>input_sequence_66380
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----------------ATG------------GCCGCCGCCGGATCGGCCGTCTTCCCCGCGCAGCGGCTCCAGGTAA---
---------GCAGCCGCCGGAGCGCGGC---------GTGCTTCTCGAGGCAGCAGAGCTTCCCGTCCATCTCGATCCGG
TCGGCTCCCACCAAGAAGCGCTTCCTCCACCTGGCTTGCTCGGTACAC------------------TCCTGCATTTCACA
CCATCTTCTTCATGCTCGTGACTGCAATGGCCGGG--------------------ACAGCAAAATGCTCCTACCAA----
-----------------ACTCATGCTCAGTGCCTCTCAACACTGAACTAGTACTCTGTTTGGC-----------------
----GACGTGTCACTCAAGATCTGCTCTGAATTTCCAAAATCCAAAATCCTTGGACAGGCCAAGCAGGACACCATCGACA
AGGTCTGCGGGATCGTCAAGAAGCAGCTGGCCGTCGCCGAGGGCACCGTCGTCAGCGGAGAGACCAAGTTCGCCGACCTC
GGGGCCGATTCGCTCGACACGGTAATTCCCTC---CCCCCGCCCGACTCACCGGTGATTGCTCAACATGGATGGAGCTAC
AACCTCATCAGCCTACTCTAGAAAAGTTGGAAACAACACCATAAATACATCTTAGCTTCAGTGAATTCGATCCGACTTTT
TT---ACAGTCTTGTGTACTCTTCCAAAATATACAACCAATTTCACATGTTATCCTCGTGCGTGATTATTCCATAATATA
GAACCATTTTCTGCATTCTTCATAACATTCTT----CATA--ATATAGAACCATTTTCTGCATTCCATAATATAGAAC--
--------------------------CAAACAATGTTGCAGGTTGAGATCGTGATGGGTCTGGAGGAGGCATTCAGCATC
ACGGTGGACGAATCGAGCGCCCAGGAGATCAGGACCGTGGAGGACGCCGCGTCTCTCATCGACAAGCTCGTGACAGACAA
GGATTCTTAG----------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G319900
TTTGTGCCTTTCCAGCCTTAATGGCCGCCTTAGTAGTTGTTGCAGGCATCAAATATAGTACCACATGTCTCTCAAGCACT
TTTGCATCAAGAGCCATCGGCTGGGAGTCTTCAAATAAGAGAGAAAGATCTAGGTGTCGGACATAGCAGTAGCTTGACTA
TGGTCTTCAG--------TAGTGATGTCCTAGAATTGAACAAAAACAATGCATCTGTCACGCTAGCATACTACATATGGA
CTGGTCACCAAGCTCAACACACAAGCATATGTAGCAAGCCATCATGGACCGATCATGAAGTTCATCAACACACTACCACA
TGTACCGTACGACACATGGACCGACCGTCAAGCTCAACAA-----CACATCTTCCATAGTAGCATTGAAACCGACATGGA
CAACATTTAAATCTACCAGAACAAGGCGAACATCATCATCGCCGAAACGG-GAAGTCTACCATGCTACCAAAACGGCACC
GCCAGCATCTGGTCTATCACAACCTCAGACAACATCATGAAGCAATACTTGCATAACCTACCATTCCACCTGCAGATCTA
CTCGTTCGTACCACATGCTCACAGATGTATGGTACAACGTG--GT-AGTGACTGAACTTGCAACCGTCCAAGGAGCAGGG
AGGAGGC--GGGGAACAACTCAACCAACCAACCGTGCGTGCGTGCGTGCGTGCG--------------------------
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-----------------------------------------------------------------GTGCGGGAGGTCATG
AAGAAGAAGGAGAAGCCTCCAAGGGTGGCTGCGTGCA-----------TGCTACGGCCTACGGCCTTGTTTGGTAATCGC
AACAAGGAACGGGACGGACGTACGGTGGCGGTGGAACGGTGATCCCAATGCCATGGCCGGTCT------TC---TGTGTG
TGGGTCGATACAACCGAGGCCGCCTCGCCGTCCCCGCCACCGCCAC----CGCCACCGCCCCATCATAAAACACACGCGC
ACCCGCACTCCCGGCCTCCTCATTCCTCCCGTCACCTAGCCTAGCTCCACCT-CCACCTCCGTCGTGCCTCGGCTAC-CT
ACCTCATTCACCCGCCATG------------GCCGCCGCCGGATCGGCCGTCTTCCCCGCGCAGCGGCTCCAGGTAA---
