>input_sequence_66341
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-----------------------ATGGCAAGCCGAGCTCTCGCCCCCTTCCAGCTCGCTGCCATCCTCCTGGTCGCGCTC
TTCGCCACGTGCCATGCCGGCAGCATCGCTGTGTACTGGGGCCAGAACGACGGCGAGGTGTCGCTGGCTAAGACATGCGC
GTCAGGTAACTACAAGTTCGTCGTCGTTGCTTTCCTCCCAAAGTTTGGCAAGGGCCAGAAGCCGGAGCTGAACCTCGCCG
GCCACTGTGACCCTTCATCTGGCGGC---TGCAAAATCCTGAGCAAGGACATCCACTCGTGCCAGTGCCGCGGCGTCAAG
GTCCTCCTCTCCCTCGGGGGCGCGGACGGCAGCTACGGCCTCTCGTCCCGCGGCGATGCACGGCAGGTTGCCATGTATCT
CTGGAACACCTTCCTGGGCGGCACGAGGTCGTCGTCTCGCCCCCTCGGGGACGCTGTGCTCGACGGCATCGACTTCGACA
TCGAGAAAGGCGGCTCCAAGTTCTGGGGTGACCTTGC-------------------------------------------
------------------------------------------------------CAGGGACCTCAAGAACTTGGACAA--
----GGG------------CGTGCTGCTGAGCGCGGCGCCACAGTGCCCTTTCCCTGACCAGT---------GGGACGAT
GGCGCGATCAGGACAGGGCTGTTCGACTTCGTGTGGGTGCAGTTCTACAACAACCCGGAGAGCCAGATCAGCGCAGGCCC
TGGAGCATTCTTGGCCGCGTGGAAGAGGTGGGAGTCATTGCCGATAGGGAAGCTCTTCCTGGGGCTGCCGGCTTCCAAGG
ACGCGGCGGGCACCGGGTTCGTGCCCGCCGGCAAGCTCAAGTCG---GTACTGCCGCTCATCAAGGGCACGCCCAAGTAC
GGCGGCGTCATGCTGTGGGCTAAGTTCTATGACGATCACACTGGATATAGCTCCGCCATCAAGGGCCACGTGTGA-----
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>chr3A_1_TraesCS3A01G372700
TGTTACTACTCTTGTTCTTACGTGATAATCAACTGCAGGAAAGTTTCCAACTTTGGTGTCTCACCAGGAATCCCTTGAGT
CCAAGGTTAATGAGACCAAGGCCACAGTCAAGTTCCAGTTGAAAAAGGTGCTTTGCATGGGTGTTGCCGTTGGCCACCTG
GGTATGGAGGAGAAGCAGATCTTCCAGAACGTGCAGATGAGCGTCAACTTCCTCGTCTCTCTGTTGAAGAAGAACTGGCA
AAACGTATGTTATGTGCCCCCTGCCATACCTGCACAC--TATTTTCATCAACATTTGGCTATTGATTGATGGTTATATGT
TAAAAATAGATTACTGATTGATCTGTAATTTCTTGCAGGTGAGATGCTTGTACCTGAAGAGCACGATGGGGAAGGTGTAC
CGGTTGTTCTAGGCTCTAGTCTTCTAGGATTTCCAGGAGATTGACAACTTGGGAACTTTTGTTGCTTTCTCAATTATCAA
ATTTTCGTGCGCTGAGGAGTGACAATTATTGTCTTGTACTGAGATGCTTTGTTCTATTGTCTGGAACTTGATGACATTTT
ATCCGTTGTCCCTGTGCCTTACTACTGCTCTGCCTGCTGTCA------TCAGCTTAACACTAGATTCAGCATTACTCCTT
CGGTATTTACGACCGTCAGAATCTTATTTTACCGAGTGTGTCGGACGGTGGAATCTCGGTGTATCCGTGCTGCCCCGCTG
ACATCCTTGGAGCATCCCAGTAATCTCTTTGGAGTCTGCACGGACGAGTTTTGTCTTCAGATCACACCCAATTCTTTTAT
GCTTTCACACCCAATTCTTTTATGCTTTCACACCCAATTCTCTGGAACGTATCGACGTT-GCCCATCTGGTTCCTGATCA
T------------GCGTGTACGAATTTTATATTCTCTGG-------------CATAAGTTTGGTTTCTGTTTC-------
