>input_sequence_66395
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------------------------------------------ATGGGATTCCTCAGGAAGTTCTCCAAGCAGACCGGCAA
GCTCAAGTCCCTTCTCGAGCTCACCGTCTCACGTGTAGCCATCGCCCGCAAGCCTCGCCTTGCTCGCAAGTCCATTGCTT
CCGGCGACGTCTGCCAGCTCCTCTCCCTCGGCCAAACCGACCGCGCTCTCCAGCGAGTGCGTGCCTAGCTATGCTATGGC
CTCCAAAGCATCTGCACATGTTATTCTTCTAGCGATCTTACATTTTCC---------TTTTTACTGATGCTAGCTTC--T
TTCTCTGCGCAAGTAGAGCAGGTCATAAAGGAGGACAACATGTTGGAGGCGCTCGGCATCATAGAGCTCTACTGCAAGTG
TCTCGTCAAGAAAGCCGCTCAGCTAGACAAGCCCAAGTACGTCTCTTGATCACACCTGATCTGATCTCTTAATTTCTTCT
CCTTTTTGTTAATGTCTTTAGATCATCCACTTCAATGTCAAATGTTTTGGGCAAGAAAACTAATATGTTTAGCGTACAGG
GAATGCGCCGAGGAGGTAAAGAAAGCGGCTGCCGGCATCATATTTGCTGCCAAGCGCTGCAGTGACCTGCCGGAGCTGCA
GTCTGCCCGCAAGATCCTCGCCGACAAGTTCGGCGACGATTTCACTGCCGACGCCAAGGTGGGCAGCGCGGTCGTCGACC
CGATGGTAAAAGTAGTTATAGTCTTCATTTCTAGGCGCCCATTGATTTGGAGTTGTAGAGGAAAGGTAGCAGTCACATGC
ATGATTTGTGTTGCCATTGCAGCTGGTGTGGAAGTTGTCCGGAGACAAGGCAAGCATTAGCCTGAAGAAGAAGGTGGCCA
AAGAGATCGCCGCCGAGAACAATATCTCGGTGGATTTGTCCAAGTCCCCATAA---------------------------
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>chr4A_1_TraesCS4A01G084900
ACAAATCATATGGTATCGTTCGACTTAGGCAAAAAAAAGTAGTTGAAACATACCCACGGTAACCTCATTGTAAACAACAT
GATAAGTTATGTATTGTAGGTGTGATAATTTACGTAGCCAGATGTGGTAACTTTTTACCTGAAAAAAAAGTCGTCAAAGC
ATATTAATATGGGATCTAGTTTCGAAGGTCTCCTCGTGACGAATCCTTTATGTGAAACAGTTTTTCAATTCGAACGACAG
TTTGAGGTACAAAACATGTTGAATTTTTTGTTTTTTAAAGAATCTGTTGACATCATTGATTTTGTTTTTTCTGCATTTAA
TTAGGAGCTTCTAATCCTAACATGCATGCAAAACTATCTAGCGTTGGGTGCGGGCTGCATGCAGCCACACGCATGATCGA
GGAAGCCAACTCATGGCAGAATTAGCGATTGGAGAAATTGTTCGGATCTATTCCTAGGATCAAAACGATCGGACATTATC
AAAGTCCATATATATAATCTATTTGAAATACAAGACAAGTTAAAATACTTGCTAGTTTATCCTATCTTATATTTTTAATA
CAATCACGACACTCAACAAAAAGAGTGAAAGTTTTCTAATGAATTCTTACAAAATTCATTTGAAATACCCTCAATCCGAA
AGGATCAAGCAGGGGATGTCCTTCTGTCTAATAGGAATTATTTTCCACATTTTTTATTAAAAAAACTTTCTTTACACGTT
TTGCTCCCTATTATGTGCACGTCCAGCCCTCATGTTCCAAATATGAAAGAAGTTTGTTTTA--TATAACTGAACTAACAG
CCTATGCACTAAAATTAGACTTCTAAAAACAGAGAAACAATGCCCTAGAAAACCTTTTTTCCTCCCAAGAACTCAGCTCC
TCTTCCCCCTACCACCCATCCAAGGACCAACGATACCGCCGCCGACCGCCGGTAGGCGCATCGTTGGTCCCGTCAAAAAC
TCCAACACCTCAAGGAACTCCGGGAAGAGCAGATCACCAGCCATGGGATTCCTCAGGAAGTTCTCCAAGCAGACCGGCAA
GCTCAAGTCCCTTCTCGAGCTCACCGTCTCACGTGTAGCCATCGCCCGCAAGCCTCGCCTTGCTCGCAAGTCCATTGCTT
CCGGCGACGTCTGCCAGCTCCTCTCCCTCGGCCAAACCGACCGCGCTCTCCAGCGAGTGCGTGCCTAGCTATGCTATGGC
CTCCAAAGCATCTGCACATGTTATTCTTCTAGCGATCTTACATTTTCC---------TTTTTACTGATGCTAGCTTC--T
TTCTCTGCGCAAGTAGAGCAGGTCATAAAGGAGGACAACATGTTGGAGGCGCTCGGCATCATAGAGCTCTACTGCAAGTG
TCTCGTCAAGAAAGCCGCTCAGCTAGACAAGCCCAAGTACGTCTCTTGATCACACCTGATCTGATCTCTTAATTTCTTCT
CCTTTTTGTTAATGTCTTTAGATCATCCACTTCAATGTCAAATGTTTTGGGCAAGAAAACTAATATGTTTAGCGTACAGG