---------GCAGCCGCCGGAGCGCGGC---------GTGCTTCTCGAGGCAGCAGAGCTTCCCGTCCATCTCGATCCGG
TCGGCTCCCACCAAGAAGCGCTTCCTCCACCTGGCTTGCTCGGTACAC------------------TCCTGCATTTCACA
CCATCTTCTTCATGCTCGTGACTGCAATGGCCGGG--------------------ACAGCAAAATGCTCCTACCAA----
-----------------ACTCATGCTCAGTGCCTCTCAACACTGAACTAGTACTCTGTTTGGC-----------------
----GACGTGTCACTCAAGATCTGCTCTGAATTTCCAAAATCCAAAATCCTTGGACAGGCCAAGCAGGACACCATCGACA
AGGTCTGCGGGATCGTCAAGAAGCAGCTGGCCGTCGCCGAGGGCACCGTCGTCAGCGGAGAGACCAAGTTCGCCGACCTC
GGGGCCGATTCGCTCGACACGGTAATTCCCTC---CCCCCGCCCGACTCACCGGTGATTGCTCAACATGGATGGAGCTAC
AACCTCATCAGCCTACTCTAGAAAAGTTGGAAACAACACCATAAATACATCTTAGCTTCAGTGAATTCGATCCGACTTTT
TT---ACAGTCTTGTGTACTCTTCCAAAATATACAACCAATTTCACATGTTATCCTCGTGCGTGATTATTCCATAATATA
GAACCATTTTCTGCATTCTTCATAACATTCTT----CATA--ATATAGAACCATTTTCTGCATTCCATAATATAGAAC--
--------------------------CAAACAATGTTGCAGGTTGAGATCGTGATGGGTCTGGAGGAGGCATTCAGCATC
ACGGTGGACGAATCGAGCGCCCAGGAGATCAGGACCGTGGAGGACGCCGCGTCTCTCATCGACAAGCTCGTGACAGACAA
GGATTCTTAGAACGACG-------------GCCTCCGTGCCCCTGCCTGAATAGCTTTTTGGGTGCTCTCCTTGTTGTTG
TTGTTGTACTCTAAATACATATATCAAATGATGAACTGGCTGAAACTAGTTAGCCAGGAAGAGGGTCTCTATGCAGAGGT
TGTTTTTGTGTATGCTATGCTATCCCAGATTGAATAAGTAAATGAGGGGGGTAGCACTTCTTCCCTGAGGCAAAGATTGC
TGTTATATGTGTCCCCATTGTGTCACTCGACACTGCTGAGATGTTTACTCTAAGAGAGATAAGAAAATAGAATGCTGAGA
TGTTTACTCCAAGATAAGAAAATAGAATGCTGAGATGTGTCTTGGGAATTACTCCTACAAATTAGAATGCCGAGATTAGA
TTGCCCTTCTAAATTCCACTAGAATTTCCCCTTTCACGACGGTCATGAATTTACATACATGCTGGGGGTTCCAAAAAAAG
TGCTTAGATGATGGCGTGTTAGTCACGACTCATGTGATCATATAAGATATCATGACCAAGCTTAAGAACATGAACCA---
-TCACGGTACAGCTAAACTGATGATAGAATTTTGTACTGGCAATGCCACCCAGATCCATGCTACTGTGAGGATATTTCAG
TGACTTGGTAATCACTGAAATTTGATCCTGGCAGCAAAAGAAAATGGTATTTAGGACAGGTACCTCTGGTACGACGGTCG
TCGCAACCTGGGACTAGAAACAGAGGATTTCTAAATTCCACTAGA---ATTTTCCCTTTCACGACGGTTGCGAATTAACA
TACATACTGGGAATCTAAAACAGTAGCTTAGATGATAGCATGTTCATCGCAACTTCTGTGGCACACCATCGTATCAAATA
CCATATCATGACCAAAGCTTCAGAACATGAACCATGAGCCGTGGTACAGCTAAACTGATGTTAGAATTTTCTACTGGCAA
TGCCTTGAGGA-CCCAGACCCATGCTACTCAGAGGATATTTCGGTTTTCAAGAAGAAGCTCCTCGCCATCT
>chr5B_1
TTTGTGCCTTTCTAGCCTCAACAACCGCCTTAGTAGTTGTTGCAGGCATCAAATATAGTACCGCAGGCCCCTCAAGTACT
TTTGCATCAAGAGCCATCGGCCGGGAGTCCTCAAGTAAGAAAGAAAGATCTAGGTATCGGACATAGCAATAGCTTGACTA
TGGTCTTCAATAGTGTTATAGTGATGTCCTAGAATTGAACAAAAACAATTCATCTACGGTGCTAGCATGCTACAGATGGA
CTGATCACCAAGCTCAACACACAAGCATACGTAGCAAGCTATCATGGACGGATCATGAAGT---TCAACTAACTACCACA
TCTACCATACGGCACATGGACCGACCATCAAGGTCAACATAGTACCACATCTGCCATAGTAGCATTGGAACCGACATGGA
AAACAATTAAATCTACCACAAGAACATGACCATCATCACCGCTGAAACGGAAAAGTCTATCGTACCACCAAAACAGTACC