----------------------CCCAAACCGCTATAAAAACAACAGCCACCCCGACTCAAAAAACACAACGTATTCCATT
GTCACTAGCTACTGATCCCAGCCATGGCAAGCCGAGCTCTCGCCCCCTTCCAGCTCGCTGCCATCCTCCTGGTCGCGCTC
TTCGCCACGTGCCATGCCGGCAGCATCGCTGTGTACTGGGGCCAGAACGACGGCGAGGTGTCGCTGGCTAAGACATGCGC
GTCAGGTAACTACAAGTTCGTCGTCGTTGCTTTCCTCCCAAAGTTTGGCAAGGGCCAGAAGCCGGAGCTGAACCTCGCCG
GCCACTGTGACCCTTCATCTGGCGGC---TGCAAAATCCTGAGCAAGGACATCCACTCGTGCCAGTGCCGCGGCGTCAAG
GTCCTCCTCTCCCTCGGGGGCGCGGACGGCAGCTACGGCCTCTCGTCCCGCGGCGATGCACGGCAGGTTGCCATGTATCT
CTGGAACACCTTCCTGGGCGGCACGAGGTCGTCGTCTCGCCCCCTCGGGGACGCTGTGCTCGACGGCATCGACTTCGACA
TCGAGAAAGGCGGCTCCAAGTTCTGGGGTGACCTTGC-------------------------------------------
------------------------------------------------------CAGGGACCTCAAGAACTTGGACAA--
----GGG------------CGTGCTGCTGAGCGCGGCGCCACAGTGCCCTTTCCCTGACCAGT---------GGGACGAT
GGCGCGATCAGGACAGGGCTGTTCGACTTCGTGTGGGTGCAGTTCTACAACAACCCGGAGAGCCAGATCAGCGCAGGCCC
TGGAGCATTCTTGGCCGCGTGGAAGAGGTGGGAGTCATTGCCGATAGGGAAGCTCTTCCTGGGGCTGCCGGCTTCCAAGG
ACGCGGCGGGCACCGGGTTCGTGCCCGCCGGCAAGCTCAAGTCG---GTACTGCCGCTCATCAAGGGCACGCCCAAGTAC
GGCGGCGTCATGCTGTGGGCTAAGTTCTATGACGATCACACTGGATATAGCTCCGCCATCAAGGGCCACGTGTGATTCTC
CCTGGTATTTCTTCGCTTGATTGGCGCTGTCGTGTGTGCCGCTCCTGTACGATAGTATCAGGTGTTAATTGCTTGAAATA
ACATCATATTGGTAGCGACTATGTCCCAATATGTAAGGATCACGGTGTAGTTTCTTTGAAGCCGCCTTGTCCTAATCACT
TCAAATTTGGAACTCTACATAT---------TACATTATGCACTACATCGTTAGTATATCTATATAAAATGAAAGTATAA
CTATTGGTCAATGAACTATAGCTCGAGTTCAGCATCAATGCTAAATTTGAATACC-------------------------
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-----------------------------------------------------------------ACTACTTGACAGTAT
GCTATCCATATGCCAGAGCCATGAGTTGGTCACAAGATTTTATGGGTTTCACCTCTAGCCTATCTTAACTTGTTTGGGAC
TAAAGACTTTGTTGTTATTGTTGTTGCTGTTGTTGACAGTATAACATCTCAATATTTTAGGCAGGACAACTTTGGGCCTC
TCCTACCTAGAAGCAGTTTGATGGGTGACGTGGCAGTGGTTTCACATAGGTGGCACAAACTAAACATTTTCTCAATACAT
CACAACAATGGTTAAATAAGGAA---------AACTGAATAAAGGAATAAAAATAATAATGACATTTTAGAATTGGAAAG
ATAGTCTGTAAATAAAAAAATAAGCAGAGCGAGGAAACAAGTTTAGGAGCATTCACGAAACCTTAGGAATTATTTGTGAT
CACTCTCTATTTTCTCTGGGTTTTCCGTTATACTTATGACTTCTTTTCTTTTTAAAATTTCCTTGTTGTATACCACATAT
GGTGTTCCTATTTTTTTT-CATTCGTATTATAATTTTACTTATATTTTCTACTCCCTCC----ATATCATAATAAGTGAT