GAATGCGCCGAGGAGGTAAAGAAAGCGGCTGCCGGCATCATATTTGCTGCCAAGCGCTGCAGTGACCTGCCGGAGCTGCA
GTCTGCCCGCAAGATCCTCGCCGACAAGTTCGGCGACGATTTCACTGCCGACGCCAAGGTGGGCAGCGCGGTCGTCGACC
CGATGGTAAAAGTAGTTATAGTCTTCATTTCTAGGCGCCCATTGATTTGGAGTTGTAGAGGAAAGGTAGCAGTCACATGC
ATGATTTGTGTTGCCATTGCAGCTGGTGTGGAAGTTGTCCGGAGACAAGGCAAGCATTAGCCTGAAGAAGAAGGTGGCCA
AAGAGATCGCCGCCGAGAACAATATCTCGGTGGATTTGTCCAAGTCCCCATAAGCAATGGCGGCGTTGTTCTACACGGTC
AGGAGATTGTCGTGTTTGGACTCATGGGTGCAAGTCCAGAGCCTGACGATGGTCGTCGTCGCTTTTGACAGGATGAATGC
CT-----TTG-----GACTAGAGTGACAACGACAATGCCTCGAGCATTTTCTACTCAGACGGATCAGATGATAGGCCGCT
GAAGCCGAAGATGGTGATATATAGCTTTCAGTGCGCACGATGAGACAAAGTCATTCCTC----TGCATCTGGCCCCAAAT
GCAACTGCTATGTGTAGGTTCAAAATTAGTATCGGAGGATGGTCATGAAGAACTATGGCTCACTGTACAAGAGAAGGGAA
GACATCTGTATTTTACTCTTTAAAACTAGACCAGAAGCTCCTGCGGTTTTATTAATTAAGTGGAGAATGTGAGACACAAA
CATCCGAGCCGAGACTTGAACACACATAGGCTAGGAGGCGCAACTGTATTTCACTCTTACACTTCGATTATGAAATTTGA
AAGTTCTTTGGCATCTACTATTTTAGTTGTCGCGCTCGGTTGGAAGGATGAATCTTGTAAGTTAAAAACATCTTGGATCA
ACATGTTCACATACGACACCCCGAGTGGCGGAGCCAGGATTTGAGTATAGGAGGGGCCGAGTACATATATTGATCTAATC
TCGTTGGTAATTACTCATCGCTGCTACTAAAATTGTCGATCATTGTGGGGGTGGGGGTGGGGAGCAGGCCCCTGGACATC
CCTCCCCCTCTTTTGTGAGGGGTGTTTGATTAGATGATGATAGAAGTTGAAGGCCCTCTCCATTCGGGTTGAATCGATGA
AATCTATGATGCTTCTTCCTATCTAGTACCTCAGTCCGAGTTTAAAAGTCCCCTGGATAAGAACTCTCATACCAAGGTAA
CTACAACGGGTTTCACATAATATTTAAGTGGCTGCATGCATTGGCCGCATGGTTGCAGTTAACATTAGTATTAAAAGAAA
ATATCTCAAGCTCCACTGCCGTCACCA
>chr4D_542
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-------------------------------------------------------------CTATCTTATGTTTCCAATA
CAATCACGGCACTCAACAAAAAGAGTGAAAGTTTTCTAATGAATTCTTACAATATTCATTTGAAAG--CCTCAATCCGAA
AGGATCAAGCAGGGGATGTCCTTCTGTCTAATAGGAATTATTTTCCACATTTTTTATTAAGAAAACTTTCTTTACACGTT
TTGCTCCCTATTATGTGCACGTCCAGCCCTCGTATTCCAAATATGAAAGAAGTTCGTTTTATATATAACTGAACTAACAG
CCTGTGCACTAAAATTAGACTTCCAAAAACAGAGAAACACTGCCCTAGAAAACCTTTGTTCCTCCCAAGAACTCAGCTCC
TCCTCCCCCTACCACCCATCCAAGGACCAACGATACCGCCGCCGACCGCCGGTAGGCGCATCGTTGGTCCCGCCAAAGAC
TCCAACACCTCAAGGAACTCCGGCAAGAGCAGATCACCAGCCATGGGATTCCTCAGGAAGTTCTCCAAGCAGACCCGCAA
GCTCAAGTCCCTTCTCGAGCTCACCGTCTCACGTGTAGCCATCGCCCGCAAGCCGCGCCTTGCTCGCAAGTCCATTGCCT
CCGGCGACGTCTGCCAGCTCCTCTCCCTCGGCCAAACCGACCGCGCTCTCCAGCGTGTGCGTGCCTAGCTATGGCCTCC-
-----AAGCATCTGAACATGTTATTCTTCTAGCGATCTTACATTTTCTAGTTTCC-TTTTTTACTGATGCTGGCCTTTTT
TTCTCTGCGCAGGTAGAGCAGGTCATAAAGGAGGACAACATGTTGGAGGCGCTCGGCATCATAGAGCTCTACTGCAAGTG
CCTTGTCAAGAAAGCCGATCAGCTAGACAAGCCCAAGTACGTCTCTTGATCACACTTGATCTGATCTCTTAATTTCTTCT
CCTTTTTGTTAATGCTTTTAGATCATCCACCTCAATGTCAA-TGTTTTGGGCAAGAAAACTAATATGTTTAGCGTACAGG
GAATGCAGCGAGGAGGTAAAGGAAGCGGCTGCCGGCCTCATATTTGCTGCCAAGCGGTGCAGTGACCTGCCGGAGCTGCA
GTCTGCCCGCAAGATCCTCGCCGACAAGTTCGGCGACGATTTCACTGCCGACGCCAAGGTGGGCACCGCGGTCGTCGACC