ACTAACATCTGATCTACGACATCCTCACACAACATCATGAAGCAATACTTACATAAACTGCCATACTACCTGCAGACCTA
CTTC----TACCACATGCTGACATATCTAAGCTCCAAGGTG--GGGAGTGATTGAACTTACAATCATCGAAGGAGCAGGG
AGGAGGAAGGGCGAACAACTCGGAAAAGAGAAGGAAAAAGGATCGCAGCCGCCGGCGGCCGGAGGAGATGGCGCCACTTA
CCTGCTCGTCTGCTAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCGGTGAGTCGAAGGGGTCTAAATAGGGCGAGGCAATCGGCGGGAGGTGGCCCAATTACTCCATGGAAAAAAAATCTAGG
ACACACACATCTCATTGCTTGCATGAGCTCGGCGCTGCATACCCCCCTCCTTGCACGATGAGAGTCTTGCTGAGCGAAAA
CTGTTGATTTGACCGTTCCTGGCGGCTATTGCTAATTAAGTGATGCTTTTAAGAAGCGTGCTATATATGCAGGCCTAACA
ATGCTCGCATACCATCAAACGGTATAAAATTACGTCCGGGATGCGGGCAACCAAACACGCCCCAGAATGAAGAGTACACG
AGCACATACATGGTGAACCACACGTATGTACACACATTCATTCGGCGGCCGGCCGCCAAGCGTGTGTGCGGGAGGTCATG
AAGAAGAAGAA---------TCCAAGGGTGG--------------------TGCGTGCTACGGCGTTGTTTGGTAATCGC
AAGAAGGGACGGGACGGAC---------------AACGGTGATCCCTAGGCCAGCCCAGCCCAGGCCAGGCCGGTGTGTG
TGGGTCGATACAACCGAGGCGGCCTCGCCGTCC------------C----CGCCACCGCCCCATCATAAAACACACGCGC
ACCCGCAGCTCGCGG---CTCATTCCTCCCGTCACCTAGCTATAGCCTAGCTCCCACCTCCATCGTGCCGTGCCTCAGCT
AGCTCATTCAGCCGCCATGTCCGCCCTCTTCGCCGCCGCCGGATCGGCCGTCCTCCCCGCGCATCGGCTCCAGGTAAGCA
GCAGCAGCGGCAGCCGCCGGAGCGCGGCCGTCACGGCGTGCTTCTCCAGGCAGCAGAGCTTCCCGTCGATCTCGATCCGG
TCGGCTCCGGC---GAAGCGCTTCCTCCACCTGGCTTGCTCGGTATACACTCAC----ACACACACTCCTGCATTCTTCT
TCCA--TCTCCATGCTCATGACTGCCTGCACTAGCTAGCGCACGGGCAGCACCCCGCAGCAAAATGCTCCAAGGAGTATC
CATCTCCCACCAAGTTCATTCATTCTGAATGCT--------CTCAACTAGTAGTGCTTTGTC---------------TGA
TGATGATGTGTCACTGAAGATCCGCTCTGAGTT-------TCCAAAATCCTTGGACAGGCCAAGCAGGACACCATTGACA
AGGTGTGCGGGATCGTCAAGAAGCAGCTGGCCGTCGCCGAGGACACCGTCGTAAGCGGGGAGACCAAGTTCGCCGACCTC
GGCGCCGATTCGCTCGACACGGTAACTAAATCCCTCCCCT---CGACTAACCGGTGAC------------ATGGAGCTAC
AACTTCATCAGCCTACTCTAGAAAAGCTGGAAACAACACCATA----CATGTTAGCTTCAGTGAATTCGATCTGACCTTT
TTTTTACAGCCTTGTGTCTTCTTCCAAAATATAAAACCAATT-CATATGTTATTCTTGCGTGTTATTATTCCATAATGTA
GAACCAATTATGAATTGCTATTCTTGTGTATTATTCCATA--ATATAGAACCATTTTCATTTGTTATTCGGTA---TTCT
TCATAACATAGTGCTGGATCCTGTTGCAAACAATGTTGCAGGTTGAGATCGTGATGGGCCTGGAGGAGGCATTCAGCATC
ACGGTGGACGAATCGAGCGCCCAGGAGATCAGGACGGTGGAGGACGCCGCGTCTCTCATCGACAAGCTCGTGACAGACAA
GGATTCTTAGAACGACGACGGCACGGATCCGCCTCCATGTCCCTGCCTGAATAGCTTTTTGGGTGCTCACC---TTGTTG
TTGTTGTACTCTAAATACAGATATGAAATGTTGTACTGGCTGAAACTAGTTAGCCAGGAAGAGGGT-TCCATGCAGAGCT
TGTTTTTGTGTATGCTATGCTATCCCAGATTGAA----TAAATGAGGGGGGTAGCACTTCTTCCCTGAGGCAAAGATTAC
TGTTATATGTGCTCTATTGGTGTCACTAAACACTGCTGGGATGTTTACTCTAAGA----TAAC-AAATTGAATGCTGAGA