ATTTTGGGTTTGACTACTAACTTTGAATGTAACATATGTATAAACAGCATAAAAATATAAGATTTTAGAAATATTTTTGA
GACAAAAATCTATACTATTGTATTTGCAACTTGGAAAATTTAAAATGATATTCATGGACAAAGTATAT------------
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>chr3B_1
TGTTATTACTCTTGTTCTTACTTGGTAATCTCCTGCAGGAAAGTTTCCAACTTTGGTGTCTCACCAGGAATCCCTTGAGT
CCAAGGTTAATGAGACCAAGGCCACAGTCAAGTTCCAGTTGAAAAAGGTGCTTTGCATGGGTGTTGCCGTTGGCCACCTG
GGTATGGAGGAGAAGCAGATCTTCCAGAACGTGCAGATGAGCGTGAACTTCCTCGTCTCTCTGTTGAAGAAGAATTGGCA
AAACGTATGTGACGTGCCCTCTGCTATACCTGCGCACAATATTTTCAACAACATTTGGCTATTGATTGATGGTTATATGT
T-AAAATAGATTACTGATTCATCTTT-ATTTCTTGCAGGTGAGATGCTTGTACCTGAAGAGCACGATGGGAAAGGTGTAC
CGGTTGTTCTAGACTCTAGTCTTCTAGGATTTCCAGGAGATTGACAACTTGGGAACTTTTGTTGCTTTCTCAATTATCAA
ATTTTCGTGCGG-GACGAGTGACAATTATTGTCTTGTACTGAGATGGTTTGTTCTATTGTCTGGAACTTGATGACATTTT
ATCCGTTGCCCCTGTGCCTTCCTACTGCTCTGCCTGCTGTCACAGCCATCAGTTTAACGCTAGATTCAGCATTGGTCCAT
TGGTATTTACGACCGTGAGAATCTTATTTTACCGTGTGTTGGT-----TGGAATCTCGGTGTATCCGTGCTGACCTGCTG
GGATCCTTGGAGCATCCCAGTCATTTCTTTGGAGTCTGCACGGACGAGTTTTGTCTTTCGATCACACCCAATTCTTTTGG
GCT-----------------------TTCGCACCCAGTTCTCTGGAACGTATCGACGTT-GCCCATCTGGCTTTCTACAC
GATGTTCCTGATCA--------AATTTTATATTCTCTTTGTGCGGTTTCTCTCATAAGTTCGGTTTCTGTTTCAAGCGCG
GATAACTCCGTGGCCAGTAACCCCCAAACCGCTATAAATACATCAGCCATCCCTACTCAGAAAACACAGCGTACCCCATC
GTCACTAGCTACCGATCCCAGCCATGGCAAGCCGAGCTCTCACCCCCTTCCAGCTCGCTGCCATCCTCTTGGTGGCGCTC
TTCGCCACGTGCCATGCTGGCAGCATCGCTGTGTACTGGGGCCAGAACGACGGCGAGGTGTCGCTGGCTAAGACGTGCGC
GTCAGGTAACTACAAGTTCGTCGTCGTTGCTTTCCTCCCCAAGTTCGGCAAGGGCCAGAAGCCGGAGCTGAACCTCGCCG
GCCACTGCGACCCTTCGTCTGGCGGC---TGCAAAATCCTGAGCAAGGACATCCACTCGTGCCAGCGCCGCGGCGTCAAG
GTTCTCCTCTCCCTCGGCGGCGCGGACGGCAGCTACGGCCTCTCGTCCCGCGGCGATGCACGCCAGGTTGCCATGTACCT
CTGGAACACCTACCTGGGCGGCACGAGGTCGTCGTCTCGCCCCCTCGGGGACGCCGTGCTCGACGGCATCGACTTTGACA
TCGAGAAAGGCGGCTCCAAGTTCTGGGGCGACCTCGC-------------------------------------------
------------------------------------------------------CAGGGACCTCAAGAGCTTGGACAA--
----GAG------------CGTGCTGCTGAGCGCGGCGCCACAGTGCCCGTTCCCTGACCAGT---------GGGACGAC
GGCGCGATCAGGACGGGGGTGTTCGACTTCGTGTGGGTGCAGTTCTACAACAACCCGGAGTGCCAGATCAGCGCGGGCCG
TGGAGCATTCTTGGCCGCCTGGAAGAGATGGGAGTCACTGCCGATAGGGAAGCTCTTCCTGGGGCTGCCGGCTTCCAAAG
