>input_sequence_66436
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-----------------------------------------ATGGGCGCCGCCGTGATGGAGCAGCGACGCGGCGGCAAG
CCCAAGGTGGTGTTCGTGCTGGGCGCGACATCCACAGGCAAGTCCAAGCTTGCCATCGCCCTGGCGGCGCTCTTCGGCGG
CGAGGTGATCAACTCTGACAAGATCCAGGTGTACGCTGGCCTCCCAGTGATCACCAACAAGGTGACGGACGAGGAGTGCG
CGGGTGTGCCGCACCACCTCCTCGGCTGCGTGCCGTGCCCCGACGCTGATTTCACTGTCGACGACTTCTGCCGGGAGGCG
ACTGACGCGATCAAGCGCGTTCTCTCCCGCGGCGGCCTCCCCGTGGTGGCCGGCGGCTCCAACCGGTACGTCGAGGCGCT
CGTCGACGGAGACGGCGGCGCCTTCCGCTCCTCCCATGACTGCCTCTTCGTCTGGCTGGACGCCGCGCCGGAAGTCCTCC
GCCGCTCCACGGCCGTACGGGTGGACGACATGGTGCGGCGGGGGCTCGTGGAGGAGGCCCGCGCGGCGTTCGACCCGGAC
GCCAGCTACACCCGGGGCGTGCGCCGCGCCATCGGCCTGCCGGAGATGGACGCGTACCTGCGACGCGCGAGCGACGGCGA
TGATGACGGCACAGCCGCGATGCTGGGGAGAGCGGTGGAGGAGATCAAGGTTAACACGTTCGGGCTGGTGCTGGAGCAGG
TGGAGAAGATCCGGCGGTTGAGCACGCTGGAGGGGTGGGACGTCCGGCGGGTGGACTGCACAGAGGTGCTGGCGCGGACG
GCGGACGGCGAAGGGGTGCAGGAGCTATGGAGGAAGGTTGTCTGGGAGCCCGTCGAGGACATGGTGCGGACGTTCGTCAT
CGCGGAGAAGAGCGGTGGGAAGATCAACCTGCTGCCCTAG----------------------------------------
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>chr5A_1_TraesCS5A01G181100
TTCTGATGTTCACCGCCAGAAATTTCAGTTTTTTTCCTTTTCTTACATTTTTGGATTTTACTGTTTATATGGGTGCATTT
GAGTTTGGAAATAGAAAATTCATGTCTGAAAAGACAAACACAAAACATTATAATATTTTAGGAGCAAAAGAAAAATCACG
TTTGGAAGTAAAAATTTCATATTTCTTAATTAATATATTCTCGTTTCACCCGCAAAAAGTAGAAATTTCATGTTAATTTA
TATCTTTTACAAGAATAACATGTGTATCGTTCCCCGCAAAAAAAGTAACATGTGTATCGTAAAAAAAATGTTTACCTAGT
ACTCCATCCATTCGAAAATACTTGTCATCAAAATGAACAAAAAGAATATATCTAGAACTAAAATACATCTAGATATATCC
ATTTTTATTCATTGCGATGATAAGTATTTTTGGACGGAGGAAATACAGTCTATCATTTTTCACTACCCGCTCCATGGTCT
TGGACAATAAAATAAGTCCAGCTACAGTCGCTAAGTCGTATCCTTCGTTGTGGTGCAATCTAGACAGTAAAAAATACCTA
TATGATTAAAATGGTATAGCCTTCACCCGCAAAAAGAAGAAGATGGTATAGCCTTATTAGATAGCAGCATGCACATTATG
AACATGGATTATAGAATGTAAGTGGAGGGCTTGGAGCGTGGGTTCGGCTAGACCATGGTCTAGCAACATATTTGCGCGGA
CGCGAGCGCTATAATCCACCTGTTGATGTTAATCATTTTCCATGATAATACTCCATTACAATT-GGGTATTCTTAATGAA
GTAAATATGAAATGAATTAAATATCATAATCTCTGCGCATTGATTGGTAGTATTATATATATCAATGCGTAGAGATTATA
ATATTTAATTAATTCCTATTTCGTGCATGCGTGCTCCTATAAAAGCCGGCGTCCCGGTCGCGTCGCTTTCAACAATCCAG
CTGTCAATCACGCTCTCCACCTACGTACGAACAGTCAATCCATGGGCGCCGCCGTGATGGAGCAGCGACGCGGCGGCAAG
CCCAAGGTGGTGTTCGTGCTGGGCGCGACATCCACAGGCAAGTCCAAGCTTGCCATCGCCCTGGCGGCGCTCTTCGGCGG
CGAGGTGATCAACTCTGACAAGATCCAGGTGTACGCTGGCCTCCCAGTGATCACCAACAAGGTGACGGACGAGGAGTGCG
CGGGTGTGCCGCACCACCTCCTCGGCTGCGTGCCGTGCCCCGACGCTGATTTCACTGTCGACGACTTCTGCCGGGAGGCG
ACTGACGCGATCAAGCGCGTTCTCTCCCGCGGCGGCCTCCCCGTGGTGGCCGGCGGCTCCAACCGGTACGTCGAGGCGCT
CGTCGACGGAGACGGCGGCGCCTTCCGCTCCTCCCATGACTGCCTCTTCGTCTGGCTGGACGCCGCGCCGGAAGTCCTCC
GCCGCTCCACGGCCGTACGGGTGGACGACATGGTGCGGCGGGGGCTCGTGGAGGAGGCCCGCGCGGCGTTCGACCCGGAC
GCCAGCTACACCCGGGGCGTGCGCCGCGCCATCGGCCTGCCGGAGATGGACGCGTACCTGCGACGCGCGAGCGACGGCGA