T---------------------------------------------------------------------------TAGA
TTGCCCTTCTAAATTCCACTAGAATTTCCCCTTTCACGACGGTCATGAATTTACATTCATGCTGGGGGTTCCAAAACAGA
-GCTTTGATAATGGCGTGTTCGTCGCGACTCATGTGATCATATCACATATCATGACCAAGCTTCAGAACATGAACCA---
-TCGTGGTACAGCTAAACTGATGTTAGAATTTTCTACTGACAATGCCACCCAAACCCATGCTACTGT--------TTCAG
TGACTTGGTAATCACTGAAAATTGATCCTGGCAGCCAAAGAAAATGGTATTTAGGACAGGTACGTCGGGTACGACGGCCG
TCGCAACCTGGGACTAGAAACAGAGGATTTCTAAATTCCACTAGTAGCATTTTCCCTTTCATGACGGTTGCGAATTAACA
TACATACTGGGAATCCAAAACAATATCTTAGATGATAGTGTGTTCATCGCAACTCGTCTGCCACACCATCAAATCAGATA
CCATATCATGACCAGAGCTTCAGAACATGAACCATGAGCCGTGGTACA-----------GTTAGAATTTTCTACTGGCAA
TGCCTTGAGGAA-CCAGACCCATGCTACTCAGAGGATATTTCGGTTTTCATGAAGAAGCTCCTCGCCATCT
>chr5D_1
TTTGTGGCTTTCTAGCCTTAATGGCCGGCTTAGTAGTTGTTGCAAGCATCAAATATAGTACCGCATGACTCTCAAGCACT
TTTGCATCAAGAGCCATCGGTTGGGAGTCCTCAAATAAGAGAGAAAGATCTAGGTGTCGGACATAACTATAGCTTGATTA
TGGTCTTTAG--------TAGTGATGTCATAGAGTTGAACAAAAACAATGCATCTATCGTGATAGCATACTACACATGGA
CTGATCACCAAGCTCAACACACAAGCATACGTAGCAGGCTATCATGGACCGGTCATGAAGT---TCAACACACTACCACA
TCTACCATCTGACACATGGACCGATCATCAAGCTCAGCATAGTACCACATCTGCCATAGTAGCACTGGAGCCGACATGGA
AAACAATTAAATCTACCACAACAACATGAACATCATCACCGCCGTAAAGG-AAAGTCTACCGTACAACCAAAACATTACC
ACTAACATTTGATCTACGACATCCTCACACAACATCATGAAGCAATACTTGCATAACCTGCCATACTACCTACGAATCTA
CCCC----TACCACATGCCCACATATCTGAGCTACAACGTGTAGGGAGTGATTGAACTTACAACCATCGGAGGAGCAGGG
A-------------------------------------------------------------------------------
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>chr5D_670
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------------------------------------------------------------CGTGCGTGCGGGAAGTCATG
AAGGAGGAGAAGAAGCCGCCTCCAAGGGTGGGGTGGGGTGAGGTGGACTGCTGCGTGCTACGGCGTTGTTTGGTAATCGC
AAGAAGGAACG-------------GTGGCGCTGGAACGGTGATCCCTAGGCTACGCCAGCCCAGGCCGGTC---TGTGTG
TGGGTCGATACAACCGAGGCGGCCTCGCCGTCC------------CCGCCCGCCACCGCCCCATCATAAAACACACGCGC
ACCCGCACTCCCGGCCTCCTCATTCCTCCCTGCCTGCTCCTGTGGTCCATTCAGCC------------------------
----------GCCGCCATGTCCGCCCCCGTCGCCACCGCCGGATCGGCCGTCTTCCCCGCGCATCGGCTCCAGGTAAGCA
C---CAGCGGCAGCCGCCGGAGCGCGGC---------GTGCTTCTTGAGGCGGCAGAGCTTCCCGTCCATCTCGATCCGG
TCGGCTCCAACGAAGAAGCGCTTCCTCCACCTGCCTTGCTCGGTACACACACACACACACACACACTCCTGCATTCTTCT
TCCA--TCTCCATGCTCATGACCGCCTGCA----CTAGCGCACGGGCAGCACCCCACAGCAAAATGCTCCCACCAA----
-----------------ATCCATGCTGAATGCT--------CTCAACTAGCACTACTTTGTCTGATGGTGACGATGATGA
TGATCATGTGTCACTCAAGATCCGCTCTGAATC-------TCCAAAATCCTTGGACAGGCCAAGCAGGACACCGTCGACA