ACGCGGCGGGCACTGGGTTCGTGCCCGCCGGCAAGCTCAAGTCG---GTGCTGCCGCTCATCAAGGGCTCGCCCAAGTAC
GGCGGCGTCATGCTGTGGGCTAAGTTCTATGACGACCACACTGGATACAGCTCCGCCATCAAGAGCCACGTCTGATTCTC
CCTGGTGTTTCTTCGCTTGATTGGCGCTGTCATGTGTGCCGCTCCTGTACGATAGTATCAGGTGTTAATTGCTTGAAATA
ACACCATATTGGTAGCGACTATGTCCCAATATGCAAGGATCACGGTGTAGTTTCTTTGAAACCGCCATGTCCCAATCACT
TCAAATCTGGAACTCTACAT----------------------------CGTTGATATTTCTATATAAAATAAAAGTATAA
TTATTGGTCAATGAAGTATTGCTCGAGTTCAGCATCGATCCTAAATTTGAATTCC-------------------------
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-----------------------------------------------------------------ACTACC---------
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---------------------------------TGACAGTATAACATCTCAATATTTTAGACAGAACAAGTTTGGGCCTC
TCCTGCCTAGAAGCAGTTTGATGGGTGACGTGGCAGTGGTTTCACATAGGTGGCACACACTAAACATTTTCTCAATACAT
CACAACAATGGTTAAATAAGGAA---------AA---------GGAATTAAAATAATAATGTCATGTTAGAATTGCAAAG
ATAATATGTCAATAAAAAATTAATTAGAGTGAGGAAACAAGTTTAGGAGCATTCACTAAACCTTAGGAATTATTTGTGAG
CACTCTCTATTTTTTCTGGGTTTTCCTTTATACTTATGACTTTTTT-CTTTTTATAATTTGCTTGTTGTATACCACATAT
GGTGTTCCTA-TTTTTTT-CATTTCTATTATAAATTTACTTATAATTTTCTA---CTCC----ATATCGTAATAAGTGAT
ATTTTGGGTTTGGCCACTAACTTTGAATGTAACATATGTACAAACAACATAAAAATATAAGATTTTAGAAATATTTTTGA
GACAAA--TCTATACTATGGTATTTGTAACTTGGAAAAACTAAAATGGTATTCATTGTCAAAGTATATTTGTGACTGAAG
GTATTGCCCAAAACGTCACTTATTTGTGATATGGAAGGAGTAATTATATTTTATTTCATCCAAAAATATTCTTGACTTTA
CTACTACGTTTACGAAATCACTTCAGTATCATCCATTTTACCGGCTTGGGTCGGAAGAGGGCCCAAAGCTTTCCGATTTA
AAAGGTGGAGGTGTCATGTATTTTGGCATTCAAGTTGAGAAACCTGTATTTTTTCGCAAATACGCAGAGTTTGCGTATCA
TTTCATTGATAAAAGAAGTTAGAACAAGTACAAAGCGATATACAACACATGACACAGACGTAAGAGGTGTGAACATAGTG
TTTGGAGCAAAGAGACATGGGATGCTCGGGCTAAACAAGAAAAAAACACCGCTAAGCTCGCCATCCTAAGAAGTAGCTCA
GACCAACATCACGACGACCAATATCTCCTGATTCAGACCCAAGGACACCGCGAGCAACCAAAACAACGCCTTCACGAAGG
AGTATGGCGCCAAGACGCCATCGCCGTCCGATGCGGCAAACCGGACCTGGGATTTCCGCTAATGCTCGAAGGGGGGCCCA
GATAACGGCTGTGACAACGCCTTCAAGAAGGGGACGGCACCTGCGGATGTGGCCGCTGCCAGAATAGAATGCGGAGATTT
CTCCCTGGCTAGAGTCCAAGCAATCCCAAGCCGTCGGAGCACGAGTCAAAGGAGAGGGAGTCGAGCATGAGTCGGAACGA
CGACCACAGGAAGGGGAGCCACGCCCACCGACAGAGAGGCAACGGGCGCCGCTGGATTGAGATGGAACCTGTATTTTTGG