TGATGACGGCACAGCCGCGATGCTGGGGAGAGCGGTGGAGGAGATCAAGGTTAACACGTTCGGGCTGGTGCTGGAGCAGG
TGGAGAAGATCCGGCGGTTGAGCACGCTGGAGGGGTGGGACGTCCGGCGGGTGGACTGCACAGAGGTGCTGGCGCGGACG
GCGGACGGCGAAGGGGTGCAGGAGCTATGGAGGAAGGTTGTCTGGGAGCCCGTCGAGGACATGGTGCGGACGTTCGTCAT
CGCGGAGAAGAGCGGTGGGAAGATCAACCTGCTGCCCTAGAGGATAGAGCAACTCCTGTGTCAGTTTTGGCGCGCTGTGT
TAGCTTTGAATTGTCCACCGGGTTTTCTTAGTAAAACTTGTCGAAGAAACGTGAGGAGCTTCACCGTGAAGGAGAGACCT
AGCATATATATACATATAAAAGATAATAGTACTGCAGAT---------TTGCAGAATGGCCTATTTCGAACTTTCACTAC
ATGAAAATAACTTGCCGCCGTGTGTGGGGCTGTAAGCCAGGTGCAATTTTTCAGTCACTCAGGCTTACATTCCTCTAAGC
CGAGTAACACCGTCGA----------------------------------------------------------------
-------------------------------------------ATTGTCTTATGCGGTTTTTTTTTATCCCTCATCCAAT
ACTTTATAGTTATATGTACTCCTTCTATTTCTAAATATAAGTCTTTGAAAAGATTTCACTATGGACCACATACAAAGCAA
AATGAGTCAATCTATACTCTAAAATGCATCTAGATACATCCGTATGTTGTCTATAGTAAAATCTCTACAAAGACTTACAT
TTAGGAACGGAGGAAGTATTATGTGAGGACCCTGTGACATTTTGCCTCGAAGTCTGTCTGATAGCTCCCTCAATTTTATC
TTGATATTCTTCGTTCGATCATATACTCTATAATA----------------AAGATTTTGAATATGCATATGAACAGCCA
ACCACCAGGGTGAGAATATGTCCGTGTCATCTATATCTACTAATAAAAGAAATAAGTATTCTCAGTCCGTCATGTTATTT
TAAGAAAAAACCCTAGTGTTTCTAACATTAAACCCGCAGTACATATCAAATGTTTTTTAAAACACTCATATCTTCTAAAC
CGTAACTCTAAATTTAACATGTTATATATGAAATTTGATTAGAAAAATACATAGAATCTGAATATGATGTTATTTTACCT
GTTAACCATTTAAAAAGTACTATCTATGGTGCAATCTCAATCAATAGTGCATCATCCATCTTTCTTTCATATCATTATTG
ATTCGAATTATGGATGAACACTCAACAAAATCAGGATTGGAGATAAAATTGA
>chr5D_716
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---------------------------------------------------------------------------GCGGA
CGCGAGCGCTATAATCCGCCTGTTGATGTTAATCATGTCCCATGATAAT-----ATTATAATTGGTGTATTCTCAATGAA
GTAAATATGGAAAGTAAATGCGGTATCCCTAGCATTGATGTGG----TATAAACCAAAATTATGGGAGAAATCCTCG---
-TATTTATACCATTCCATATTCGTGCATGGGTGTTCCTATACAAGCCAGCGTCCCGGTCGCGTCGCTTTCAACAATCCGG
----CAATCACGCCCTCCACCTACGTACCAA----CAATTCATGGGCGCCGCCGTGATGGAGCAGCGACGCGGCGGCAAG
CCCAAGGTGGTGTTCGTGCTGGGCGCGACTTCCACGGGCAAGTCCAAGCTGGCCATCGCCCTGGCGGCGCGCTTCGGCGG
CGAGGTGATCAACTCGGATAAGATCCAGGTGTACGCTGGCCTCCCCGTGATCACCAACAAGGTGACGGACGAGGAGTGCG
CGGGCGTGCCGCACCACCTCCTCGGCTGCGTGCCGTGCCCCGACGCTGACTTCACCGTCGACGACTTCTGCAGGGAGGCG
GCTGACGCGATCAAGCGCGTTCTCTCCAACGGCGGCCTCCCCGTGGTGGCCGGCGGCTCCAACCGGTACGTCAATGCGCT
CGTCGAAGGAGACGGCGGCGCCTTCCGCTCCTCCCATGACTGCCTCTTCGTCTGGCTTGACGCCGCGCCGGAAGTCCTCC
GCCGGTCCACGGCCGTACGGGTGGACGATATGGTGCGGCGCGGGCTGGTGGAAGAGGCACGCGCGGCGTTCGACCCGGAC
GCCAGCTACACCCGGGGCGTGCGCCGCGCCATCGGCCTGCCGGAGATGGACGCGTACCTGCGACGCGCGAGCGACGGCGA
TGACGACGGCGCACCGGCGATGCTGGGGAGAGCGGTGGAGGATATCAAGGTTAACACGTTCGGGCTGGTGCTGGAGCAGG
TGGAGAAGATCCGGCGGCTAAGCACGCTGGAGGGGTGGGACGTCCGGCGGGTGGACTGCACAGAGGTGCTGGCGCGGATG
GCTGACGGCGAAGGGGTGCAGGAGCTATGGCGGAAGGTTGTCTGGGAGCCCGTCGAGGACATGGTGCGGACCTTCGTCAT
