>input_sequence_66419
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-----------------------------------------------CTATATAACCCATA---CGACGTAGCCAACCAG
ATACCATACGAC---CTACGTTTCTTGCACACGTAGAACCTCCGAACACACAATGGCGTCCAAACCGATCTTGGCCGGCG
TCGTCCTCCTGATCGCCATCGCCGCCGCGGCAGTCACACCGGCATCCACGGCCGGAGCGAACCCCGTCGCCATCGGCGAT
GGCTCCGACGAGGCGGCAACGACATGCGTGCCGACGCTTGAACGGCTGCTGTCGTGCCTGGACTTCATCGAGCACCGCAC
CGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAACACCACGGTCGCCCAGCAGCCGTGCTGCCTCATGCATGTCCTGC
GCGGCGACGTCGCGCGGCTCATGGGGCCGGACTTCGACAGCGCCCGCGCCATGGTCAACGTCACCTCCAGGTGCCTCGGC
GACGGCTCCATCCTCATGTCCATCACTCGTTCGTGCGCAGGTTCGTGATCGTACGTACCCAGGTGTA--TTTTTAGTTTT
TTACTGCCG-ATCTGTTGTCATCTTCCTTGATTGTATGTTCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAA
TATCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCGTCATCCTCAGGTGAGCAGCTTATCAGTTCTGAGATCGACGTGCT
TTTGTGTATACGCGTGCGGGATTGATTGTTCCGACGTATGATTCCGTTTTCCGT-----------TTGATTCTCTGTATG
CAGGGGCAGGACGGCTGGAAGCCTTGTCTTACACCGTATTGCTAGTTGCACTCGTTGCAAGCTTCTTGTGATCGG-----
----TCGGCAAACTGGCGACCAGCTGGCTGTGGTTGGATGTGGAACAAATCTGTACCTGTTTGATTTTGAACGAA-----
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-----------------------------------
>chr2D_1_TraesCS2D01G116800
GAGGACCAGGCACCATAGCAGCAGCCCCACCTCCTCGTGGAGGCCGCTTTGACGAACGGAGAATTCGTCTGTCAGATGGA
GATCATGACGGAGCGATCGCTCTGTCAGTTGGGCTCGACGCCACCATCATCGGCGCGTGTCAACGAGGAGTCGTCATCCC
CGCCACGTTGCCGCGTGAAGCGGGAGCCGACGGGTCAAGGAGAAGTCGGTGTCGCCGCCGGCGCATCGCCGGTGCGCCCG
CATTGACCGGCCCGCAATGCCTGAGTGGCGGTCAGAGAGGCTCAGTGGCAGTATCGAAGGAGGAGGGCGCACAAGAAGGA
GCGGGAGCGGGGTGGAAAAGAATGGGATTGAGAGGGGGATTTGAGTGGGCTGGGGGTGTCGGAGTTCTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTTGAATGGCAAAACACGTCCGGACCGTGTGGTCCAAACGGTTGTGGGCGGTTTAAGGAGCGATATTGGAG
ATGCCCTTGTATTACTAAAAAATTCGTGAGAGGGAGAGAGGGGCCCGGAGAGATACTAATACACATGACTAGATTGACCC
AAGTGTATAGATATTACAACGATAAAGAAGAGCATAGCCGAGATAGCTAGATTTGTTGTGGTTGAGCCTGGCCACCCAGC
CTTAAGTCATAGACTTGGTCGCAGTGTTTCTATAAAGAAAGATTAGTAAAAAATTTGTTTTCAAACAAAAAGAGTCTTAC
TCTGAAATTCTGAATGCAGCTTTATCTGAA-------ACCCGCGTCACTATATAACCCATA---CGACGTAGCCAACCAG
ATACCATACGAC---CTACGTTTCTTGCACACGTAGAACCTCCGAACACACAATGGCGTCCAAACCGATCTTGGCCGGCG
TCGTCCTCCTGATCGCCATCGCCGCCGCGGCAGTCACACCGGCATCCACGGCCGGAGCGAACCCCGTCGCCATCGGCGAT
GGCTCCGACGAGGCGGCAACGACATGCGTGCCGACGCTTGAACGGCTGCTGTCGTGCCTGGACTTCATCGAGCACCGCAC
CGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAACACCACGGTCGCCCAGCAGCCGTGCTGCCTCATGCATGTCCTGC
GCGGCGACGTCGCGCGGCTCATGGGGCCGGACTTCGACAGCGCCCGCGCCATGGTCAACGTCACCTCCAGGTGCCTCGGC
GACGGCTCCATCCTCATGTCCATCACTCGTTCGTGCGCAGGTTCGTGATCGTACGTACCCAGGTGTA--TTTTTAGTTTT
TTACTGCCG-ATCTGTTGTCATCTTCCTTGATTGTATGTTCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAA
TATCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCGTCATCCTCAGGTGAGCAGCTTATCAGTTCTGAGATCGACGTGCT
TTTGTGTATACGCGTGCGGGATTGATTGTTCCGACGTATGATTCCGTTTTCCGT-----------TTGATTCTCTGTATG
CAGGGGCAGGACGGCTGGAAGCCTTGTCTTACACCGTATTGCTAGTTGCACTCGTTGCAAGCTTCTTGTGATCGG-----
----TCGGCAAACTGGCGACCAGCTGGCTGTGGTTGGATGTGGAACAAATCTGTACCTGTTTGATTTTGAACGAAATATA
GTTAATTCTTCTGTTTCTCGGTCTTTCTTTACCCTATGTTTATCACGATGGTTATATGTAAGTCGCATGAAATTACAATT
TGGGCTAGTCGATTTTTGGAAGAAAAAGTTCGCGGGAGGAAAGTAAGAAGATGCCGCCGCATCGCCAGAAAAGCTATCCA
CCATCTATCTTAAGGGTTTTTTGTTAATCAAAAGAGGGGGTTCCCTCCGATTTCATTAACGAAACCATCCAGAACACAAG
CGACCACACTGTCTATTTTAAGATGGAAGACTGGGGCGGCGGTGGGAGGCAATTGAGGGGAGGGCAGGGCGGCGGCGGCT
GGTGGTTAGGCCACAGGAGGATGGCTGGAGGTTGGAGAAGCTAAGCTGGCCATCCATATCACATCCGATGGTTTAAAACA
ATTGACCGACCAAAATATTTTTTAAAGCGACAGTCAAATAGTCTGTCCCTATGTTTATTCCGTAATTTACGCTTACACTT
AGCATCTGCAACAGCTTCCCAAAAAACCTCCCTCCATAAGTGCTCACTAGCAAATGTTTTCACGGCGTTGCAATGGGAAT
TTTTTATTGATTGGGCAGATATGATATAGATAAGACCTTTCCAGAACTATCAAGTGCAAACATTTGCCGGCTGTCCTAGT
TTATTCCATTTGCGGCTAATACCTTGACTACATAAAAGATGATGCTATGCCATTGAGGGCATCTCAAATATCGACACGCA
AATTTCCTCCCTCATTCCTCCGTGGATAGAGGATCAGCCCGTGGACACGGGTGTGGAAGGCGACCATCCAACATTGACCG
ATACATTTCAACAACTTTTTAAACAAACCGGACAAAATTCGTGCAAACATGGCAGATTTCCTACGAACCGGACGAAAACA
TTTACATTTTAGACATATTTACGGCAAGCGCGCAAGAGAGGCGGCCATGCCCGCCATAGCCGCGTTGAACCGGAACTTTG
TTGCGGAGCAGCGAGCACTCTATGAGACCGCACGT
>chr2B_895
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--------------TTGGTCGCAGTGTTTCTATAAAAAGGACTAGT-----AATGTTTTTTCAAAGGAGAGACCGGCAA-
--TGATACTCTGAATGCAGCTTTATCTGAA-------ACCCGCGTCACTATATAACCCATCCGGCGACGTAGCCAACCAG
ACACCATACGACGACCTAAGTTTCTTGCACACGCACAACTCCTGTACATGCAATGGGGTCCAAACCGTTCTTCGCCTGCG
CCGTCCTCCTGATCGCCATCGCCGCCGCGGCAGTCACGCCGGCGTCCGCGGCCGGAGCGAACCCCATCGCCATGGGCGGT
GGCTCCGACGAGACGGCAACAACATGCGTGCCGACGCTTGAGCGCCTGCTGTCGTGCCTGGACTTCATCGAGCACCGCAC
CGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAACACCACGGTGGCCCAGCAGCCGTGCTGCCTCATGCACGTCCTGC
GCGGCGACGTCGCGCGGCTCATGGGGCCGGACTTCGACAGCACCCGCGCCATGGTCAACGTCACCTCCCAGTGCCTCGGC
GACGGCTCGATCCTCATGTCCATCACTCGTTCGTGCGCAGGTTCGTGATCCTACGTACCCAAGTGTA--TTT--------
TTACTACCG-ATCTGTTGTAATCTTCCTTGATTCTATTTCCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAA
TACCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCGTCATCGTCAGGTGAGCAG---ATCAGTTCTAAGATCGCCGTGTT
TTTCTGTATGAG--TATGCG---GATTGTTCCGACGTATGATTCCGTTTGTCGATCGTTTGGTAATTGGTTCTCTGTGTG
CAGGAGCAGAACGGCTGGAAGGCTTGTCTTACGCCGTATTGCTAGTTGCACTCGTTGCAAGCTTCTTGTGAATCTTGTGA
ACTATCGGGAAACTGGCGATCAGCTGGCTGGACGTACA--TGGAGAAAATCTCGACACGTTTGATGTTGAACAAAATATA
GTTAATTCTTGTGTTTCTCTGTCATTCTTTAC------------------------------------------------
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>chr2A_963
