CLUSTAL X (1.81) multiple sequence alignment input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GGTTCAGTGATAACAGAAATCAAACTTCGCTCTTTAGATTTTACTTGTAG chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 TAGAATTCAATA-------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TTTCGTTTTTGAAAGCCATTCTTCAAACGGCGAAGCTCATAGTTTAGCTA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AGCATGCACACTCTCTCGGTGCGGGGCGCCACACTTGGCTGGTTAACCCT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TATAATCCGATTTGTATCCCACTTCATGTGGATTATGATCAATAAAGCTT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AGCTTTGCCCTAAAAAAAGTAGTTTCACTACATAAACTTCGTTGCACAAT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 ACACCGTGAGGCCCAACTAAGCTTGATAATGTCTGACCCATAAAGCCCAC chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GAGGTCGGTCATGGCTGAATAGCCCACAAATATACGAAATCACTAATTAA chrUn_337 ------------------------------------AAATCACTAATTAA chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GGAGTACTCTTTGCAAAGATCACTTCCACCTCCTCAAGTTGCGATAGGTG chrUn_337 GGAGTACTCATTGCAAAGAACACT-CCACTTTCCCAGGTCACGACAAGTG chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------S---------S----S----S-S-S--S--SS---S-S--- forward_395 -------------------------CCACCTCCTCAAGTTGCGAT----- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GCGCACTGCATGTGCCTCATTTGTCGTAACCTGGGAGTTTTTCTTTTTTT chrUn_337 GCGCACATGCAGCGCGCCACTTGTCGCAACCTGGGAGTTTTTCCTTTTTT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------SSSSS-S--SS--S------S----------------S------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 CGTACATCCGTTTATTCAAAACGTTTTATCTCTTAAACCATGCGTCCAAA chrUn_337 CGTAGATCCGTTTATTCAAAACGTTTTATCTCTTAAACCGTGCGTCCAAA chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S----------------------------------S---------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TCTTGAACTGTTTTCATCATTGGATTCCTCGCGTCGA-ATTTTCAAAACT chrUn_337 TCTCGAACCGTTTTCACCATTGGATTCCTCGCGTCGAGATCTTCAAAACT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S----S-------S-----------------------S--------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AGATCCCATGTTGATATGTTTTGACGAATCATTTTTTTCACAAAAAAATG chrUn_337 AGATCCCATGTTGATAGGTTTTGACGAACTTCTTTTTTCACGAAAAAACC chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------S-----------SSSS---------S------SS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GA-CGAAAAAACCGAACCGGAAGCACA--TTTTTTCCTTTTTGAAAGAGG chrUn_337 GAGCGAAAAAACCGAACCGGAAGCACAGTTTTTTTCCTTTCCGAAAGAGG chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------------------------------SS-------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 CACAGTCCAAGTAATTATAGGATAAACAGCCCAGCCCAAGTAGAATCTGC chrUn_337 CACGCCCGTGCCTCTCGCGAAATCACAACCGTGCCTCTCGTGGAAACAAA chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---SSS-SSSSSSS-SSSSSS--S-SS-S-SSSS-S-SS--S---S-SSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GACACCC------------------------------------------- chrUn_337 ACCGTGACTCACGTGGAAGGAAAAAAAACAGAAAACGCGTTTTTTTTCCG chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SS-SSSS------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 TTTCCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCCCTC chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 --------------------------TAAAAAAAGAAGCAGCAAAATGGG chrUn_337 GCGAAAGCAAAACTGTGACTCTCGCGTAAGAAAAAAAACAGAAAACGCG- chr7B_717 ---------------------------------------AGCAAAATGTG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------------------------S----S--S------------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TTGGATCGATCAATCACGCG-GCACGCATGGCATCATCTTCTTTTCCCCA chrUn_337 -------------------------------------------------- chr7B_717 TTGGATCGGTCAATCACGCACGCACGCATGGCATCCTCTTCTTTTCCCCT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --------S----------S---------------S-------------S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GGGTCCGGCTACCGTACTTTACTTGCATCCTTTGTAATCCATCGTCTTCA chrUn_337 -------------------------------------------------- chr7B_717 GGATCTGGCTACCCAACTTTACTTTCATCATTTGTAATCCATCGTCGAAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S--S-------SS---------S----S----------------SSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 ACTAGACCTGCACTAGTCGTCCAAGCAAGGAATCAATGCCAGCCAGGCCC chrUn_337 -------------------------------------------------- chr7B_717 CAT-------------------------GGAATCAATGCCAGCCAGGCCC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SS-SSSSSSSSSSSSSSSSSSSSSSSSS---------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------CTGCACTAGTCGTCCAAGCA----------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 ATACTATAAATTGAGAGATATGAACTATAT-----GGCAGCACAAGAAGC chrUn_337 -------------------------------------------------- chr7B_717 ATACTATAAATTGAGAGATATAAACTATATGACCAGGCAGCAAAAGAAGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------S--------------------S------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AATTGGTCTCCCATCCGTAGGTCTTTCTTGACCAATCTCTCTTCATCCAG chrUn_337 -------------------------------------------------- chr7B_717 AATTCT---------------------TTAACCAATCGCTCTTCATCCAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----SSSSSSSSSSSSSSSSSSSSSSS--S-------S------------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 --TTGGTCTCCCATCCGTAGGT---------------------------- reverse_3641 -------------------------------------------------- forward_1115 ---------------------------------------------TCCAG reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -----------------------------ATGGCGGAGGCGGTGATGGGG chr2B_1_TraesCS2B01G011600 CACAAGGGAGAGAGAGAGAGGGGTCGATCATGGCGGAGGCGGTGATGGGG chrUn_337 -------------------------------------------------- chr7B_717 CACAAGAGAGAGA--------GGTCGATCATGGCGGAGGCGGTGATGGGG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S------SSSSSSSS----------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 CACAAGGGAGAGAGA----------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CCGCTGCTGGGGGCACTGCAGGAGCTGGTGATGAAGGAGGCGCAGGCGAT chr2B_1_TraesCS2B01G011600 CCGCTGCTGGGGGCACTGCAGGAGCTGGTGATGAAGGAGGCGCAGGCGAT chrUn_337 -------------------------------------------------- chr7B_717 CCGCTGCTGGGGGCGCTGCAGGAGCTGGTGATGAAGGAGGCGCAAGCGAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --------------S-----------------------------S----- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GAAGGCGGTGGACGACGACGTGCGGAACCTCCGGGACAAGCTCATGTGGC chr2B_1_TraesCS2B01G011600 GAAGGCGGTGGACGACGACGTGCGGAACCTCCGGGACAAGCTCATGTGGC chrUn_337 -------------------------------------------------- chr7B_717 GGCGGCGGTGGACGACGACGTGCGGAACCTCCGGGACAAGCTCATGTGGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -SS----------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TGCAGGCCTTCCTCCGCGACGCCGAGCCACGGCGCCGCGCCAGGAACGAT chr2B_1_TraesCS2B01G011600 TGCAGGCCTTCCTCCGCGACGCCGAGCCACGGCGCCGCGCCAGGAACGAT chrUn_337 -------------------------------------------------- chr7B_717 TGCAGGCCTTCCTCCGCGATGCCGAGCCCCGGCGGCGCGCCAGGAACGAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------S--------S-----S--------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GAGCTCACCAGGGTCTGCCTCCACCAGGTCCGCGGCGCCGTCTTCGACGC chr2B_1_TraesCS2B01G011600 GAGCTCACCAGGGTCTGCCTCCACCAGGTCCGCGGCGCCGTCTTCGACGC chrUn_337 -------------------------------------------------- chr7B_717 GAGCTCACCAGGGTCTGCCTCCACCAGATACGTGGCGCCGTCTTTGACGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------------S-S--S-----------S----- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CGAGGACGCCGTCGACCGCTACTTCCTCCAGATCGACCTCTCCAAGTAGG chr2B_1_TraesCS2B01G011600 CGAGGACGCCGTCGACCGCTACTTCCTCCAGATCGACCTCTCCAAGTAGG chrUn_337 -------------------------------------------------- chr7B_717 