CGCGGAGAAGAGCAGTGGGAAGATCAACCTGCTGCCCTAGAGGATAGAGCAACTCCTGTGTTAGTTTTGGCGCGCTCTGT
TAGTTTTGAATTGTCCACCGGGTTTTCTTAGT-AAACTTGTCGAAGAAACGTGAGGAGCTTCATCGTGAAGGAGAGACCT
AGCATATATACACATATACTCCTTTATTGCGTTTCCAAAAAAATAATATTGCGGAATGACCTATTTCGAACTTTCACTAC
ATGAAAATAGCTTGCCGCCGTGTGTGGGGCTGTAAGCCAGGTGCAATTTTTCAGTCACTCAGGCTTACATTCCTCTAAGC
CGAGTAACACCGTCGAATTGTCTTATGCGGTCATTTTTTATCCCTCGTCCAATACTTTATAGTTACATATATATTAAGTG
AGAGTATTATGATAAATACTTCGGAATAGTACATGAGATGAACATC----------------------------------
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--------------------------GGACCCTGTGACGTTTTGCCCCGAAGT---------------------------
--------------------ATATATTTTATAATAAAGTTGATTAACCTTGAAGATTTTGAATATGCATATGAACAGCCA
ACCACCAGGGTGAGAATATGTCC---------------------------------------------------------
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>chr5B_718
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-----------------------------------------------------------------------------GGA
CGCGAGCGCTATAATCCACCTGTTGATGTTAATCATTTCGCATGATAAT-----ATTATAATT-GTGCATTCTCAATGAA
GTAAATATGAAAAGTAAATACCTGCAGGATCTCTACTGATTTGATATTATAAAACAAAATTATGGTAGAAATCAG-G---
-TATTTATTTCATGCCTATTTCATGCATGCGTGTTCCTATAAAAGCCAGCGTCCCGGTCGCGCCGTTTTCAACAATCCGG
----CAATCACGCCCTCCACCTACGTACCAA----CAATCCATGGGCGCCGCCGTGATGGAGCAGCGACGCGGCGGCAAG
CCCAAGGTGGTGTTCGTGCTGGGCGCGACTTCCACGGGCAAGTCCAAGCTGTCCATCGCCCTGGCGGCGCACTTCGGCGG
CGAGGTGATCAACTCGGATAAGATCCAGGTGTACGCTGGCCTCCCCGTGATCACCAACAAGGTGACGGACGAGGAGTGCG
CGGGCGTGCCGCACCACCTCCTCGGCTGCGTGCCGTGCCCCGACGTTGACTTCACCGTCGACGACTTCTGCAGGGAGGCG
GCTGACGCGATCAAGCGCGTTCTCTCCAACGGCGGCCTCCCCGTGGTGGCCGGCGGCTCCAACCGGTACGTCGAGGCGCT
CGTCGAAGGAGACGGCGGCGCCTTCCGCTCCTCCCATGACTGCCTCTTCGTCTGGCTTGATGCCGCGCCGGAAGTCCTCC
GCCGGTCCACGGCCGTACGGGTGGACGATATGGTGCGGCGCGGGCTTGTGGAAGAGGCACGCGCGGCGTTCGACCCGGAG
GCCAGCTACACCCGGGGCGTGCGCCGTGCCATCGGCCTGCCGGAGATGGACGCGTACCTGCGACGCGCGAGCGACGGCGA
TGACGACGGCGCGGCGGCGATGCTGGGGAGAGCGGTGGAGGAGATCAAGGTTAACACGTTCGGGCTGGTGCTGGAGCAGG
TGGAGAAGATCCGGCGGCTGAGCACGCTGGAGGGGTGGGACATCCGGCGGGTGGACTGCACAGAGGTGCTGGCGCGGACG
GCGGACGGCGAAGGGGTGCAGGAGCTATGGAGGAAGGTTGTCTGGGAGCCCGTCGAGGACATGGTGCGGACCTTCGTCAT
CGCGGAGAAGAGCGGTGGGAAGATCAACCTGCTGCCCTAGATGCTAGAACTACTCATGTGTTTGTTTTGGCGCCCTGTGT
CAGTTTTGAATA----------------------------TCGAAGAAAT-TGAGGAGCTTCATCGTAAAGGAT------
-----------ACATATACTCCTTTATTGCGTTTCCAAAGAAATAATATTGCAGAATGACCTATTTCGAACTTTCACTAC
ATGAAAATAACTTGCCGCCGTGTGTGGGGCTGTAAGCCAGGTGCAATTTTTCAGTCACTCAGGCTTACATTCCTCTAAGC
CGAGTAACACCGTCGA----------------------------------------------------------------
-------------------------------------------ATT----------------------------------
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--------------------------GGACCCTGTGACATTTTGCCCCGAAGTCTGTCTGATAGCTCCTTCAATTATATC