ATCATAACCAGTGAACCAAAAC----------------------------------------------------------
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-----GAAATGCACGTGTCCATCAAATTGACTAGGTGAAAGGCATTTTCCACTCATGGATTGAGACGGGTTGCATTAAGG
AATGCTTGACACACATCGTCCATGAAAGAAGAATGGGGAAAAAGGTCATGATGTCATTGACCATGCTTTGCTCTCGAGAA
ATTTGAAACAAATGTACCGTGAGAGTCTTCCGCAACATCCCTACGCTCCACACCTTGTTTTACCTTGTAGTAATAAAATT
GAGACAACAAATTAGGTTTTCTTAGCCGCTAGGCACTTA-GGTCATATTTGGAGGGAGAGCAGACTTCTATTGTATCATG
TTGTACTATACTCTTTCTTATCAAATGAACGAAGGCTAATTTTTGCCCCCGCTTAGTATTCTTCTTCCACAAAACTACCG
GAACCGACCTCAAAAAAGGAAGGAGTTATTCCACCTTGCAAGTATACATG------------------------------
-----------------------------------------------TCTCTAAGGCGAGCTTGGGTTGTTAGGGCCTCA
GTTTAACTAACGAAATGCATGAATTATGCCATCAAAAGTATAACTTTTGAAAAATTCATCCGATGACGAATCAATATATT
TTTCTAGTGATATATAAACACATTTTACTAGTCAAATTGAAGACCTAAAAACCTGTACCTACCCTATAGACCCTAATAGA
GGGAGTGTTTGAAATTAAGCAATATATGTAGTTTTGTGATGTTGTGGATACTCAAAATCACCAAATTCAGTAGAAATATT
TAATATTCCTCTGTTTAGAAGCATTAACCATAGTTGAGGTAGCTTCAAGCCGCAAAATTGCCGTGACACAATAAACTACC
AATAGAAGTATAAGAGCATCTACAACGGGACCCGGACCCACTCCAAACATTTGGATGGGCTGCTCGGTTAGTGTCCTGGC
GAAAAAATGCCACCTAACCTGGCTCCCCATATCCGGCCTAAACGCCCGTACTGACCGGCACTCCTCATACCCAGCCTATA
TCTGGAGCGGATATGGGGACGCCCAGATGTGGGTGCCACGTCAGATCGGCCGGCTAGGGCCCGCGTTGCCCCCACCGGTG
CCCCACCATATCGGACAAACCCTAGTGAAACCCTCACTTTCTCAGTCTGCACTCGTCTTCTCTGCTTCCTCATCTCCTCC
ACTTCCTCCCAAACCCCCCTTATGCCATGGCCAACTCTGGTTAGGACTCCGACAGCGAGCCCGATCCCATGGACTGGGAC
AGTCCCGTGAAGGAGGAGGATGACAAATCTAGCAGTGCGCCATACAAGGAGGAGCTCGCGCTCCGCATCGTCATCCAGCA
CTCGTGCGTGGACACCGGCGGGAGCTCGAGCTCCGTGGCACCCGACGTGAGCTCCTCCACCTTCCATCGGCGTAATGCGG
GTCACGGTCGCCCGTCCCGCGTCTGCCCATCCCACTCCGCGCCGCTCCAGATCCGGAGCGCGGGCGTCTCCCCTTCCCCT
CCAGTGCCAGCATCGCCAGGCAGATGTGGGTGCTCGTGCCCGCGGCTCCCGTGCGAATGCGCATGCCAGAGTCAAAGGCA
AAGGCGGCCCGGCGGAGGGCGGTGGCCGCAGTGGAGTCCGACTCTTCCCGCCACCGAGCGCACTCCATCCCGTTGACTCG
GAGGAGGTACTCCTCCGTGAGGTCATGTGGCGGTCGTTGACGCACGACGATGCCTCCGACGCAAGAACGCGAAGGCGCTC
TGCCTTGGGCTCGAGGCATCCGAGCGCCTTGCGCGGGAGAAGGAGACCGTTGCTTCCAAGGCCGCGCACCACGCGAAGGA
GTAGCAGCGCCTCCTGTGCCGCCTCTCCGGCTACATTTCGTCCGCATCGGAGAGCGGCACCACCACGGACGACGACGACG
ACCCTCCCACCTCCGATGCGTACAGGGAGGAGATGGACCGCCGCGCCGCCGACCGCAAGGGCAAGGGCCCGACCAAGTGG