CGAGGACGCAGTTGACCGCTACTTCCTCAAGATCGACCTCTCCAAGTAGG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------S--S---------------S--------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTTCTGATGTCCCTGGTTTTGCTAATTCTTAGCCGCAAGAGATTTTTTCT chr2B_1_TraesCS2B01G011600 TTTCTGATGTCCCTGGTTTTGCTAATTCTTAGCCGCAAGAGATTTTTTCT chrUn_337 -------------------------------------------------- chr7B_717 ATTCTGATGTCCCTGGCTTTGCTAATTTTTAGCCGTCAGAGAGATATTTT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs S---------------S----------S-------SS-----SS-S--S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTCGTATTTCAATCAAACTAGCACGCTAGCGTCGCTAATAGCACCCTATA chr2B_1_TraesCS2B01G011600 TTCGTATTTCAATCAAACTAGCACGCTAGCGTCGCTAATAGCACCCTATA chrUn_337 -------------------------------------------------- chr7B_717 TTATA--------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 --------------------------TAGCGTCGCTAATAGCACCC---- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 --------------------------TAGCGTCGCTAATAGCACCC---- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GCTTTTTAAGAAATGCCTCGCTAAATAAACCAGTGTACAATGTCTCACTA chr2B_1_TraesCS2B01G011600 GCTTTTTAAGAAATGCCTCGCTAAATAAACCAGTGTACAATGTCTCACTA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ATACCACGCTATAACGCGTCATAGCACGTAATATCATATTTTAAGTGCCA chr2B_1_TraesCS2B01G011600 ATACCACGCTATAACGCGTCATAGCACGTAATATCATATTTTAAGTGCCA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGCTATTTTGTTGTAGCACGCTATTTGTTTCATTTTCAATTGATTATACA chr2B_1_TraesCS2B01G011600 AGCTATTTTGTTGTAGCACGCTATTTGTTTCATTTTCAATTGATTATACA chrUn_337 ---------------------TATTTTTTTCACTTTTCGAGAGGCACGGC chr7B_717 ---------------------------------TTTCAATTGTTTATACA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSS-----S-----S---------S------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGTTTACTATTTTAAAATGTAAAATTACTCTATGTTAACAAAGACATTTT chr2B_1_TraesCS2B01G011600 AGTTTACTATTTTAAAATGTAAAATTACTCTATGTTAACAAAGACATTTT chrUn_337 CGTGACTTTCGCGTAACCACAACCGTGCCTCTCGCGGAAGCAAAACCGTG chr7B_717 ACTTTATTATTTTAAAATGTAAAATGGTTCTTAGTTGACAAAGATTTTTT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S-------------------S----SS---S-------SS---- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTATGTCTCTTTCATCATTACATTTTAAAATACTAAAGTTACAAAAACAA chr2B_1_TraesCS2B01G011600 TTATGTCTCTTTCATCATTACATTTTAAAATACTAAAGTTACAAAAACAA chrUn_337 ACTCTCACGAAAGAA----------------------------------- chr7B_717 TTATGTCTCTATAATTATTAAACTATAAAATACTAAGGTTACAAAAAAGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------S-S--S----S-S-S-----------S----------SSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ATATGTGCAATTTTAGTAGTTTAAAATGTGCAGACAGTGAAGTTGTGCAT chr2B_1_TraesCS2B01G011600 ATATGTGCAATTTTAGTAGTTTAAAATGTGCAGACAGTGAAGTTGTGCAT chrUn_337 -------------------------------------------------- chr7B_717 AGAATTTTACTT------GTTTAAAATGCGCAGACAGTGAAGTTGTGCAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -S-SS-SS-S--SSSSSS----------S--------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCTAAAGTACTAAAATTTATACGAAAAATAAATCAACTTAGACATAGAAA chr2B_1_TraesCS2B01G011600 TCTAAAGTACTAAAATTTATACGAAAAATAAATCAACTTAGACATAGAAA chrUn_337 ---AAAAAACAAAAATGAAGAAGAACAAAAACACAAAGGACACAAATCAT chr7B_717 TCTAAAGTACT-AAATTTATACAAAAAATAAATCGACTTAGACACAGAAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --------------------------------------------S----- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAAATCTCAG----------TTCGATATATCCTAT--------------- chr2B_1_TraesCS2B01G011600 AAAATCTCAG----------TTCGATATATCCTAT--------------- chrUn_337 GTGAACAAAACAAAAATCGAGGTATACCGATATTTGTTGAAGAAGAAAGA chr7B_717 AAATCTCAGGCAACTGAGATTTCAATAGATCCCAT--------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S-SS---------------S---S---------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 TGGGATGCCAACCGAGGCATCCCCAAGCTTAGATGCTTGAGTATCCTTTG chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 AAATATTTACTTGGGGTGCCTTGGGCATCCCCAAGCTTGAACTCTTGCCT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 CTCTTTATTCTTCTCATATTGGTAGCTCCTCGACCTTCGGACACTTCATC chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 CACACAAAACTTTAACAAAAACTTGTGAGATCCGTTAGTGTAATAAAGCA chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ---------------------------------------CTTATAACTGT chr2B_1_TraesCS2B01G011600 ---------------------------------------CTTATAACTGT chrUn_337 AATCACTACCTTTAGGTACTGTAATGAACTCATTCTTTATTTATATTGGT chr7B_717 ---------------------------------------TTTATAATGGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------------------------S------SS-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTTGCTGATGCTTAGCCGACCGA-TTTTCCTTAGGGCTTAGTCGATGTGC chr2B_1_TraesCS2B01G011600 TTTGCTGATGCTTAGCCGACCGA-TTTTCCTTAGGGCTTAGTCGATGTGC chrUn_337 GTTAAAACTACTGTATTCCAACTTCTCTATGGTTTATACCCCCCGATACT chr7B_717 TTTGCTAATGCCCAGCTAACCGATTTGTCCTTACGACTTAGTCAATATGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S-----S---SS--------S------S-S-------S--S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AACTTTAAT----------------------------AACTCAAAATGTG chr2B_1_TraesCS2B01G011600 AACTTTAAT----------------------------AACTCAAAATGTG chrUn_337 AGCCATAGATTCATCGAAATAAGCAAACAACACACGCAAAACAGAATTTG chr7B_717 AATTTTAAT----------------------------ACTTCAAAATATG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------------------------S-------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TAACTAGCATCACATTTTGAAGTACTAACATTAGAACAAATGT-AACATT chr2B_1_TraesCS2B01G011600 TAACTAGCATCACATTTTGAAGTACTAACATTAGAACAAATGT-AACATT chrUn_337 TTAAAAACAGAACAGTCTGTAGTAATCTGGAAGTTTGGTAAACTT----- chr7B_717 TAACTAGTATCACATTTTGAAGTACTAAAATTACAAAAGAATACAACTTT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------------------S----S--S-S-SSS----S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGCATTTTAAAATATAAATTTAATAAAATTACAAAATTTTAAAATATTAA chr2B_1_TraesCS2B01G011600 AGCATTTTAAAATATAAATTTAATAAAATTACAAAATTTTAAAATATTAA chrUn_337 ----ATGTAACTCCTAAAATTATGTAAATTTGAAAATTTGAAAAATTTGT chr7B_717 AGTAATTTAAAATCTAAAATTAATAAAATTTAAAAAAATTAAA------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S-S--------S----S-----------SS------------SS--SS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AATTACATAAAAAGAAAATCCGACTGAGGCCTAAAAAAATCTCAGTCGAC chr2B_1_TraesCS2B01G011600 AATTACATAAAAAGAAAATCCGACTGAGGCCTAAAAAAATCTCAGTCGAC chrUn_337 ACAGAAGTAATGTGCAAAAAGTTTCAGACCCATTTGACTCTCCAGTAAAA chr7B_717 --TTTCATAAAATATATATCCGTCTGAGG-CTTAAAAACTCCCAGTCGAC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -S----------S-S-------S---------S-----S--S-------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTAGATATGGACAAAACTATTATATAACTCCAGGAACCAAAGTGACTCCG chr2B_1_TraesCS2B01G011600 TTAGATATGGACAAAACTATTATATAACTCCAGGAACCAAAGTGACTCCG chrUn_337 AATGT--------------------------------------------- chr7B_717 TAAGATATGTCTG----TATTATATAACTCCAGGAACCAAAGTGGCTCCG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -S-------SSSSSSSS---------------------------S----- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 ----------------------------------------AGTGACTCCG reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAATCGCCACTTGGGCATGAGTTCTGT-TTGATTGAACAACACTTATATA chr2B_1_TraesCS2B01G011600 AAATCGCCACTTGGGCATGAGTTCTGT-TTGATTGAACAACACTTATATA chrUn_337 -------------------------------------------------- chr7B_717 AAATCGCCAATTGGTGATGAGCTGCACGTTGATTGAACCGCACATATATA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------S----SS-----S-SSSS-----------SS---S------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 AAATCGCCAC---------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TGATAGGGCTAGTAGAGTTAAATTATCTATACCCCTATATAGTGTGTGAA chr2B_1_TraesCS2B01G011600 TGATAGGGCTAGTAGAGTTAAATTATCTATACCCCTATATAGTGTGTGAA chrUn_337 -------------------------------------------------- chr7B_717 TTATAGGGCTAATAGAGCTAAATTATTTATAC------------------ chr1D_2089 -----------------------TATCTATACCCCTATATAGTGTGCGAA chr5B_2100 -----------------------TATCTATACCCCTATATAGTGTGTGAA chr2D_2100 -----------------------TATCTATACCCCTATATAGTGTGCGAA SNPs -S---------S-----S-------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TAATTTTGAAAGATGGTCATTGGATGAAGCCAATCCGACGGTACAGAGAT chr2B_1_TraesCS2B01G011600 TAATTTTGAAAGATGGTCATTGGATGAAGCCAATCCGACGGTACAGAGAT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 TAACTTTGAAAGATGGTCGTTGGATGAAGCCAATCCGACGGTGCAGAGAT chr5B_2100 TAACTTTGAAAGATGGTCGTTGGATGAAGCCAATCCGACGGTCCAGAGAT chr2D_2100 TAACTTTGAAAGATGGTCGTTGGATGAAGCCAATCCGAAGGTGCAGAGAT SNPs ---S--------------S-----------------------S------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GGCAAATCCGAACACTACTGGCCGTTGGATATCA---------------- chr2B_1_TraesCS2B01G011600 GGCAAATCCGAACACTACTGGCCGTTGGATATCA---------------- chrUn_337 ---AAATTCAAGCACTACAGCCAAAGTTTTTGTTTTTGTTCTGCACATAG chr7B_717 -------------------------------------------------- chr1D_2089 GGCAAATCCGAGCACTACTGGCCGTTGGATATCA---------------- chr5B_2100 GGCAAATCCGAGCACTACTGGCCGTTGGATATCA---------------- chr2D_2100 GGCAAATCCGAGCACTACTGGCTGTTGGATATCA---------------- SNPs -----------S-------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 TAAACAAGCAATCTAATCATCCTAAAACCAAAGCTTGGCACATTATTTTT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 ATAATACAAAGAATATATACAAGGAGATAATTACTTGCAGAGAAACTTCC chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ---------TCTACATTGCACCAGTTT----------------------- chr2B_1_TraesCS2B01G011600 ---------TCTACATTGCACCAGTTT----------------------- chrUn_337 ATGAAAAATTCTACATTGTTTCCGTGAGCATGAACACAAGTGCTCAAGGT chr7B_717 -------------------------------------------------- chr1D_2089 ---------TCTACATTCCACTAGATT----------------------- chr5B_2100 ---------TCTACATTCCACCAGATT----------------------- chr2D_2100 ---------TCTACATTCCACCAGATT----------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 CGACCCTCACTTCTTCAATGCATAACTTTCCAATCACTTACCTTTTTGAA chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 AAACTTTTTAGGCATGAGAGGCAAGTAAATTTTTTTGTATTTTCATTCTT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 TTAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 NNNNNNGTAACATGCTCATGTTACTACTCTATGTTACTACCTCTATAGTG chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 AGAAGTAACATATGTGTAGTAACATGCAACACTTCATTTATTATGCTATA chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 GACTCATCTTGCCTTGATATGTGTGATGTTACAGTAACTAGCTAAGTTAC chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 --------------------------CTGCCACATGTACAATCTAGAATA chr2B_1_TraesCS2B01G011600 --------------------------CTGCCACATGTACAATCTAGAATA chrUn_337 TAGAACTACCTCTCTTCATTAACTCATTGCCACATAGACAAATTTGTTGA chr7B_717 -------------------------------------------------- chr1D_2089 --------------------------TTGCCACATGTACAATCTAGAAGA chr5B_2100 --------------------------TTGCCACATGTACAATCTAGAATA chr2D_2100 --------------------------TTGCCACATGTACAATCTAGAAGG SNPs --------------------------S----------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CTCCATGGTTGAACTTAAGCATAATGCACAAATCTCAAAACACAAGCATT chr2B_1_TraesCS2B01G011600 CTCCATGGTTGAACTTAAGCATAATGCACAAATCTCAAAACACAAGCATT chrUn_337 GTTGGACTTGAAGTTACCG------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 CTCCATGGTTGATCTTAAGCATAATGCACAAACCTCAAAACACAAGCACT chr5B_2100 CTCCATGGTTGAACTTAAGCATAGTGCACAAACCTCAAAACACAAGCACT chr2D_2100 CTCCATGGTTGAACTTAAGCATAATGCACAAACCTCAAAACACAAGCACT SNPs --------------------------------S---------------S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCTCCTTTGTTCTAGAATCTTCCCTATCATAATTGCCCA-TTTT--TTTC chr2B_1_TraesCS2B01G011600 TCTCCTTTGTTCTAGAATCTTCCCTATCATAATTGCCCA-TTTT--TTTC chrUn_337 ------------------------------------CTGAAGT-TACTCC chr7B_717 -------------------------------------------------- chr1D_2089 TCTCCTTTGTTCTAGAATCTTCCGTATCATAATTGCCCAATTTATATTTC chr5B_2100 TCTCCTTTGTTCTAGAATCTTCCGTATCATAATTGCCCAATTTT--TTTC chr2D_2100 TCTCCTTTGTTCTAGAATATTCCGTATCATAATTGCCCGAAGT-TATTTC SNPs -----------------------S-------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TAAATGAATTGCCATTATTTGTTTTT-AGTTTATGCTTTACAACACACAA chr2B_1_TraesCS2B01G011600 TAAATGAATTGCCATTATTTGTTTTT-AGTTTATGCTTTACAACACACAA chrUn_337 CACTGTGGCTAGTCTGAAGTAGTAGCATGTGTGTTCAGCCGAC------- chr7B_717 -------------------------------------------------- chr1D_2089 TAGATGAATTGCCATTATTTGTTTTTTACTTTATGCTTGACAACGCACAA chr5B_2100 TACATGAATTGCCATTATTTGTTTTT-ACTTTATGCTTTACAACACATAA chr2D_2100 TACATGAATTGCCATTATTTGTTTTT-ACTTTATGCTTTACAACGCACAA SNPs --S----------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTCCATGAGTTTTAAAATATATTAACT-TTTTTAT--AAAACTAATTCAT chr2B_1_TraesCS2B01G011600 TTCCATGAGTTTTAAAATATATTAACT-TTTTTAT--AAAACTAATTCAT chrUn_337 -------AATCTTAAAATCACTAATTAAGGAG------------------ chr7B_717 -------------------------------------------------- chr1D_2089 TTCCACGAATCTTAAAATAGATTAGCT-TTTTTTATAAAAACTAATTGAT chr5B_2100 TTCCATGAATCTTAAAATAGATTAGCTTTT-TTTATAAAAACTAAATGAT chr2D_2100 TTCCATGAATCTTAAAATAGATTAGCT-TT-TTTATAGAAACTAATTGAT SNPs --------S-S--------S----S--------SS------------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTTGAATGAGATGAACTATAAGAATTAAACAAACATCTACATCATGCATA chr2B_1_TraesCS2B01G011600 TTTGAATGAGATGAACTATAAGAATTAAACAAACATCTACATCATGCATA chrUn_337 -------------------------------------TACTCATTGCAAA chr7B_717 -------------------------------------------------- chr1D_2089 TTTGAATGAGATGAACTATAAGAATTAAACGAACATCTACATCATGCATA chr5B_2100 TTTGAATGAGATGAACTATAAGAATTAAACAAACATCTACATCATGCATA chr2D_2100 TTTGAATGAGATGAACTATAAGAATTAAACGAACATCTACATCATGCATA SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TATGCCTCAAAACTTACATGCTATAGTGTGGTGTTTATTTATAATTTGGT chr2B_1_TraesCS2B01G011600 TATGCCTCAAAACTTACATGCTATAGTGTGGTGTTTATTTATAATTTGGT chrUn_337 GAACACTCCACTTTCCCAGGTCACGACAA--------------------- chr7B_717 -------------------------------------------------- chr1D_2089 TATGACTCAAAGTTTACATGCTATAATGTGGTATTTATTCATAATTTGGT chr5B_2100 TATGACTCAAAGCTTACATGCTATAATGTGGTATTTATTCATAATTTGGT chr2D_2100 TATGACTCAAAACTTACATGCTATAATGTGGTATTTATTCATAATTTGGT SNPs ----S--------------------S------S------S---------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TAACAAATCTCATGCGTGCAATGCACATGTACCTTATTAGTATATATTAT chr2B_1_TraesCS2B01G011600 TAACAAATCTCATGCGTGCAATGCACATGTACCTTATTAGTATATATTAT chrUn_337 -------------------------------------------------- chr7B_717 -----------------------------------------------TAT chr1D_2089 TGCCAAATCTCATGCGTGCAATGCACGTGTACCTTACTAGTA-------- chr5B_2100 TGCCAAATATCATGCATGCAATGCATGTGTACCTCACTAGTCTAAATGGT chr2D_2100 TGCCAAATCTCATGCGTGCAATGCACATTTACTTTACTAGTCTAAATGGT SNPs -SS---------------------------------S-------S----- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTGTGAACTCTGAAGGTACCCAGGCTGGAGCCAAGCCATCCTCCAATTCT chr2B_1_TraesCS2B01G011600 TTGTGAACTCTGAAGGTACCCAGGCTGGAGCCAAGCCATCCTCCAATTCT chrUn_337 -------------------------------------------------- chr7B_717 TGTTGAACTCCGAAGGTACCCAGGCTGGAGCCAAGCCGTCGTCCAATTCT chr1D_2089 -------------------------------------------------- chr5B_2100 GTTTGTG------------------------------------------- chr2D_2100 GTTTGTG------------------------------------------- SNPs --S-------S--------------------------S--S--------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------ATCCTCCAATTCT forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 ----------------------------------GCCATCCTCCAATTCT reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCGCCGGATTGACCACGCAGGTGCGCGGGCGGAGCGACCTGTCGAGGAGG chr2B_1_TraesCS2B01G011600 TCGCCGGATTGACCACGCAGGTGCGCGGGCGGAGCGACCTGTCGAGGAGG chrUn_337 -------------------------------------------------- chr7B_717 TCATCGGATTGACCACGCAGGTCCGCGTGCGGAGGGACCTTTCAAGGAGA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --SS------------------S----S------S-----S--S-----S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 