TTGACATTGTTGGTTCACCAGAAGAAGATGAT----------TTAACCTTGAAGATTTTGAATATGCATATGAACAGCCA
ACCACCGGGATGAGAATATGTCC---------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
--------------------------------------S----------SSSSS----S------S-------S------
------------S-S-SSS-SSS---SS------S--S----SS-SS--SS-SSSS-S--SSSSS-SSSS-SSSSSSSSS
S------S--S----------------------S-------------S------------------------------S-
SSSS---------S--------------S--SSSS---------------------------------------------
-----------------------------S-----S--------------S-------------------S---------
---------------S--S--------------------------S----------------------------------
----S--------------------------------------------S-----S---------------S--------
S--------------------------SS---------------------------------------------------
------S--------------------------------------------------S----------------------
----S-----------------------S-----------S-----S-----S-----S---------------------
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---S------S----S----------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------------------------------------------------------------S--------
-------------------------------------------------------------S------------------
---S----------------------------S------------------------------S----------------
----------S-------SSSSS-S--S-SSS-S-SS-S-------------------S---------------------
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----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS--------------------S---------------------S------S----
----S---S--S----SSSS-----S-S----------------------------------------------------
-----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_280
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--------------------TGTGTATCGTTCCCCGCAAA----------------------------------------
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>reverse_1832
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-----------------------------------------------------------------------GTTCGTCAT
CGCGGAGAAGA---------------------------------------------------------------------
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>forward_482
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--------------------------------------------------------------CTACCCGCTCCATGGTCT
TG------------------------------------------------------------------------------
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>reverse_1984
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---------------------------------------------------------------CCGTGAAGGAGAGACCT
AGC-----------------------------------------------------------------------------
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