>input_sequence_66388
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--------------------------------------------------------ATGCAATCCTCGGCCGTGCGCGCC
ACCCCGCAGTGGCTGCGTGGCCTGCTGTCGGAGGAATTCTTCGACGCGTGCGCCGTGCACCCGGCGGAGCGCAAGAACGA
CAAGAACCACTTCTGCGCGGACTGCGCCGCCGCCCTCTGTCGCCACTGCCTCCCCCACGATCCCTCCCACAACGTCCTCC
AGGTAATACATTTGCGAGCGACGCTTGGTGATCAGATGTCCTCACCTCGCCGTGCTCTGATCGGTCTTGTTATCTGGTAT
GAGGGGGGCAAAAAAGATCTGGAAGTACGCGTCCTGCTTCGTCGTCCGCGTCGACGACCTGAAACTGTTCGACTGCACCG
GCATCCAGGTACGCACACCAAGATCGCCCAATTCAGGCGTGGCCGTTCTGTTTCTCGATCGGCGCTCAAATGCATGCGCG
GCCGCATGCAGTCGCACACGGTGAGCGATCACGAGGTGGTGTTCCTGAACGAGCGCACGGCGAGGAAGCGCTCGGCCTGC
GCCGAGAACCCCTGCGCCGCGTGCGCCCGGCCGCTCTCGTCAGGGCACGAGTACTGCTCCCTCTTCTGCAAGGTAAACGC
CATGTTGTCGTCTGGAAGTATGCCTAGTGTCACGTACGTGCGTGCACAGTTTGACTCGAAGAACTGGGGGACGCGTGCAT
GTAGGTGAAGCATCTGGGGGAGAGCGAGCGGGGGCTGAGATGCGCGTTACGCGTGAACAGGAAG---GCGGCCGCCGCGG
GCGAGGAGGCTGCCGGGTCGGAGCCGCAGAACGGGAAGCGGCCGAGGGCGGCGTCGTCGGAGGCGGAGCCGAGCTGTGGC
GGGTCGTCCGGTAAGCGGAGCCGGAAGCAGCTAGCGCCGGCTCGCTCACCATTCTGTTGA--------------------
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>chr6A_1_TraesCS6A01G248200
GGCTTTGCGTGGGTGGTGGGCTGGTGACGGCAGGCGACTCGCGATCGCGATTCCCA------AGACGATAGGATGCGCTC
GCGATTAGTTTTCTAATAATTAGATGTGTTCATGATTAGTTATCTAATAGGAAGTGTCCGTGATTAGTTTCCTAATAATT
AGATGCGTCCATGATTAATTTCTTAATAGAATGCGCG---------------------------CGTGATTATTTTCCTA
ATAATAG-------------------------------GTTGCGCCCGTGATTAATTTTCTAATAATTAGAT--------
--------------------GCGCCCGTGATTAGTTTTTTAATACGA-GTGTCCGTGATTATAGTTTCCTAATTGACTGG
ACATGGACTT-TCATATTTTCCTCCGCGGTGGAGTACGGTCAGTCAATATAAATTGCTAAGTGCACACAAAGAATAAATT
AGGTTAAGACTAGCCGTTAGATTGAGTTTAGTGAGACTAATCATGCGGTGGTAATGTATTCGTGTACGTTTTATGGGGTG
CACTTAGAGAAGATAATGTTTGCTCTTTTATA--AGTAGTATAGATAAGTGCACACAGAGAACAAATTAGGTTAAGGCTA
GCTATTAGATTAAGTTTAGTGGCTAATCATACGATGGTAATGTATTCGTGTATGTTTTGTGGGATGCACTTAGAAAAGAT
AATGTTTGCTTTTTTATAAGTAGTATAGAAGTATAGAATAGATATAGGTAGTATAGATGCCGGTGAGCGTCGGACAGCGA
TTCTGCTAGAGCGGTTTTCTCGGCCAAAAGTTAGGTTGCTGGACGATTATGCTTGACGGGTGGAGTTGCTGTAAAACAGT
AGTAGATCGCTGCATAGAATCGCCTCCATCTGCAACGGCAGAAGTGCCGAACGCCCCGCGCTTTTCGCTCTTTGAATCCG
TCCCACCCAACGGCCGCAACCCAATTCAACCATTCATCCACCACGCCTGGAGGCGCGTCTCCGGCACCGATCGACCCCCG
CGCCGTGTGCGCCCACCGTAGGTAGCCAGGACCGGCTGGCGCGTGGCGGGGCGGCGATGCAATCCTCGGCCGTGCGCGCC
ACCCCGCAGTGGCTGCGTGGCCTGCTGTCGGAGGAATTCTTCGACGCGTGCGCCGTGCACCCGGCGGAGCGCAAGAACGA
CAAGAACCACTTCTGCGCGGACTGCGCCGCCGCCCTCTGTCGCCACTGCCTCCCCCACGATCCCTCCCACAACGTCCTCC