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--TGATACTCTGAATGCAGCTTTATCTGAATTCTAAAACCCGCGTCACTATATAGCCCATCCGGCGACGTAGCCAACCGG
ACACCATACGACGACCTAAGTTTCTTGCACACGCACAACTCCCGTACACGCAATGGCGTCCAAACCGATCTTCGCCTGCG
TCGTCCTCCTGATCGCCATCGCCGCCGCGGCAATCACGCCGGCATCCGCGGCCGGAGCTAACCCCACCGCCGTCGGCGGT
GGCTCCGACGAGACGGCAACGACGTGCGTGCCGACGCTTGAGCGCCTTCTGTCGTGCCTGGACTTCATCGAGCACCGCAC
CGACGCGATCCCGCTGCCCTGCTGCGTCCAGGTGAACACCACGGTGGCGCAGCAGCCGTGCTGCCTCATGCACGTCCTGC
GCGGCGACGTCGCGCGGCTCATGGGGCCGGAGTTCGACAGCTCCCGCGCCATGGTCAACGTCACCTCCAGGTGCCTCGGC
GACGGCTCCATCCTCATGTCCATCACTCGTTCGTGCGCAGGTTCGTGATCGTACATACCGAGTGTATTTTTT--------
TTACTATCGAATCTGTTGCCATCGTCCTTGATTTTATGTTCTGTTCTTCAGGCAAGCCGCTTCCGCCGCTGACGCCTGAA
TATCCCTTCACTGCCGCGTTGCCGCCGCCGCCGCCGCCATCCTCAGGTGAGCAG---ATCAGTTCTGAGATCGCCGTGCT
TTTGTGTGTACGTATATGCA---GATTGTTCCGACGTATGACTCCGTTTGTCGATCGTTTGGTAATTGGTTCTCTGTGTG
CAGGATCAGAACGGCTGGAAGGCTTCTCTTACGCCGTATTGCTAGTTGCACTGGTTGCAAGCTTCTTGTGATCTG-----
----TCGGGAAACTGGCGATCAGCTGGCTGGACGTACA--TGGAGAAAATCTGGACACGTTTGATGTTGAACAAAATATA
GTTA----------------------------------------------------------------------------
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-----------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------------------S-SSSS-SSSSSSSS---S-S--------SS-S-SSSSSSSS-S
SS---S-S----------------------------------------------------S-------------------
-S----------------S--------------S-S---SS---S----S----------------------S---S---
-------------------------------------S---------S-----------------S------------S-
------------S----------------------------S--S-----------------------------------
---------------------------------------------S--------------------------S-------
-----------------------------------------S--------------------------------------
------------------------------------------------------------------------SSSSSSSS
-----S---------------------------S----------------------------------------------
------------------------------------------------------SSS----------------S------
------------SS-SS-S-SSS--------------------------SS--S--------------S--------S--
----S----S-----------S----------S----------------------------------------S------
--------S----------S----------SSSS-SS-SS----SS-------S--SS-------S------S-------
----------S--------S---S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_762
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----------------------TTCGTGAGAGGGAGAGAGGG--------------------------------------
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>reverse_2272
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-------------------------------TTGGAGAAGCTAAGCTGGCC-----------------------------
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-----------------------------------