AGGTCTGCGGGATCGTCAAGAAGCAGCTGGCCGTCGCCGAGGACACCGTCGTGAGCGGGGAGACCAAGTTCGCGGACCTC
GGCGCCGATTCGCTCGACACGGTAACGAATTCCCTCCCTCTCCTCACTAACCAGTGATTGCTCAACATGGA---------
------------------------------------------------------GCTACAACAACATCGATCTGACCTTT
TTTTTACAGTCTTGTGTCTTCTTCCAAAATATAAAACCAATTCCATATGTTATTCTTGTGTATTGTTCCATAGT-ATATA
AAACCAATTCCATA-TGTTATTCTTGTGTATTGTTCCATAGTATATAAAACCAATTCCATATGTTATTCTTCCGTCTTCT
TCATAACATGGTGCTGGATCCTATTGCAAACAATGTTGCAGGTTGAAATCGTGATGGGTCTGGAGGAGGCATTCAGCATC
ACGGTGGACGAATCGAGCGCCCAGGAGATCAGGACCGTGGAGGACGCCGCGTCTCTCATCGACAAGCTCGTCACAGACAA
GGATTCTTAGAACAA-----------ATCCGCCTCCATGCCCCTGCCTGAATAGCTTTTTGGGTGCTCGCC---TTGTTG
TTGTTGTACTCTAAATACAGATATGGAATGATGTACTGGCTGAAACTAGCTAGCCAGGAAGAGGCT-TCTATGCAGAGCT
TGTTTTTGTGTATGCTATGCTATCCCATATTGAA----TAAATGAGGGGGGTAGCACTTCTTCCCCGAGGCAAAGATTGC
TGTTATGTATCCTATCA--GTGTCACTCAGCACTGCTGAGATGTTTACTCTAACA----TAAGAAAATACTCCCTCCGTT
CCAAATTACTCGTCGTGACACACT--------------------------------------------------------
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------------------------------------ATCATATCAGATATCATGACCAAGCTTCCGAACATGAAGCATGA
GTCACGGTACAGCTAAAGTGATGTTAGAATTTTCTACTGGCAATGCCACCCAGACCCATGCTACTGTGAGGATATTTCAG
TGACTTGGTAATCACTCAAATTTGATCCTGTCAGCCAAAGAAAATGGTATTTAGGACAGGTGCGTCGGGTACGACGGTCA
TCGCGACCTGGGACTAGAAACAGAGGATTTCTAAATTCCACTAGA---ATTTTCCCTTTCACGACGGTTGCGAATTAACA
TACATACTGGGAATCTAAAACAGTAGCTTAGATGATAGCGTGTTCATCGCAACTTCTGTGGCACACCATCGTATCAAATA
CCATATCATGACCAAAGCTTCAGAACATGAACCATGAGCCGTGGTACAGCTAAACTGATGTTAGAATTTTCTACTGGCAA
TGCCTTGAGGACCCCAGACCCATGTTACTCAGAGGAAATTTCGGTTTTCATGAAGAAGCTCCTCGCCATCT
>SNPs
------------S-------------------------------------------------S----S------------
-----------------------------S--------------------------------------S-----------
-------------------------------------------------------S--SS--------------S-----
---S-------------------------S---------S---------------------SSS----------------
-S----S-------------------S------------S------------S--------------S------------
S----S------------S-----SSS-----------S------------S---------S-S-S--------S-S---
S-S-S------S----SS---S-----S-------------------------------S----S-S-------------
---SSSSS---------------S--S--S-S------------S------S-------S-----S--S-----------
------S----S---------SSSS--SSS-SS-SSSSS-SS-SSSS--SSS----------------------------
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---------S-------S--SSSSSS--SS-S---SS---------------S--SS-------S---------------
--S----------------SSSSS------S---------------S-S----S-S-S-SS-S-----------------