AGGTAATACATTTGCGAGCGACGCTTGGTGATCAGATGTCCTCACCTCGCCGTGCTCTGATCGGTCTTGTTATCTGGTAT
GAGGGGGGCAAAAAAGATCTGGAAGTACGCGTCCTGCTTCGTCGTCCGCGTCGACGACCTGAAACTGTTCGACTGCACCG
GCATCCAGGTACGCACACCAAGATCGCCCAATTCAGGCGTGGCCGTTCTGTTTCTCGATCGGCGCTCAAATGCATGCGCG
GCCGCATGCAGTCGCACACGGTGAGCGATCACGAGGTGGTGTTCCTGAACGAGCGCACGGCGAGGAAGCGCTCGGCCTGC
GCCGAGAACCCCTGCGCCGCGTGCGCCCGGCCGCTCTCGTCAGGGCACGAGTACTGCTCCCTCTTCTGCAAGGTAAACGC
CATGTTGTCGTCTGGAAGTATGCCTAGTGTCACGTACGTGCGTGCACAGTTTGACTCGAAGAACTGGGGGACGCGTGCAT
GTAGGTGAAGCATCTGGGGGAGAGCGAGCGGGGGCTGAGATGCGCGTTACGCGTGAACAGGAAG---GCGGCCGCCGCGG
GCGAGGAGGCTGCCGGGTCGGAGCCGCAGAACGGGAAGCGGCCGAGGGCGGCGTCGTCGGAGGCGGAGCCGAGCTGTGGC
GGGTCGTCCGGTAAGCGGAGCCGGAAGCAGCTAGCGCCGGCTCGCTCACCATTCTGTTGAGGAAGTGGGCCGGGCTGTTG
GGCCTTAGACGTATTCCCGGGTCATTG--TAGTTGGGCTGTTGTTGTTCTTCGTTATACTTCTGTTGTCATTTTCATATA
TATATATTTTAGGGCAACTACAAAAAACTTTTTAGGGACCCCTCCAAAAATATTTTTTAGGGGAAGTCATTTTCATTTTC
TTTAGAGGCTGTGAAAAAAGTACACCTTAGTGCAATATTGTGTTCTTCGGCATTTACGTTGGTTAATTTTAGTGAAACCA
GCAGGTAAATTTGCAGGAACTGTGTAGGGTTGTCCAAAAATGTTTTTTCACGGGTTGTCCAAAAACTTTTTTTCACTCGA
ACCATGAAATGTGTGGTTCGTGGGAGCTATAGATCGAATCAATGAAGCAAATCGAAATGTATCAATTGCCGTCGGTTTTT
TGTGACACCCCCTCCCCCTGCCTAGATTTGGCGTCGTTGTCGAATGTTCCTCTTTTCCAAGGATGATTTTTTTCCACATA
GGTTTGTATGTTTAAAAAGGTCATCCGGCCAACCACATTGCTCCATGACGCTTTCTTGTTTGCTCCCCTCCTCCCACACC
CACACACACAATTCTCTCTTGCTAATTCCCATCACTGCATCTTTGTCCGCCCACGATCTCCTCTCTTCCTTCTTTTTAGT
GGGATTCTCCACATTTCATGCTTCTTCTCCTACTCCACCTTGATGAAAGCGCATGAAGATCTCACGACTCAGGAATCATC
TTGAAGCTCGAGGTGGGGCTCGGCACTAGAGGTCCCAAATGCGTCGAGCTTGGGGAGAATGATGCCCAAGGGTGGATGGG
TCTAGGCAGCTCACATGTTGATAGTTGGACTGCCAGAGGTAGCAGGTTTGAGGTTATTTTTTCTACTTTGCACATGTTTT
TTCAACATACTCATATACTTTTTGCTATGTTCACGTTGGTGTCATATTGCGATAACTCGAATTATTTGTTGCAAATGACT
TGGCTCATGCTACAAAGGCATA
>chr6A_7
GCA------TGGGTGGTGGGCTGGTGACGGCAGGCGACTCGCGATCGCGGTTCCCTGATAGGAGACGATAGGATGCGCTC
GCGATTAGTTCCCTAATAATTAGATGCATTCATGATTAGTTATCTAATA----------------------------ATT
AGATGCGTTTGTGATTAATTTCCTAATAGGATGCGTGATTATTTTTCTGATAATAAGATGTGTCCGTGATTAGTTTCCTA
ATAATAC-------------------------------GATGCGTTTGTGATTAGTTTCCTAATAATTAGAT--------
--------------------GCGCCCGTGATTAGTTTCTTAATAGGATGTGTCCGTGATTATAGTTTTCTAATTAACCAG
GCGTGGAC-TTTCATATTTTTCTCCGCGGTGGAGTAGGGTCAGTCAATGTAAATTGCTAAGTGCACGCAGAGAACAGATT
AGGCTAAGGCTAGCCGTTAGATTGAGTTTAGTAGGACTAATCATGCGATGGTAATGTATCTGCGTACGTTTTGTAGGGTG
CACTTAAAGAAAATAATATTTGCTCTTTTATATAAGTAGTATAGAT----------------------------------