CGATGGTAAA---AGTTATAGTCTTCGTTTCTAGGCGTCCACTGATTTGGAGTTGTAGAGGAAAGGTAGCAGTCACATGC
ATGATTTGTGTTGCCATTGCAGCTGGTGTGGAAGTTGTCCGGAGACACGACAAGCATTAGCCTGAAGAAGAAGGTGACCA
AAGAGATCGCCGCCGAGAACAATATCTCGCTGGATTTGTCCAAGTCCCCATAAGCAATGGCAGCGTTGTTCTCCACGGTC
AGGAGATTGTCGTGTTTGGACTCATGGGTGCAAGTCCAGAGCCTGACGATGGCCGTCGTCGCTTTTGACAGGATGCATGC
CTCGAGTTTG-----GACTAGAGTGACAACGACAATGCCTCGAGCATTTTCTAATCTTATGGATCGGATGATAGGCCGCT
GAAGCCGAAGATGACG----ATAGCTTTCAGTGCGCACGAGGAGACAAAGTCATCCC----TCTGCATCTGGCCCAAAAT
GTAACTGCTGTGTGTAGGTTCAAAATTAGTATCGGAGGATGGTCATGAAGAACTATGGCTCACTATACAAGAGAAGGGAA
GACATCTGTATTTTACTCTTTAAAACTAGACCAGAAGCTCCTTCGGTTTTATTAATTAAGAGGAGAATGTGAAACACAA-
CATCGGAGCCGGAACTTGAACACGCATAGGCTAGGAGACACAACTGTATT------------------------------
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>chr4B_692
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---------------------------------------------------TTTTATTAAGAAAACTTTCTTCACACGTT
TTGCTCCCTATTATGTGCACGTCCAGCCCTCATGTTCCAAATATGAAAGAAGTTCGTTTTATG--TAACTGAACCAACAG
CCTGTGCACTAAAATTAGACTTCCAAAAACAGAGAAACACTGCCCTAGAAAACCTTTGTTCCTCCGAATAACTCAGCTCC
TCCTCCCCCTACCACCCATCCAAGGACCAACGATACCGCCGCCGACCGCCGGTAGGCGCATCGTTGGTCCGGTCAAAAAC
TCCAACACCTCAAGGAACTCCGGCAAGACCAGATCACCAGTCATGGGATTCCTCAGGAAGTTCTCCAAGCAGACCCGCAA
GCTCAAGTCCCTTCTCGAGCTCACCGTCTCACGTGTAGCCATCGCCCGCAAGCCGCGCCTTGCTCGCAAGTCCATTGCCT
CCGGCGACGTCTGCCAGCTCCTCTCCCTCGGCCAAACCGACCGCGCTCTCCAGCGTGTGCGTGCCTAGCTATGGCCTCC-
-----AAGCATCTGA-CATGTTATTCTTCTAAAGATCTTACATTTTCTTTTTCCTTTTTTTTACTGATGCTGGCTTT--T
TCTTCTGAGCAGGTAGAGCAGGTCATAAAGGAGGACAACATGTTGGAGGCGCTCGGCATCATAGAGCTCTACTGCAAGTG
CCTTGTCAAGAAAGCCGATCAGCTAGACAAGCCCAAGTACGTCTCTTGATCACACCTGATCTGATCTCTTAATTTCTTCT
CCTTTTTGTTAATGCTTTTAGATCATCCACTTCAATGTCAA-TGTTTTGGGCAAGAAAACTAATATGTTTAGCGTACAGG
GAATGCAGCGAGGAGGTAAAGGAAGCAGTTGCCGGACTCGTATTTGCTGCCAAGCGGTGCAGTGACCTGCCGGAGCTACA
GTCTGCCCGCAACATCCTCGTCGACAAGTTCGGCGACGATATCACTGCCGACGCCAAGGTGGGCACCGCGGTCGTCGAGC
CGATGGTAAA---AGTTATAGTCTTCATTTCTAGGCGTCCATTGATTTGGAGTTGTAGAGGAAAGGTAGCAGTCACATGC
ATGATTTGTGTTACCATTGCAGCTGGTGTGGAAGTTGTCCGGAGACACGACAAGCATTAGCCTGAAGAAGAAGGTGCTCA
AAGAGATCGCCGCCGAGAACAATATCTCGGTGGATTTGTCCAAGTCCCCATAAGCAATGGCGGCGTTGTTCCGCACGGTC
AGGAGATTGTCGTGTTTGGACTCATGGGTGCAAGTCCAGAGCCTGACGATGGCCGTCGTCGCTTTTGACAGGATGAATGC
CT-----TTGGACTAGACTAGAGTGACACCGATAATGCCTCGAGCATTTTCTACTCTTATGGATCGGATGATAGGCCGCT
GAAGCCGAAGATGGCG----ATAGCTTTCAGTGCGCACGAGGAGACAAAGTCATTCCTCGATCTGCATCTGGCCCAAAAT
GTAATTGCTATGTGTAGGTTCAAAATTAGTATCGGAGGATGGTCATGAAGAACTATGGCTCACTGTACAAGAGAAGGGAA
GACATCTGTATTTTACTCTTTAAAACTAGACCAGAAGCTCCTACGGTTTTATTAATTAAGAGGAGAATGTGAGACACAA-
CATCCGAGCCGAGACTTGAACACGCATAGGCTAGGAGACACAACTGTATTTCACTCTTACACTTCGATTATGAAATTTGA