--------------------S------------SSSSSSSSSSSS-----------------------------------
----------------------------------------SSS-S----S-----------S-------SS-S--SS---
-S--------S----------------------------------------------------S----------------
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--------S--S---------------------------------------------------------------SSS-S
S-SSSS---S-------S-------SSSSS-SS-S-----------------------------------S---------
------------------S-------S-S---SSSSSSSSS--S----------SSS--SSSS-----------------
------S---------------S----------SSSSSSS----------------------------------------
------------------------------------------S---------S-----S---------------------
--S----------------------S-SSS----------S-------S-------------------------------
---S----------------------S----------------SSSS---S---------------------S---S---
-----------------SS--------------S--------S--S-------S--S---S--S----------------
------S--S-SSSS-S--SSSSSSSSS-S----------------------------SSSSS-SSS-SS-SSSSSSS--
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------------------------------------S-------------------------------S--SSS------
-------------------S----S--------S--------------------------------S-----------S-
----------------------------------SSSS------------------------------------------
-----------SS-S---S---------S--------------------------SSSS---------------------
-SSSSSSS-SSSSSSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----
--------------------------------------------------------S-------------------S-SS
S----S---S----------S---S------------------S-------------------S----------------
-----------------------S---------S--------------------S-------------------------
-----------------------------------S---------------------------S--S-------------
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---------------------------------------S----------------------------------------
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--------------------------------------------------S--------------------
>forward_1574
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----------------------------------AACGGTGATCCCAATGCCAT--------------------------
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>reverse_3052
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-----------TCCCCATTGTGTCACTCGAC-------------------------------------------------
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