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>chr3B_7
------GCGTGGGTGGTGGGCTGGTGACGACAGGTGACTCGCGATCGCGATTCCCTCATAGGAGACGATAGGATGCACTC
GCGATTAGTTTCCTAATAATTAGATGCGTTCGTGATTAGTTATCTAATAGGATGCGTCCGTGATTAGTTTCCTAATAATT
AGATGTGTTCATGATTAATTTTCTAATAGGATGCGCT---------------------------CGTGATTATTTTCCTA
ATAATAGAATGCACCCGTGATTAGTTTCCTAATAATAGGATGCGTTTGTGATTAGTTTCCTAATAATTAGAT--------
--------------------G----------------------------TGTCCGTGATTATAGTTTCCTAATTGACCAG
GCGTGGAC-T-TCATATTTTCCTCCACGGTGGAGTACGGTCAGTCAATGTAAATTGCTAAGTGCACACAGAGAACAGATT
AGGTTAAGGCTAGCCGTTAGATTGAGTTTAGTGGGACTAATCATGCGGTGGTAATGTATCCGTGTACGTTTTGTGGGGTG
CACTTAAAGAAAATTATGTTTGCTCTTTTATA--AGTAGTATAGA-----------------------------------
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>chr3A_7
------GCGTGGGTGGTGGGCTGGTGACAGCTGGCGACTCGCGATCACGATTCCCTGATAGGAGACC-TAGGATGCGCTC
GCGGTTAGTTTCCTAATAATTAGATGCGTTCGTGATTAGTTATCTAATAGGATGCAGTCATGATTAGTTTCCTAATAATT
AGATGTGTCTGTGATTAATTTCCTAATAGGATG-GCT---------------------------CGTAATTATTTTCCTA
ATAATAG-------------------------------GATGGGTTTGTGATTACTTTCTTAATAATTAGATGTGCCCGT
GATTAGTTTCTTAATAGGATG----------------------------TGTCCGTAATTATAGTTTCCTAATTGACCAG
GCATGGACTT-TCATATTTTTCTCCGCGGTGGAGTACGGTCAGTCAATGTAAATTGCTAAATGCACACAGAGAACAGATT
CGGTTAAGGCTAGCCGTTAGATTGAGTTTAGTGGGACTAATCATGCGGTGGTAATGTATCCGTGTACGTTTTGTGGGGTG
CACTTAGAGAAGATAATGTTTGTTCTTTTATA--AGTAGTATAGAATAAG------------------------------
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>chr2A_9
--------GTGGATGGTGGGTTGGTGACGGCAGGCGACTCGCAATCGCGATTCCCTGATAGGAGACGATAGGATGCGCTC
GCGATTAGTTTGTAAATAATTAGATGCGTTCGTGATTAGTTATCTAGTAGGATGTGTTCGTGATTAGTTTCTTAATAATT
AGATGTGTCCGTGATTAATTTCCTAATAGGATGCACA---------------------------CGTGATTATTTTCCTA
ATCATAG-------------------------------GATGCGTTTGTGATTAGCTTCCTACTAATTAGATGTGCCCGT
GATTAGTTTCTTAATAGGATG----------------------------TGTCTGTGATTATAGTTTCCTTATTGACCAG
GCATGAACTT-TCATATTTTTCTCCGCGGTGGAGTATGGTCAGTGAATGTAAATTGCTAAGTGCACACAGAGAACAGAAT
AGGTTAAGCCTAGCTGTTAGATTGAGTTTAGTGAAACTAATCATGCGGTGGTAATGTATCCATGTACGTTTTGTGGTGTG
CACTTAGAGAAAATAATGTTTGCTCTTTTATA--AGTAGTATAGA-----------------------------------
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>chr6B_681
ATGCCGGT------------------------------------------------------------------------
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---------------------------------------------------------------TGAGCGTCGGACAGCGA