TCGCCGG------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 ----------------------------------------GTCGAGGAGG forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 TCGC---------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GTCAGATCCATCAACAGGAGGCTCGAGATAATAATCGAGAACAAGGAAAA chr2B_1_TraesCS2B01G011600 GTCAGATCCATCAACAGGAGGCTCGAGATAATAATCGAGAACAAGGAAAA chrUn_337 -------------------------------------------------- chr7B_717 GTCGGATCCATCAACAAGAGGCTCGAGAGAATCATCGAGAACAAGGATAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S------------S-----------S---S--------------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 GTCAGATCCA---------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GTACAAGATCGATGACCAGGATTCCTCGTCCGTCACCACCTGGAGGCCGT chr2B_1_TraesCS2B01G011600 GTACAAGATCGATGACCAGGATTCCTCGTCCGTCACCACCTGGAGGCCGT chrUn_337 -------------------------------------------------- chr7B_717 GTACAAGATCGACAACCAGGATTCCTCATCAGTCACCACATGGAGGCCGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------------SS-------------S--S--------S---------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CCACTGAGATCAGTGCTGCTGTTGAAAATCTGTGAGCTGTCGAATATATG chr2B_1_TraesCS2B01G011600 CCACTGAGATCAGTGCTGCTGTTGAAAATCTGTGAGCTGTCGAATATATG chrUn_337 -------------------------------------------------- chr7B_717 CCACTGACATCAGTGCTGCTATCGAAAATCTGTGAGCTGTCGAATCAATG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------S------------S-S----------------------SS--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CCTT--TTTTTCATTCTAAAACTAGCTTAGTTGGTCCACGCTTTTGCGCA chr2B_1_TraesCS2B01G011600 CCTT--TTTTTCATTCTAAAACTAGCTTAGTTGGTCCACGCTTTTGCGCA chrUn_337 -------------------------------------------------- chr7B_717 TTTTTCTTTTTCATTCTAAAACTAGCG-AGTTGGTCCATGTTTTTCCGCA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SS------------------------SS----------S-S----S---- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 ---------------------------TAGTTGGTCCACGCTTTTGC--- forward_1496 -------------------------------------------------- reverse_3839 --------------------------------------CGCTTTTGCGCA forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ACTAGATTTTATCATTCAGTTTATATTAATATGATCTTTTATTATTTTAC chr2B_1_TraesCS2B01G011600 ACTAGATTTTATCATTCAGTTTATATTAATATGATCTTTTATTATTTTAC chrUn_337 -------------------------------------------------- chr7B_717 ACTAGATTTCATTATTCAATTCACATTAATATGATCTTTTATTATTTTAC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------S--S-----S--S-S-------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 ACTAGATT------------------------------------------ forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTCGTCACCAACTACTATTTAATTCAGTTCGCCACAACAATAGTTTTGAT chr2B_1_TraesCS2B01G011600 TTCGTCACCAACTACTATTTAATTCAGTTCGCCACAACAATAGTTTTGAT chrUn_337 -------------------------------------------------- chr7B_717 TTGTTCACCAACTAGTATTTAATTCAGTTCACCACTATAATAGTTTACA- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --SS----------S---------------S----S-S--------SS-S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GTACTATACTCCCTCAATAAAGAAATATAAGAGCATTTAGATCACTAAAA chr2B_1_TraesCS2B01G011600 GTACTATACTCCCTCAATAAAGAAATATAAGAGCATTTAGATCACTAAAA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------TATATCATTAAAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S----- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TAGTGTTCTAAACGCTCTTATATTTGTTTACAGAGGAAGTCGAAAAATAT chr2B_1_TraesCS2B01G011600 TAGTGTTCTAAACGCTCTTATATTTGTTTACAGAGGAAGTCGAAAAATAT chrUn_337 -------------------------------------------------- chr7B_717 TATG-------------------------------------GAAAAATTT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ATACAAAAATTGATGTCTAACAGCTAAAGATAAAGAGTAATCTCGTGCTA chr2B_1_TraesCS2B01G011600 ATACAAAAATTGATGTCTAACAGCTAAAGATAAAGAGTAATCTCGTGCTA chrUn_337 -------------------------------------------------- chr7B_717 ATTCAAACATTGATGTCTAACAAATAAAGATAAAGTGCAATCTCGAGCTA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S----S--------------SS-----------S-S-------S---- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CTCCATACAAAACAAACAATTTATG--TATGAATTTTCTCTTTAG-TCGC chr2B_1_TraesCS2B01G011600 CTCCATACAAAACAAACAATTTATG--TATGAATTTTCTCTTTAG-TCGC chrUn_337 -------------------------------------------------- chr7B_717 CTTCAAACAAAATAAACAAGTTATGTATATGAATTTTCTCTTTTACTCGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S--S------S------S-----------------------SS----S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ACATATACATCTTTTTACCATTGCTACATTTTCTTTAGAATTTATATTGT chr2B_1_TraesCS2B01G011600 ACATATACATCTTTTTACCATTGCTACATTTTCTTTAGAATTTATATTGT chrUn_337 -------------------------------------------------- chr7B_717 ACATATATATCTTTTTTCCACTGCTATATTTTCTATAGAATTTACATTGG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------S--------S---S-----S-------S---------S----S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TATTTTTAATTTTTAATGACTCCATGTAAATCAAATCT------------ chr2B_1_TraesCS2B01G011600 TATTTTTAATTTTTAATGACTCCATGTAAATCAAATCT------------ chrUn_337 -------------------------------------------------- chr7B_717 TATTATAATTTTCTAATGACTCCATAATTACTTTAAATTTAGATATTTCT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S-S-S---S------------SSSS-SSSS-SS------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 GGATTTTGTATAGAATTTGTACGATAATAAAAATTATTATGAAAATAAAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ------------TACTCTTAACTATCATACAAAATTTATTTCAAATTCGT chr2B_1_TraesCS2B01G011600 ------------TACTCTTAACTATCATACAAAATTTATTTCAAATTCGT chrUn_337 -------------------------------------------------- chr7B_717 TTAAATCAAATATACTCTTAACTATCATACACAATTTATTACAAATTTAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------S--------S------SSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ------------------ATAGAAGTTGTAAGAAAATAAAATTTATTTAT chr2B_1_TraesCS2B01G011600 ------------------ATAGAAGTTGTAAGAAAATAAAATTTATTTAT chrUn_337 -------------------------------------------------- chr7B_717 ATATTTCTGGATTTTTTAATAAAATTTGTACGAAAATAAAAATTATTATC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------S--S-----S----------S-----SSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CTTAAAAATTAGACTTAATTAAACATGTAGTATCATCCTGTCATGCTTG- chr2B_1_TraesCS2B01G011600 CTTAAAAATTAGACTTAATTAAACATGTAGTATCATCCTGTCATGCTTG- chrUn_337 -------------------------------------------------- chr7B_717 TG-AAATATTAGAATTAATTAAATAAGTGCCATCGTCCTGTCAAGCATGA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSS---S------S---------S-S--SSS---S--------S--S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCTAACTAATTAATCGTAGTTGTATTAATTGTTATGTAA-TATGAGTTGC chr2B_1_TraesCS2B01G011600 TCTAACTAATTAATCGTAGTTGTATTAATTGTTATGTAA-TATGAGTTGC chrUn_337 -------------------------------------------------- chr7B_717 TCTAACAAATAAGTCATAGTTTTATTGATTGTTTTTTAAATATGATTTGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S---S-S--S-----S----S------S-S---------S---S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AATATATTCCAATTTTATTATTCT-GAATTTAATAATTAAGTTAGATTTA chr2B_1_TraesCS2B01G011600 AATATATTCCAATTTTATTATTCT-GAATTTAATAATTAAGTTAGATTTA chrUn_337 -------------------------------------------------- chr7B_717 AATACGTTGATATTTCTTTATTCCCGAATTTACTAAATAAAATAGAGTTG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----SS--SSS----SS------S--------S---S---SS----S--S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AACTCGTTACTATATCTAACTAATAAAAATAATGTTTCATATATTTTATT chr2B_1_TraesCS2B01G011600 AACTCGTTACTATATCTAACTAATAAAAATAATGTTTCATATATTTTATT chrUn_337 -------------------------------------------------- chr7B_717 TACAGAA------ATCTAACTAATAAAACATGCTTTT--TATATTTTATT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs S--SSSSSSSSSS---------------SSSSSS---SS----------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CCAAATTTAATACATAAAACAGAGTTGTATTCATTGTCATGTGATAGGAG chr2B_1_TraesCS2B01G011600 CCAAATTTAATACATAAAACAGAGTTGTATTCATTGTCATGTGATAGGAG chrUn_337 -------------------------------------------------- chr7B_717 CCAAATTTAGTATATAAACTAGAGTTCTATTCATTGTCATGTAATAGGAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------S--S-----SS------S---------------S------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTGTAATACATTCCTATTTTATTATTACTAATTTAATGAATAAAATAGAG chr2B_1_TraesCS2B01G011600 TTGTAATACATTCCTATTTTATTATTACTAATTTAATGAATAAAATAGAG chrUn_337 -------------------------------------------------- chr7B_717 TTGTAATACATTTATATTTTATTATTCCGAATTTAATGAATAAAATAGAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------------SS------------S-S--------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTGTACTCCCTCCATTACAAATTATTTGAAGTGTTGGACCTCTTTTCCTC chr2B_1_TraesCS2B01G011600 TTGTACTCCCTCCATTACAAATTATTTGAAGTGTTGGACCTCTTTTCCTC chrUn_337 -------------------------------------------------- chr7B_717 TTGTACTCCTTCCCTTACAAATTATGTGAAGTGTTGGATCTATTTTCCTC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------S---S-----------S------------S--S-------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 --------------------------------------CCTCTTTTCCTC forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CATCCAGGTTTGTATGAATGTTGATGAATCTAGACATATATCCAAAG--- chr2B_1_TraesCS2B01G011600 CATCCAGGTTTGTATGAATGTTGATGAATCTAGACATATATCCAAAG--- chrUn_337 -------------------------------------------------- chr7B_717 CATACAGGCTTATATGAATGTTAATGAATTTAGAGATATATATCCAAAGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S----S--S----------S------S----S------SSSS-S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 CATCCAGGT----------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ---TAGGTACATAGAATCATGCATGAATCTATCCAAAAC----------- chr2B_1_TraesCS2B01G011600 ---TAGGTACATAGAATCATGCATGAATCTATCCAAAAC----------- chrUn_337 -------------------------------------------------- chr7B_717 AGCTAGGTACATAGAATCGTCTATTCAAAATCTCAAAGGGGCAGCCCGGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------------------S-SS--SS-SSSSSS----SS----------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 CCATATAGCTCTCACATGCGTAAGGTCCGATGAAGGGTCCAACCATTTTG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 GGTCTATAGTACGCAGTCTTTCCCTACATTTCTGCAAAAGTTTGTTTTCA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 GGACTCTAACCCGTGACCTCATGGTCACATGGCAATAGCTTTACCGCTGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 --------------------------CTAAAACTTCAAATAATTTGGAAC chr2B_1_TraesCS2B01G011600 --------------------------CTAAAACTTCAAATAATTTGGAAC chrUn_337 -------------------------------------------------- chr7B_717 GCCAGGCCTCCCCTTCTATTCAAAATCTAAAACTTCAAATAATTTGGAAC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TGAGTGAGTATTCTA----------------------------------- chr2B_1_TraesCS2B01G011600 TGAGTGAGTATTCTA----------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 GGAGTGAGTATTCTACATTATCTATACCAATATAAAAAGACTCAAAGGGG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs S------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 CAGATCCAATTAATCTCGGCCATCGAATCATGTCAATTCAACGACCTAGA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 CAATATCGAGCGCTCAAGACGCTTAGCATGCAGTTAATTTCATGCCAAAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 ATACTGCTAATCATATAATAACACGCAAATAATATCATACCTAATATCCG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 CATGCACTTAACATACTTCCAAATTAACGTGCATTGCACGTACACATTGA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -TATCCACGTAATAGAAGTTTTGTTTACTACTATTTTTATTAATCCGAAT chr2B_1_TraesCS2B01G011600 -TATCCACGTAATAGAAGTTTTGTTTACTACTATTTTTATTAATCCGAAT chrUn_337 -------------------------------------------------- chr7B_717 CTAGTCACCTAATAAAAGTTGTGTCTACATTATTATTATTCA-----AAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---SS---S-----S-----S---S---SSSSS-S--SS-S-SSSSS--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTAATAAATTAAACAGAGTTGTACTAATTATCCAACTAACAGAAGTATTT chr2B_1_TraesCS2B01G011600 TTAATAAATTAAACAGAGTTGTACTAATTATCCAACTAACAGAAGTATTT chrUn_337 -------------------------------------------------- chr7B_717 TTAACAAATAAAACAAAGTTGTATTCATTATCCAGCTAAAAAAAGCAATT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S----S-----S-------S-S--------S----S-S---S-S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCTTATATTTTTATTCTGAATTTAATATATAAAGCAGAGTTGCATTCATT chr2B_1_TraesCS2B01G011600 TCTTATATTTTTATTCTGAATTTAATATATAAAGCAGAGTTGCATTCATT chrUn_337 -------------------------------------------------- chr7B_717 TCTTATATTTTTATTCCGAATTTAATATATAAAGCAGAGTTGCATTCAAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------S-------------------------------S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GTCATGTCATAGAAGTTGTAACGTATTTTTATTTTACTATTCCAAACTTA chr2B_1_TraesCS2B01G011600 GTCATGTCATAGAAGTTGTAACGTATTTTTATTTTACTATTCCAAACTTA chrUn_337 -------------------------------------------------- chr7B_717 GTCATGTAATAGAAGTTGTAACATATTT-TATTCTATTATTCCAAACTTA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------S--------------S-----S----S--S------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ATGAATGAAATAGAGTTTTATACTCGGTATCTACCTAATACAAGTTGTAG chr2B_1_TraesCS2B01G011600 ATGAATGAAATAGAGTTTTATACTCGGTATCTACCTAATACAAGTTGTAG chrUn_337 -------------------------------------------------- chr7B_717 ATGAATAAAATAGAGTTTATATATACCCTGGTGTCCACCTAAACTTATTG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S-----------SSSSS-SSSSSSS-SS-S-SSSS--S--S-S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTACTATTATAAATTTTTTATATGGTAGTCTTATAGGTCTTGACTGTTCT chr2B_1_TraesCS2B01G011600 TTACTATTATAAATTTTTTATATGGTAGTCTTATAGGTCTTGACTGTTCT chrUn_337 -------------------------------------------------- chr7B_717 TCATGTAAT----------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTTCTGTCGTTTAATTTGGACTACAGTTTTTCTTCCGTTTTAAATATAAT chr2B_1_TraesCS2B01G011600 TTTCTGTCGTTTAATTTGGACTACAGTTTTTCTTCCGTTTTAAATATAAT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAGAGCAGAAGTAATTTTTAGTATAATATTCTTCCTCCGTTCCTAATTGT chr2B_1_TraesCS2B01G011600 AAGAGCAGAAGTAATTTTTAGTATAATATTCTTCCTCCGTTCCTAATTGT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAGATGTTTTAGATATTTCAATGTGGACTACACACGGAGTTACGCACTGA chr2B_1_TraesCS2B01G011600 AAGATGTTTTAGATATTTCAATGTGGACTACACACGGAGTTACGCACTGA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 ------------------------------CACACGGAGTTACGCACTGA reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AATGAGGCAACATACACAGTAAAACTCGTCTAGAAAATGTGCAGTCAGTA chr2B_1_TraesCS2B01G011600 AATGAGGCAACATACACAGTAAAACTCGTCTAGAAAATGTGCAGTCAGTA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAAAGTTAAAACATCATATATTTAGGAACCCAGGGTGGTAATGGAAAGGC chr2B_1_TraesCS2B01G011600 AAAAGTTAAAACATCATATATTTAGGAACCCAGGGTGGTAATGGAAAGGC chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 ------------------------GGAACCCAGGGTGGTAATGG------ forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 ------------------------GGAACCCAGGGTGGTAATGG------ reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTATCTTGCCCTCTCTTGTTTTTTCTTTTCTTTCAAAAATGTGTATATAG chr2B_1_TraesCS2B01G011600 TTATCTTGCCCTCTCTTGTTTTTTCTTTTCTTTCAAAAATGTGTATATAG chrUn_337 -------------------------------------------------- chr7B_717 ------------------------------------AAATGTGTATATAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAACCCTAATACTTACATGCATGCATGC------AGGGGTCGTTTCATGC chr2B_1_TraesCS2B01G011600 AAACCCTAATACTTACATGCATGCATGC------AGGGGTCGTTTCATGC chrUn_337 -------------------------------------------------- chr7B_717 AAACCCTAATAACACTTAAAAGTTGGACATGCATAGGGGTCGTTTCACGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------SSSSSSSSS-SSSSSS--------------------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TACCATTGGTGGGACGAGACGACATGCAAGAGCAAATAAAAAAGGCGCTC