TGAACTCCGACCAACTCCGCCTCTGCATTTTATCTAGTTATATTTTCTTTGTATTATAAACCCGATGAACTATGTCTTCT
GGGTCAGATGCACTATGTCCTATTAACCATGTGGAGAAGTTTATCGTTCGATGTTGATCTACATTAATTTTGCATGCATT
GCATGAGTTCGGTGCGGGCAAATGGCTACTACAGTTGTGGATAGCAAAAAATGGACACTGTCCGGTCACTGCCAGTGGGC
ATGTCCGAACACATCTGTGGGTGTTTGGGGGACTGTTTTTGCGAGTTGTGGTTGTAGATGCTCTAAGACTGCATAAGTGC
TCTGCCTGGTACTCTGG---AGTAGAAAACAGAGGAGAGGGTTCAGTTTTTGTTGTACGTCTTGTTGATGGTTTGGTCTA
GCACGGTAGGGCGTTTGTGATCTGAACGCACTCTGATTTACTAATAGTTTATCAACCATTGATCAGCCCGAGTAAATTAC
GCAAAGAGATTACGGACCGCAAACGGAACACAAAACATTGCCGGTAAATTGGTAAATTTAGACGCAGGAGCGGACAAGCG
ACGGCAGGAAAGTCACTGAAAAAGCCTCCATGACGCTCCATCAAGACACTATAAAAATCCAAACATACCCGGCATCCATC
ACAACTCAAAATTCACAGCGCACCTCCTCACCGGTCTCTAGTCTCTACTCCTTCCTGTACCAGCTATGGCAAGCCGAGCT
TTCACCACCTTCCAGCTCACGGCCACCCTCCTCGTGGCGCTACTGGCAACGTGCCATGCCGGCAGCATCGCCGTGTACTG
GGGCCAGAACGACGGCGAGGCATCGCTGGCCGAGACGTGCGCGTCTGGAAACTACGAGTTTGTCATCCTGGCTTTCCTCC
CCAAGTTCGGCAAGGGCCAGACGCCACAGCTGGACCTCGGCAGCCACTGCGACGCCCCGTCGGGCGGCTGCAAAGGCCAG
AGCAAGGACATCCAATCTTGCCAGCAAGGCGGTGTCAAGGTCCTCCTCTCCATCGGCGGCGGAGACGGCAGCTACGGACT
CTCATCGCCCGGTGATGCACGGCAGGTTGCCATGTACCTCTGGAATAACTACCTGGGCGGCACGTCATCGTTCCGCCCTC
TCGGCGACGCCGTTCTCGACGGCATCGACTTCGACATCGAGCTCGGGGGCGCTAAGTTCTGGAACGATCACGCCACAGAC
CTAAAGAGCTTAGGAAAGAACGGTGGCAAGACCGTGCTGCTGAGCGCGGCACCGCAGTGCCCGTTCCCGGATGAGTGGGA
CGGCAACGCGATCAACACGGGTCTGTTCGACTTTGTTTGGGTGCAGTTTTACAACAACCCAGAGTGCCAGTTCAGCGCGG
GGCGTGGAGCGTTCATGGACGCATGGAAAAGATGGGAGTCGGTGCCGGCGGGGAAGATCTTCCTAGGATTGCCGGCCTCC
AAGGACGCCGCGGGCACCGGGTTCGTGCCCGCCGGCGAGCTCACATCCCGCGTGCTTCCGCTGATCAAGGGAACGCCCAA
GTATGGAGGCGTCATGTTGTGGTCTAAGTACTACGACGATCGCACTGGATACAGCTCCGCCATCAAGAGCCATGTGTGAT
TCT-------
>chr3D_1
TGTTACTACTCTTGTTCTTACGTGGTAATCAACTGCAGGAAAGTTTCCAACTTTGGTGTCTCACCAGGAATCCCTCGAGT
CCAAGGTTAATGAGACCAAGGCCACAGTCAAGTTCCAGCTGAAAAAGGTGCTTTGCATGGGTGTTGCCGTTGGCCACCTG
GGTATGGAGGAGAAGCAGATCTTCCAGAACGTGCAGATGAGCGTCAACTTCCTCGTCTCTCTGTTGAAGAAGAATTGGCA
AAACGTATGTCATGTGCCCTCTG--------------AATATTTTCATGAACATTTGGCTATTGATTGATTGTTATATGT
T-AAAATAGAGTACTGATTGTTCTGT-ATTG-TTGCAGGTGAGATGCTTGTACCTGAAGAGCACGATGGGAAAGGTGTAC
CGGTTGTTCTAGGCTCTAGTCTTCTAGGATTTCCAGGAGATTGACAACTTGG-AACTTTTGTTGCTTTCTCAATTATCAA
ATTTTCGTGCGC-GACGAGTGACAATTATTGTCTTGTACCGAGATGGTTTGTTCTATTGTCTGGAACTTGATGACATTTT