TTCTGCTAGAGCGGTTTTCTCGGCCAATTATTAGGTTGCTGGACGATTATGCTTGACGGGTGGAGTTTTGCTGTAGAAC-
AGTAGATCGCTGCATAGAATCACCTCCATCTGCAACGGTAGAAGTGCCGAACGCCCCGCGCTTCTCGCTCTTTGAATCCG
TCCCACCCAACGGCCGCAACCCAATTCAACCATTCATCCACCACGACTGGAGGCGCGTCTCCGGCACCGATTGACCCCCG
CGCCGTGTGCGCCCACCGTAGGTAGCCAGGACCGGCTGGCGCGTGGCGGGGCGGCGATGCAATCCTCGGCCGTCCGCGCC
ACCCCGCAGTGGCTGCGTGGCCTGCTGTCGGAGGAATTCTTCGACGCGTGCGCCGTGCACCCGGCGGAGCGCAAGAACGA
CAAGAACCACTTATGCGCCGACTGCGCCGCCGCCCTCTGCCGCCACTGCCTCCCGCACGATCCCTCCCACAACGTCCTTC
AGG---TACATTTTCGCGCGTCGCTTGGTGATCAGATGTCCTCACCTCGCCGTGCTCTGATCGGTCTTGTTATTTCGTAT
GACGGCGG--AAAAAGATTTGGAAGTACGCGTCCTGCTTCGTCGTCCGCGTCGACGACCTGAAACTCTTCGATTGCACCG
GCATCCAGGTACGCGCACCAAAGTCGCCCAATTCAGGCGTGACTGTTCTGTTTCTCTATCGGTGCTCAAATGCATGCGCG
GCCGCATGCAGTCGCACACGGTGAGCGATCACGAGGTGGTGTTCCTGAACGAGCGCACGGCGAGGAAGCGCTCGGCTTGC
GCGGAGAACCCCTGCGCCGCGTGCGCCCGGCCGCTCTCGTCAGGGCACGACTACTGCTCCCTCTTCTGCAAGGTAAACGC
CATGTCGTCGTCTGGAAGTATGCATAGCGTCACGTACGTGCGTGCACAGCTTGACTCGAAGAACTGGGGGACGCGTGCAT
GCAGGTGAAGCATCTGGGGGAGAGCGAGCGGGGGCTGAGATGCGCGTTACGCGTGAACAGGAAGGCGGCGGCGGCGGCTG
GTGAGGAGGCTGCCGTGTCGGAGCCGCAGAACGGGAAGCGGCCGAGGGCGGCGTCGTCAGAGGCGGGGCCGAGCTGTGGC
GGGTCGTCCGGTAAGCGGAGCCGGAAGCAGCTAGCGCCGGCTCGCTCACCATTCTGTTGAGGAAGTGGGCCAGGCTGGTG
GACCTTACACGTATTCCCCGGTAGTTCAATAGTTGGGCTGTTGTTGT---------------------------------
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>chr6D_778
AAACACGTCC----------------------------------------------------------------------
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--TAGATCGCTGCATAGAATCACCTCCATCTGCAACGGTAGAAGTGCCGAACGCCCCGCGCTTTTCGCTCTTTGAATCCG
TCCCACCCAACGGCCGCAACCCAATTCAACCATTCATCCACCACGCCTGGAGGCGCGTCTCCGGCACCGATCGACCCCCG
CGCGGTGTGCGCCCACCGTAGGTAGCCAGGACCGGCTGGCGCGTGGCGGGGCGGCGATGCAGTCCTCGGCCGTGCGCGGC
ACCCCGCAGTGGCTGCGTGGCCTGCTGTCGGAGGAATTCTTCGACGCGTGCGCCGTGCACCCGGCGGAGCGCAAGAACGA
CAAGAACCACTTCTGCGCCGACTGCGCCGCCGCCCTCTGCCGCCACTGCCTCCCCCACGATCCCTCCCACAACGTCCTCC
AGG---TACATCTGCGCTCGTCGCTTGGTGATCAGATGTCCTCACCTCGCCGTGCTCTGATCGATCTTGTTATTTGGTAT
GAGGGGGGCAAAAAAGATCTGGAAGTACGCGTCCTGCTTCGTCGTCCGCGTCGACGACCTGAAGCTGTTCGACTGCACAG
GCATCCAGGTACGCACACCAAAATCGCCAAATTCAGGCGTGGCTGTTCTGTTTATCGATCGGCGCTCAAATGCATGCGCG
GCCGCATGCAGTCGCACACGGTGAGCGATCACGAGGTGGTGTTCCTGAACGAGCGCACGGCGAGGAAGCGCTCGGCTTGC
GCCGAGAACCCCTGCGCCGCGTGCGCCCGGCCGCTCTCGTCAGGGCACGACTACTGCTCCCTCTTCTGCAAGGTAAACGC
CATGTCGTCGTCTGGAAGTGTGCGTAGTGTCACGCACGTGCGTGCACAGCCTGACTCGAAGAACTGGGGGACGCGTGCAT