AAGTTCTTTGGCATCTACT---TTAGTTGTCGCGCTCAGTTGGAAATATAAATCTTGTAAGTTAAAAACATCTTGGATCA
ACACGTTCACATACGACACCCC----------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S---SS----
--------S-------------------------------------------S------------SSS------------
------------------------------------------------------------S-------------------
------------------------------------------------------S-------------------------
---S-------------------S---------------S-----------------S----------------------
--S-----------------------------------------------------------------------------
-----------------------S---------------------------------------------------S----
------------------------------------------------------S-----------------------S-
-------------------------------------------------------S-----------------SSS-SSS
SSSSS---------S--------------------------------S-----------------------S----S---
-----------S--------------------------------------------------------------------
S--S-------------S--------------------------------------------------------------
--------------SS-------------------------S--------------------------------------
------SS-------------S--------------S-------------------S-----------------------
-----------------------------------------------------------------S--------------
----------SSS------------------------S------------------------------------------
-----------------------------------------------S-S--------------------------S---
------------------------------------------------------------------------S-------
----------------------------------------------------S---------------------------
--------------------------------------------------------SS-S-----S--------------
--------------S-SSSS--------------------S----------------------------------S----
-S------------------------------------------------------------------------------
------------------------------------------S-----------------S------------------S
-----------------------S-------------S-S----------------------------------------
-------------------SSS---------------S-------SS--S------------------------------
---S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_206
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--------------------------GGTCTCCTCGTGACGAATCC----------------------------------
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>reverse_2066
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-----------------------------------------------------------------AGATGATAGGCCGCT
GAAGC---------------------------------------------------------------------------
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