCGGTGTCAGGCCGCGTGGGCCCCGGGCGGGGAGGTTTCTTTATCCGCCGTCGCGAAGACCAC
ATGTTCGCATCTCGCGCAACGCGGACACGTAACGCCGTCCGCCGGTATAAAACGGGCCTCCCGGCGCCGAGAGGCAGAGG
AAG-AGGAAGGAACGGACGGCATAGCGTAGGGAGGGGATCCATCCAACAGAG-CAGAGCAGAGTAGCGACCGGTCGGAGC
AGAGCAGT---GGCCCACCGGGTCGGTTGACATGGATTACCACCA------------GCAGCAG------------CAGT
TCCTGATGCCCCCGCCCGCGTCGCTGCCGGCGCAGCAGCAGCAGCTGTGCGCGCCGATGATGGGCATGGAC---------
---------------------ATGGAGATGGAGATGGAGGAGCAGCTGTGCTTCGTGGGGAGGGGCGGCGGGGGTCGTGG
GGCGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGATACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGG
AGCCCCGGGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGC
GCGCGGTGGCGCTCCAAGCAGCTGGAGCACGACTTCGCCGCCCTCCGCGCCGACTACGACGCCCTCCACTCCCGCGTCGA
GTCGCTCAAGCAAGAGAAGCTCGCCCTCGCCGCACAGGTAAATATATCCGGCAAAGCTAATCGCTTCGCGCGTATTCTTA
ATTTGATCTTCCCGA-----------TACTTAATCCAGCTGCTAACTG-----TACGTACGTACGTGTGTGCAGTTGCAC
GAGCTGAGCGAGAGGCTGAGGGAGAGGGACGGCGGCGGCGGTGG---------CGCCACCGCCAGCAGCAGCAGCTGCAA
CGGAGGCGGCCAGGAGCTGGACGACGACAAGAGGAACGTCGTCGCCGGGTGCGTCGACGTCGAGCCCCCAGAGAGCTGCG
TGCTCGGCGGGACGGCGTGCGCCACGCCGGCGGACGTCTCGGCGTCGGTGGAGTCCGAGTGCGACGACCACCTCCGCTAC
GACGGGGCGGTCTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCGTGGCCGTGGCCGCCCGTCGAGTGGAA
CGCGGTGGCTTGAAGCCGCGGAGTAGTATATACATGTTGTGAAC------------------------------------
------------------------------------------------CCACGTAGGCGGCTTGTGTGTGTAGCTTCACG
TACGT----GCATGTTGTGCTCGATTTCTCATCTGGCTGGGGATACATGT--G---------AGAGGCGAACGGGGACGC
GGCAATGTCGGGTGGGTCCGTGTGAATGTAAGATAGAGGATGATGCACCTGAATCGAAAGAGAAGTGACCGAAGTGATGA
AACCATGGAGGCGACCACCCAGCCAATGGGATCAGTGATTCGGATGCTGCTAAAATGTTGCCACTTT-------------
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-----------------------------------TAGTAGAGATCATTGGTAGAGTTTGCATCAGCTCTTCTGTTTGTC
GTTGCTCCCGCTGTGAATTCAAGTGTTGGAGGCAGGATCGATCCATCAATTGATAGTAATATAAAATACTGCTTCTCAAT
TTTAGGATCTTGCGTAGAGCATCGGCAGTAGGTTCTTGTCTAGGAGTCTCCAAACGTTCATCATGGTTAGCCGTTTTGCT
A-------------------------------------------------------------------------------
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>chr2A_196
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----------------------------------------------------------GCCCGGCGAACGGGACAAACGC
GGCGCGCCACCTCGACGCCCCTTCCGGCGGAAGCCCCCGCACACCTGGCGCCGCGACGGCGACGCGTGCAGCCCCCCGAC
GGA-------------GCGCGCACGGCCATTGGTCCTACCTGTTCCTCCTCCCGCGCCCGTCCCCGTCTCCCCGTGGAAC
ACCAAGGCGCACACCTTTCCACCACCCATTGGCCGGCAAGCCCGCCCCATGATACACCACCGGAGTAGTACTACGTAGTG
CTGATCCTTTCCCGTGCAGCCGATCGATCGATTCGT--------AGTAGATGAAAATGCAAGAGGTTCCGTGGCGTGGAC
AGACAGACATAGGCAGAGAGAAATAAACGAATGAAAATTACTCGTCCGGTAGAGGC-----TTGCAATTCGTAGGCCGGA
AGGAAGCCTTGAGTGAGCGGAAGGAGGAGGAGTAGAAGCAAGATCTTTGCACCCGTGGCCACGTTTCGGGTGCCGATCTC
GAGGCGGGAGGATAGACATGGGGGCGCCGTGGTGGGCGCAGCCTCTGGCGCCGCTGGATCCGCGACACTTGGCCCGGGGC
GCGAAAGCGGCTTTCGCGCGGTGTCAGGCCGCGTGGGCCCGGA-CGGGGAGGTTTCTTTATCCGCCGTCGCGAAGACCAC
ATGTTCGCGTCTCGCGCAGCGCGGACACGTAACGCCGCCCGCCGGTATAAAACGGGCCTCCCGGCGCCGAGAGACAGAGG
AAGGAGGAAGGGACGGACGGCATAGCGTAGGGAGGGGATCCATCCAGCAGAG-CAGAGGAGAGCAGCGACCGGTCGGAGC
AGAGCAGTGGCGGCCCACTGGGTCGGTCGGCATGGATTACCACCACCATCACCAGCAGCAGCAG------------CAGT
TCCTGATGCCTCCGCCGGCGTCGCTGCCGGC---GCAGCAGCAGCTGTGCGCGCCGATGATGGGCATGGGCATGGAGATG
GGCATGGAGATGGAGATGGAGATGGAGATGGAGATGGAGGAGCAGCTGTGCTTCGTGGGGAGGGGCGGCGGGGGTCGGGG
GGCGGAGAGGAAGCGGCGGTTCACGGAGGAGCAGACACGGTCGCTGGAGTCCATGTTCCACGCGCACCACGCCAAGCTGG
AGCCCCGGGAGAAGGCGGAGCTGGCGCGCGAGCTGGGCCTGCAGCCGCGCCAGGTGGCCATCTGGTTCCAGAACAAGCGC
GCGCGGTGGCGCTCCAAGCAGCTGGAGCACGACTTCGCCGCCCTCCGCGCCGACTACGACGCCCTCCACTCCCGCGTCGA
GTCCCTCAAGCACGAGAAGCTCGCCCTCGCCGCACAGGTA----------GCTAATCTAATCGCTGCGCACGTATTCTTA
ATCTCTTCTTGGCTTCTTGCCGATAGTACTTAATCCAGCTGCTAACTGGAG--TACGTACGTACGTGTGTGCAGTTGCAG
GAGCTGAGCGAGAGGCTGAGGGAGAGGGACGGCGGCGGCGGTGGCGCGGCGACCGCCACCGCCAGCAGCAGCAGCTGCAA
CGGAGGCGGCCGGGAGCTGGACGACGACAAGAGGAACGTCGTCG------------ACGTCGAGCCCCCCGAGAGCTGCG
TGCTCGGCGGGACGGCGTGCGGCACGCCGGCGGACGTCTCGGCGTCGGTGGAGTCCGAGTGCGACGACCACCTCCACTAC