GCAGGTGAAGCATCTGGGGGAGAGCGAGCGGGGGCTGAGATGCGCGTTACGCGTGAACAGGAAG---GCGGCGGCCGCGG
GTGAGGAGGCTGCCGGGTCGGAGCCGCAGAACGGGAAGCGGCCAAGGGCGTCGTCGTCGAAGGCGGGGCCGAGCTGTGGC
GGGTCGTCCGGTAAGCGGAGCCGGAAGCAGCTAGCGCCGGCTCGCTCACCATTCTGTTGAGGAAGTGGGCCGGGCTGTTG
GACCTTAGACGTATTCCCGGGCCATTG--TAGTTGTGCTGTTG-------------------------------------
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>SNPs
-SSSSS-------------------------------------------------S------------------------
-----------S--------------S-------------------------S---------------------------
----------------------S------S--------------------------------------------------
---------------------------------------S----SSS-------S---S---------------------
-------------------------------------S------S--------------------------------SS-
S-----------------------------------------------S--------------------S----S-S---
--------S--------------------------------------------------S------------S-------
----------------------------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------
---------------------------SSS-------------------------------------SSSS-SS-SS-SS
---------------------S----------------S-----------------------------------------
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------------------S--------------------S----------------------------------------
---SSS----------S---S----------------------------------------------------S------
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---------------------S---------------------S------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------S-----------------------------
-----S-----------------S-------------------------S------------------------------
-S----------------------------------------------------------------------S-------
-S----------------------------------------------------------------S-------------
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-S---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_874
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------------------------------------------------------GACGGGTGGAGTTGCTGTAA------
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>reverse_2776
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-------------------------------------------------------AGAATGATGCCCAAGGGTGG-----
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