chr2B_1_TraesCS2B01G011600 TACCATTGGTGGGACGAGACGACATGCAAGAGCAAATAAAAAAGGCGCTC chrUn_337 -------------------------------------------------- chr7B_717 TACCATTGGTGGGACGAGACGAGAAGCAAGAGGAAATGAGGAAGGTGCTC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------------S-S-------S----S-SS----S---- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AACGAGGAATCCAAGCACCCCGTGGTGATCACGGTGGCAGGGGAGAGCGG chr2B_1_TraesCS2B01G011600 AACGAGGAATCCAAGCACCCCGTGGTGATCACGGTGGCAGGGGAGAGCGG chrUn_337 -------------------------------------------------- chr7B_717 AACGAGGAATCCAAGCACCCCATGGTGATCACGTTGGCAGGGGAGAGCGG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------S-----------S---------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CGTGGGCAAGACGAAGCTGATGCAGGCGATCTACGAGGGTCCCCTAACCA chr2B_1_TraesCS2B01G011600 CGTGGGCAAGACGAAGCTGATGCAGGCGATCTACGAGGGTCCCCTAACCA chrUn_337 -------------------------------------------------- chr7B_717 CCTGGGCAAGACAAAGTTGACGAAGGCGATCTACGAGGATCCCGTAACCA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -S----------S---S---S-S---------------S----S------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGGAGCATTTCAGGGTGCGCGTGTGGGTGAGCTTCGCGCCGGGCCTCAGC chr2B_1_TraesCS2B01G011600 AGGAGCATTTCAGGGTGCGCGTGTGGGTGAGCTTCGCGCCGGGCCTCAGC chrUn_337 -------------------------------------------------- chr7B_717 AGGAGCATTTCAGGGTGCGCGTGTGGGTGAGCTTCGCGCCAGGCCTCAGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GCCTCCCAGATCCTCAAGCTGGTCCTCCTGCGCATGGCGCTGAAGCCGAG chr2B_1_TraesCS2B01G011600 GCCTCCCAGATCCTCAAGCTGGTCCTCCTGCGCATGGCGCTGAAGCCGAG chrUn_337 -------------------------------------------------- chr7B_717 GCCTCGCAGATCCTCAAGCTGGTCCTCCTGCGCCTGGCGCTGAAACCGAC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----S---------------------------S----------S----S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CAAGAGAAGCTACGACGACGGCGACGACTGTCCCGGCATAAGGCTACGAG chr2B_1_TraesCS2B01G011600 CAAGAGAAGCTACGACGACGGCGACGACTGTCCCGGCATAAGGCTACGAG chrUn_337 -------------------------------------------------- chr7B_717 CAAGAGCAGCTACG---ACGGCGACGATGATCCCGGGGTAAGGCTACAAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S-------SSS----------SSS------SS---------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CGGCGCTGCGAGCCAAGATCTACCTTCTGGTCCTCGACGGCGAGGTCAGC chr2B_1_TraesCS2B01G011600 CGGCGCTGCGAGCCAAGATCTACCTTCTGGTCCTCGACGGCGAGGTCAGC chrUn_337 -------------------------------------------------- chr7B_717 CGGCGCTGCGAGCCAAGATCTACCTGCTGGTCCTCGACGGTGAGGTGAGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------S--------------S-----S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGCACGGAGTGGAACGGCATCCTGTCCTTCCTGGA---GACGAGCAGCTC chr2B_1_TraesCS2B01G011600 AGCACGGAGTGGAACGGCATCCTGTCCTTCCTGGA---GACGAGCAGCTC chrUn_337 -------------------------------------------------- chr7B_717 AGCACGGAGTGGAACGGCATCCTGTCCATCCTCGGGAGGACGAGCAGCGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------------S----S-S-------------S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CAAGAGCAGAGTGGTGAGGATCACGCGGATGGACCCGGCGGCACATTCCT chr2B_1_TraesCS2B01G011600 CAAGAGCAGAGTGGTGAGGATCACGCGGATGGACCCGGCGGCACATTCCT chrUn_337 -------------------------------------------------- chr7B_717 CAAGAGCAGAGTGGTGAGGATCACACGGACGGACCCGGTGGCACAGTCCT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------------------------S----S--------S------S---- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 ------------------------------------------ACATTCCT reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CCAGCTTCGAGCACAGGAATATCGTCCTTACGCACTTGGACAAGGGCAGG chr2B_1_TraesCS2B01G011600 CCAGCTTCGAGCACAGGAATATCGTCCTTACGCACTTGGACAAGGGCAGG chrUn_337 -------------------------------------------------- chr7B_717 CCAACTTCGTGGATAGGAATATCCTCCTTACGCACTTGGACAAGGGCACG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S-----S-S-S---------S------------------------S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 CCAGCTTCGAGC-------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCCATGCAGCTGTTCCACAGGGCGCTCCGCCTGGGCCTGGGCTGGGGGCA chr2B_1_TraesCS2B01G011600 TCCATGCAGCTGTTCCACAGGGCGCTCCGCCTGGGCCTGGGCTGGGGGCA chrUn_337 -------------------------------------------------- chr7B_717 TCCGTGGAGCTGTTCCGCAAGGCGCTCCTCTGGGGCAGGGG--------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S--S---------S--S--------S-SS----SS---SSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TGGCGAGAAGCATAACAGCAGGATCTTGGCCGACGACCCGAAGATGAAGA chr2B_1_TraesCS2B01G011600 TGGCGAGAAGCATAACAGCAGGATCTTGGCCGACGACCCGAAGATGAAGA chrUn_337 -------------------------------------------------- chr7B_717 TGGTGAGAAGTATAACAGGATCTCA---GCCGACGACCTAGAGATGAAGA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S------S-------S-SSSSSSSS----------SSS--------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGCACCTGGATTCCATCCACAGCGTCACCGGCGGTCTCCCGCTGTCGGTC chr2B_1_TraesCS2B01G011600 AGCACCTGGATTCCATCCACAGCGTCACCGGCGGTCTCCCGCTGTCGGTC chrUn_337 -------------------------------------------------- chr7B_717 AGCACCTGGATTCCATCCACGACGTCACCGGCGGTCTCCCGTTGTCTGTC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --------------------SS-------------------S----S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GTGCTGCTGGCGGGCCTCCTGCAGACCAAGGAGTTCCCCGGGGAATGGAT chr2B_1_TraesCS2B01G011600 GTGCTGCTGGCGGGCCTCCTGCAGACCAAGGAGTTCCCCGGGGAATGGAT chrUn_337 -------------------------------------------------- chr7B_717 GTGCTGCTGGCGGGCCTCCTGCAGACCAAGGAGTTCCCCGGGGAATGGAC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCGCGTGTTCGAGCACCTCACGGACAAGTCCGGCAAGTCCAAACGGGGCG chr2B_1_TraesCS2B01G011600 TCGCGTGTTCGAGCACCTCACGGACAAGTCCGGCAAGTCCAAACGGGGCG chrUn_337 -------------------------------------------------- chr7B_717 TCGCGTGTTCGAGCACCTCACGGACAAGTCCGGCAAGTCCAAACGGGACG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------------------------------------------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ACATCATACTCTCCATGTGCTTCGACGACCTCCCGCACGACCTGAAATCG chr2B_1_TraesCS2B01G011600 ACATCATACTCTCCATGTGCTTCGACGACCTCCCGCACGACCTGAAATCG chrUn_337 -------------------------------------------------- chr7B_717 ACATCATACTCTCCATGTGCTTCGACGACCTCCCGCACGACCTGAAATCG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TGCTTCCTCTACCTGGCATGCTTCCC------------------------ chr2B_1_TraesCS2B01G011600 TGCTTCCTCTACCTGGCATGCTTCCC------------------------ chrUn_337 -------------------------------------------------- chr7B_717 TGCTTCCTCTACCTGGCATGCTTCCCAGTGAACATGCTGGTCAAGGCGCG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ---------------------GGTGGAGGGTTTCCTGAGCCCTAGGGGGG chr2B_1_TraesCS2B01G011600 ---------------------GGTGGAGGGTTTCCTGAGCCCTAGGGGGG chrUn_337 -------------------------------------------------- chr7B_717 CACCATGGTGTGCATGTGGATGGCGGAGGGTTTCCTGAGCCCCAGGGGGG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------------------S------------------S------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GCATGACGATGGAGAGGGTGGGCATCCATTTCTTGAACGAACTGGCCCAG chr2B_1_TraesCS2B01G011600 GCATGACGATGGAGAGGGTGGGCATCCATTTCTTGAACGAACTGGCCCAG chrUn_337 -------------------------------------------------- chr7B_717 GCATGACGATGGAGAAGGTGGGCAGCCATTTCCTGAACGAGCTGGCCCAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------S--------S-------S-------S--------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------GAGGGTGGGCATCCATTTCT----------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGGCGCCTCATCAACATCCCGCCGGTGGAGTACGCCGATCCTGGGTTCGA chr2B_1_TraesCS2B01G011600 AGGCGCCTCATCAACATCCCGCCGGTGGAGTACGCCGATCCTGGGTTCGA chrUn_337 -------------------------------------------------- chr7B_717 AGGCACCTCATCAACATCCCGCCCGTGGAGTACGCCGATCCTGGGTTCGA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S------------------S-------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GAGCATCACCGTGCAGTCAAGGGTCCACGACTTCCTTCTGCATGAGGCGC