GACGGGGCGGTCTTCCCGGAGTCCTTCTGCGCCACGCCGGAGCTGTGGGAGCCGTGGCCGTGGCCGCCCGTCGAGTGGAA
CGCGGTGGCTTGAGGCCCTGGAGTAGTATATACATGTTGTGAAC------------------------------------
------------------------------------------------CCACGTAGGCGGCTTGTGTGTGTAGCTTCACG
TACGTACGTGCATGTTGTGCTCGATTTCCCATCTGGTTGGGGATACATGCGAG---------AGAGGCGAACGGGGGCGC
GGCAATGACGGGTGGGTCCGTGT------AAGACAGAGGGTGATGCACCTGAATA--CAGAGAAGTGACC-------TGA
AACCATGGAGGCGACCGCCCAGCCAATGGGATCAGGGATTCGGATGCTGCTAAAATGTTGCGAGT---------------
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--------------------------------------TAGAGATCATTGGTGGAGTTTGCATCAGCTGTTCTGTTTGTT
GTTGCACCCGCTGTGAATTCAAATGTTGGAGGTAGGACCGATCCATCAATTGATAATACTACAAAATACTGCTTCTCAAC
TTTAGAATCTCGTGTGGAGCATCGGCAGTAGGTTCTTGTCTAGGATTGTCCAAACGTTCATCATGGTTAGCCGTTTCGCT
A-------------------------------------------------------------------------------
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>SNPs
-----------------------S----------------------------------------------S---------
------------S------------------------S-S-----------------------------SSSSSSSSS--
-S-------S-----------------S----S-S---------------------S-----------------------
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----SSSSSSSSSSSS-----------------------------------S----------------------------
------------------------------------------------------------S-SS-SSSSSS------S--
--------------------S---------------SSSSSSSS------------------------------------
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------S-----------S---------------------------------S---------------------------
-----S------------------------------------S----------------S--------------S--S-S
-----------------------------S-------S----SS----------------------S-------------
-----------------------------------------------------S--------------------------
-----------------------------------------------SSSSSS----------S----------------
------------------------S-----------------------------------S--SSSSSSSSSSSSS----
-------------------------------------------------------------------S------------
--------------------------S-----S-----S---------------S---------------S---SS----
------------------------------------------S-------------------------------------
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-----------------------S--------------------------------------------------------
------------S-------------------------------------------------------------------
--------------SSSSS------------S-------------------SS---------------------------
---------------------S--------------S-------------------------------------------
---------S----------------------------------------------------------------------
--------------S---------------------------S------------S------------------------
--------------------------------------S-----------------------------------------
--------------------S---SSSSSS-S-S-SSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------
------------------------------------------SSSSSS-SSSSSSSSSSSSS---------S--------
---------------------------------------------------S----------------------------
-------------------------------------------------------SSS-SSSSSS--SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S---------------------------------
---------S---------------------------------SS-----------------------------------
-----------------------SS-------------------------------S-----------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_120
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--------------------AAACTAGTGGAGCGCACCAG----------------------------------------
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>reverse_2219
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----------------------------------------------------------GAGAAGAGGCGAATGGGGAC--
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