chr2B_1_TraesCS2B01G011600 GAGCATCACCGTGCAGTCAAGGGTCCACGACTTCCTTCTGCATGAGGCGC chrUn_337 -------------------------------------------------- chr7B_717 GAGCGTCACTGTGCAGTCCAGGGTCCACGACTTCCTGCTGCATGAGGCGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S----S--------S-----------------S------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGGAGGCCAGCTTCGTGGAGGTCCACTGCGGCGACGATGTCCCGATGCTG chr2B_1_TraesCS2B01G011600 AGGAGGCCAGCTTCGTGGAGGTCCACTGCGGCGACGATGTCCCGATGCTG chrUn_337 -------------------------------------------------- chr7B_717 A---------------GGAGGTCCACGGCGGCGACGATGTCCCGATGCTA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -SSSSSSSSSSSSSSS----------S----------------------S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ACCACCACTCGCCGCCTCGCGCTGCAGAACCACAGCGATAAGTATGCTGC chr2B_1_TraesCS2B01G011600 ACCACCACTCGCCGCCTCGCGCTGCAGAACCACAGCGATAAGTATGCTGC chrUn_337 -------------------------------------------------- chr7B_717 ACCACCACTCGCCGCCTCGCGCTGCAGAATCACAGCGATAAGTATGCTGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------------------------S-------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CCTCACCACCCCTCTGCCCAAGCTGCGGTCCATCTTCTCCAGCTTTGAAA chr2B_1_TraesCS2B01G011600 CCTCACCACCCCTCTGCCCAAGCTGCGGTCCATCTTCTCCAGCTTTGAAA chrUn_337 -------------------------------------------------- chr7B_717 CCTCGCCACCCCTCTGCCCAAGCTGCGGTCCATCTTCTCAAGCTTTGAAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S----------------------------------S---------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AAGAAGACAC------GGCGACGACGATGGTGGCGGATGCTGCTGCAGGC chr2B_1_TraesCS2B01G011600 AAGAAGACAC------GGCGACGACGATGGTGGCGGATGCTGCTGCAGGC chrUn_337 -------------------------------------------------- chr7B_717 AAGAAGACACGGGGATGGGGACGGCGACGGCGGCGGCTCATGCTGCAGGT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------------------S----S---S--S-----S-SS---------S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GACCGGGACAAGAAGGGTATAAAGACCAGTACTGCTCGGGTCTTCCCTCA chr2B_1_TraesCS2B01G011600 GACCGGGACAAGAAGGGTATAAAGACCAGTACTGCTCGGGTCTTCCCTCA chrUn_337 -------------------------------------------------- chr7B_717 GACCGGAACAAGAAAGGTACAAACACCACCATTGCTCGGGTCTTCCCCCA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------S-------S----S---S----SS-S---------------S-- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TCTTCTTCGGAGCCCCGACAGCGCCTACACGTACCCCAAGGAGATTATAC chr2B_1_TraesCS2B01G011600 TCTTCTTCGGAGCCCCGACAGCGCCTACACGTACCCCAAGGAGATTATAC chrUn_337 -------------------------------------------------- chr7B_717 TCTTCTTCGGAGCCCCGGTAGCGCCTACACGGACCCGAAGACGATCATAC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------------SS------------S----S---SS---S---- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGAGGCTCCTGCGCAATTCCAAGTTCCTCCGTGTCATCAGTCTAGATGGC chr2B_1_TraesCS2B01G011600 AGAGGCTCCTGCGCAATTCCAAGTTCCTCCGTGTCATCAGTCTAGATGGC chrUn_337 -------------------------------------------------- chr7B_717 AGAGGCTCCTGTGCAATTCCAAGTTCCTCCGTGTCATCAGTCTAGATGGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----------S-------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CTCGACATTGGCATCGAGTTACCCCATGAAATCGGGAGCGTGGTGCACCT chr2B_1_TraesCS2B01G011600 CTCGACATTGGCATCGAGTTACCCCATGAAATCGGGAGCGTGGTGCACCT chrUn_337 ---------------------------------------GTGGCGCACAT chr7B_717 CTCGACATTGGCATCGAGTTACCCCATGAAATCGGGAGCGTGGTGCACCT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GCAGCATCTCGCCATCACCTCCTGCTCCCTCAAGGTAATTGAGCTTTTTA chr2B_1_TraesCS2B01G011600 GCAGCATCTCGCCATCACCTCCTGCTCCCTCAAGGTAATTGAGCTTTTTA chrUn_337 GCAGCGCGCCACTTGTCGCAACCTGGG----------------------- chr7B_717 GCAGCATCTCGCCATCACCTCCTGCTCCCTCAAGGTAATTGAGCTGTT-- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---------------------------------------------S--SS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TAAAAAGAAAAAGAATAGTTATTCTTATTTTTGAACATTCGAAATCTATA chr2B_1_TraesCS2B01G011600 TAAAAAGAAAAAGAATAGTTATTCTTATTTTTGAACATTCGAAATCTATA chrUn_337 ----------------AGTTTTTCCTTTTTTCGTAGAT------------ chr7B_717 ------------------------TTCTTTTTCAAAATTTGAAGTCTATA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSS----S-----S--------S---S---S------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTC----------------------------------------------- chr2B_1_TraesCS2B01G011600 TTC----------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 TTAGACTAAAATTAAAATATTCTAAAATACTAACCTCATGGATTGTCAAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S----------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 AGCCGACAGGGGCATAGTGTCGGCATTTAAAAAGCCAACTCGAATGCATG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 -------------------------------------------------- chrUn_337 -------------------------------------------------- chr7B_717 TTGACTTTTGAGTAGCCGACTGGATCTAGTCACGTTTTTTTAGTTTAGAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------------------------------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 --------------------------------------TCGACTGAAAAA chr2B_1_TraesCS2B01G011600 --------------------------------------TCGACTGAAAAA chrUn_337 -------------------------------------------------- chr7B_717 AAAATCGAAAAGAGTGCAATTTCTTGTTTAAAAAACATTCGAATGAAAAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ------------------------------------------S------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 CTCTTGTCCAGGTAATACCACCGTCAATTGGGAAGCTGACCCGACTGCAG chr2B_1_TraesCS2B01G011600 CTCTTGTCCAGGTAATACCACCGTCAATTGGGAAGCTGACCCGACTGCAG chrUn_337 -------------------------------------------------- chr7B_717 CTATTGTCCAGGTAATACCACCGTCAATTGGAAAGCTGACCCGGCTCCAG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S----------------------------S-----------S--S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ACGCTGGATGTCCGAGGCACCGGCGTCAACGCGCTCCCCACGGGGTTCTG chr2B_1_TraesCS2B01G011600 ACGCTGGATGTCCGAGGCACCGGCGTCAACGCGCTCCCCACGGGGTTCTG chrUn_337 -------------------------------------------------- chr7B_717 ACGCTGGACGTCCGAGGCACCGGCGTCAACGCGCTCCCGATGGGGTTCTG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --------S-----------------------------S-S--------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GAAGATACAAACGTTGCGGCACGTGTTCGGGTCCATCGTCTTGCCCAGGC chr2B_1_TraesCS2B01G011600 GAAGATACAAACGTTGCGGCACGTGTTCGGGTCCATCGTCTTGCCCAGGC chrUn_337 -------------------------------------------------- chr7B_717 GAAAATAAGGACGTTGCGGCACGTGTTCGGGTCCATCCTCTTGCCCAGGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ---S---SSS---------------------------S------------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 GAGTTGGCCACCTGGAGCAGCTGCGGAATCTGACGACCGTAAACCAGGGC chr2B_1_TraesCS2B01G011600 GAGTTGGCCACCTGGAGCAGCTGCGGAATCTGACGACCGTAAACCAGGGC chrUn_337 -------------------------------------------------- chr7B_717 GAGTCGGCAACCTGGAGCAGCTACGGAACCTGACGACTGTAAACCATGGC chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----S---S-------------S-----S--------S--------S--- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------CGTAAACCAGGGC forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AACAACGGTGTCTGGGACAAGAAAACCTTCCACAGGATGGTACGCCTCAA chr2B_1_TraesCS2B01G011600 AACAACGGTGTCTGGGACAAGAAAACCTTCCACAGGATGGTACGCCTCAA chrUn_337 -------------------------------------------------- chr7B_717 AACAACGGTGCCTGGGACGAGAAAACCTTCTCCAGGATGGTACGCCTCAA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------S-------S-----------SS------------------ forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 AACAACG------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 ------------------------------CACAGGATGGTACGCCTCAA forward_6412 -------------------------------------------------- reverse_7932 -------------------------------ACAGGATGGTACGCCTCAA forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 ---------------------------------AGGATGGTACGCCTCAA reverse_8927 -------------------------------------------------- input_sequence_6638 CACGCTGCACATCGACGGGATCTCCGCCGACAGCGTGGAGGCCATCTACG chr2B_1_TraesCS2B01G011600 CACGCTGCACATCGACGGGATCTCCGCCGACAGCGTGGAGGCCATCTACG chrUn_337 -------------------------------------------------- chr7B_717 CATGCTGCACGTCGACGGGATCTCCGCAAGCAATGTGGAGGCCATCTACA chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs --S-------S----------------SSS--SS---------------S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 C------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 CAC----------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 AGCTCAAGTACCTCGTGATCCTCAACCTCGCTTCCGGCGAGCTGGCGACG chr2B_1_TraesCS2B01G011600 AGCTCAAGTACCTCGTGATCCTCAACCTCGCTTCCGGCGAGCTGGCGACG chrUn_337 -------------------------------------------------- chr7B_717 AGCTCAAGTACCTCGTGATCCTCAACCTCGCTTCTGGAGATCAGGCGGTG chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs ----------------------------------S--S--S-S----SS- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -----------------------------------------------ACG forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ATCCCCTTTGCTCTGTTCACCAGATCCAACCTCCCACGCCTCCAGATGAT chr2B_1_TraesCS2B01G011600 ATCCCCTTTGCTCTGTTCACCAGATCCAACCTCCCACGCCTCCAGATGAT chrUn_337 -------------------------------------------------- chr7B_717 ATCCCCTCAGATCTGTTCACTAGATCCAACCTCCCACGCCTCCAGATGAT chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -------SS-S---------S----------------------------- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 ATCCCCTTTGCTCTGTT--------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 TTTTTTGGAAAAGTGA---------------------------------- chr2B_1_TraesCS2B01G011600 TTTTTTGGAAAAGTGAATATCATTTAAATTTCGACCATTTTTTGAAAAAC chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GTCAACAAGTTATTTAAATTTCAAACTTTTTTGATATCATGACCAATTTT chrUn_337 ------------------------------------------CCGTTTAT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--SS--S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TTAAAACCTGTTTTCTTTTGAAAATTCCAGACATTTTTGAAAACCCGAAT chrUn_337 TCAAAACGTTTTATCTCTTAAACCGTGCGTCCAAATCTCGAACCGTTTTC chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -S-----S-S--S---S--S--SSS-S-SSS--SS-S-SS--S-SSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 ATTTTTTAAATTCTGAACAATTTTCTAAATTCCAAATATATTTTAAATTG chrUn_337 ACCATTGGATTCCTCGCGTC------------------------------ chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -SSS--SS-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 CGAGTATGTTTTGAAATTAGGAGTTTTTTAAAACCTGAACATTTTTTGAA chrUn_337 --------------------GAGATCTTCAAAACTAGATCCCATGTTGA- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSS---S-S--S-----SS--S-SSS-S----S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AAGTAAATATTTTTTAACTTCATTACATTTTGTTTCAGAAAATGTTCATG chrUn_337 -----------------------------TAGGTTTTGACGAACTTCTTT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S-S--SS--SS-SS---S-S forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TTTCAGGAAAAAAATTGACTTTATGAAAAGATCAGGCATTCGGGAAATAT chrUn_337 TTTCACGAAAAAACCGAGCGAAAAAACCGAACCGGAAGCACAGTTTTTTT chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs -----S-------SSSSS-SSS-SS-SSSS-S-S-SSSSS-S-SSSS-S- forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TTCTGGATTTTAAAAAATGTTCATGGAATTGAAAATTATTCCTGTATTTT chrUn_337 CCTTTCCGAAAGAGGCAC-------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSS-SSSSSSSS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AAAATATTTTCACAAATTTTCAAAAAAACTAGTGTTAAATATCTTCATGG chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TTTTGAAAAAAATGTGCACAAATTTTAAAAATGATACAATATTTCAGTAA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AAAAAAATTACAAATTTTAGAAATGTTTCTGGATTTCAAAAAATGTTTAT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 GAATCTGAAAATTATTCCTTTATTTCAAAATTTGTTCACAAATTTTCAAA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AATATATAGTGAAATATCATGATGGTTTTGAATATATTTTTCACAATTTT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TAAAAATATTTTTGTATTTCAGTAAAATGTTCATGGATTTAAAAAATGTG chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TCGGACGTAATATTTCTTTGGAATATTCAAAAAAGTTCTTCAATCTGAAT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AATATTTCGTGGATTCAAAACAACAGTGAAATTAAATATTTGTCCTTATT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 CTGAAAAATATTCCAAATTTCAAAAATGTTCCAAAGAGTTCGGGAAATAT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 --------------------------TGTTCCAAAGAGTTCGGGAAA--- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 TGGTTTTTTGGAAATAAGTCATGGATTTCAGAGAATGATCGTGAAGTTCA chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AAAAGAAGTCATGAATTTGAAAAATGTTTGCAAATTTCGTAAAATATTTC chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 -------------------------------------------------- chr2B_1_TraesCS2B01G011600 AAAATTATAAAAACTATGAATTTGGATCACATTAAAATATGTTTTGAATT chrUn_337 -------------------------------------------------- chr7B_717 -------------------------------------------------- chr1D_2089 -------------------------------------------------- chr5B_2100 -------------------------------------------------- chr2D_2100 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_395 -------------------------------------------------- reverse_1477 -------------------------------------------------- forward_977 -------------------------------------------------- reverse_3588 -------------------------------------------------- forward_1072 -------------------------------------------------- reverse_3641 -------------------------------------------------- forward_1115 -------------------------------------------------- reverse_3828 -------------------------------------------------- forward_1496 -------------------------------------------------- reverse_3839 -------------------------------------------------- forward_2460 -------------------------------------------------- reverse_4739 -------------------------------------------------- forward_3604 -------------------------------------------------- reverse_5825 -------------------------------------------------- forward_5750 -------------------------------------------------- reverse_7888 -------------------------------------------------- forward_5844 -------------------------------------------------- reverse_7931 -------------------------------------------------- forward_6412 -------------------------------------------------- reverse_7932 -------------------------------------------------- forward_6883 -------------------------------------------------- reverse_8048 -------------------------------------------------- forward_7953 -------------------------------------------------- reverse_8927 -------------------------------------------------- input_sequence_6638 ---------------- chr2B_1_TraesCS2B01G011600 TAGGAAAAATCATGAA chrUn_337 ---------------- chr7B_717 ---------------- chr1D_2089 ---------------- chr5B_2100 ---------------- chr2D_2100 ---------------- SNPs SSSSSSSSSSSSSSSS forward_395 ---------------- reverse_1477 ---------------- forward_977 ---------------- reverse_3588 ---------------- forward_1072 ---------------- reverse_3641 ---------------- forward_1115 ---------------- reverse_3828 ---------------- forward_1496 ---------------- reverse_3839 ---------------- forward_2460 ---------------- reverse_4739 ---------------- forward_3604 ---------------- reverse_5825 ---------------- forward_5750 ---------------- reverse_7888 ---------------- forward_5844 ---------------- reverse_7931 ---------------- forward_6412 ---------------- reverse_7932 ---------------- forward_6883 ---------------- reverse_8048 ---------------- forward_7953 ---------------- reverse_8927 ----------------