ATCCGTTGTCCCTGTGCCTTCCTACTGCTCTGCCTGCTGTCAGT--CATCAGCTTAACGCTAGGTTCAGCATTGGTCCAT
TGGTATTTACGACCGTCAGAATCTTATTTTACCGTGTGTCCGTT--GGTGGAATCTCGGTGTATCCGTGCTG-CCTGCTG
GGAGCCTTGGAGCATCCCAGTCGTTTCTTTGGAGTCTGCACGGACGAGTTTTGTCTTTCGTTCTCAC-------------
--------------------------TTCTCACCCATTTCTCTGGATTGTATCGCCGTTTGCCCATCTGGGACTGAAGTT
ACTGTTCAAGGTGGCATTTACTAATTTTATA--------------------------------TTTCAGTTTCAAGCGCA
GATAACTCCGTGGCCACTAACCACAAAACGGCTATAAAAACCACAGCCATCCCGACTCAAAAAACACAA----------C
GTCACTAGCTACTGATCCCAGCCATGGCAAGCCGAGCTCTCACCCCCTTCCAGTTCGCCGCCATCCTCCTGGTGGCGCTC
TTCGGCAAGTGCAATGCTGGCAGCATCGCTGTGTACTGGGGCCAGAACGACGGCGAGGTGTCACTGGCTAAGACATGCGC
GTCAGGTAACTACAAGTTCGTCGTCGTTGCTTTCCTCCCCAAGTTCGGCAAGGGCCAGAAGCCGGAGCTGAACCTCGCCG
GCCACTGCGACCCTTCATCTGGCGGC---TGCAAAAGCCTGAGCAAGGACATCCACTCGTGCCAGCGCCGCGGCGTCAAG
GTCCTCCTCTCCCTTGGCGGTGCGGACGGCAGCTACGGCCTCTCGTCCCGCGGCGATGCACGACAGGTTGCCATGTACCT
CTGGAACACCTTCCTGGGCGGCACGAGCTCGTCGTCTCGTCCCCTCGGGGACGCTGTGCTCGACGGCATCGACTTCGACA
TCGAGAAAGGCGGCTCCAAGTTCTGGGGTGACCTCGC-------------------------------------------
------------------------------------------------------CAGGGACCTCAAGAACTTGGACAA--
----GGG------------CGTGCTGCTGAGCGCGGCGCCACAGTGCCCTTTCCCCGACCAAT---------GGGACGAC
GGCGCGATCAGGACGGGGCTGTTCGACTTCGTGTGGGTGCAGTTCTACAACAACCCGGAGTGCCAGATCAGCGCGGGCCG
TGGAGCATTCTTGGCCGCGTGGAAGAGATGGGAGTCATTGCCGATAGGGAAGCTCTTCCTGGGGCTGCCGGCTTCCAAGG
ACGCGGCGGGCACCGGGTTCGTGCCCGCCGGCAAGCTCAAGTCG---GTACTGCCGCTCATCAAGGGCACGCCCAAGTAC
GGCGGCGTCATGCTGTGGGCCAAGTTCTATGACGACCGCACTGGATACAGCTCCGCCATCAAGAGCCACGTCTGATTCTC
CCTGGTGTTTCTTCGCTTCATTGGTAC------------------------------TCATGTGTTAAGTGTTTGAGATA
ACTCCGTATTGGTAGCGACTATGTCCCAATATGCAAGGATCACGGTGTAGTTTCTTTGAA---GCCATGTCCCAATCACA
TCAAATTTGGAACTCTACATAT---------TACATTGTAAACTACATCGTTGATATTTCTATATAAAATAAAAGTATAA
TTATTGGTCAATGAACTATAGCTCGAGTTCAGCATCGATCCTAAATTTGTTTTTTTTTTAAATTGCATCGATCTTAAATT
TGAATACCACTAACTTTTTTGAGGGAATGCCATCATGGCGCACTTTATTAATTTGGCAAAATAGTTACATCATTAACCAG
AGTATTAATCAGGAACCCTGGGGGTTCATCGACCCACGTACAAGATTCATTTCTATCATAAGCAAACTAAC---------
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---------------------------------TGACAGCATAACATCTCAATATTTTAGACAGGACAACTTTGGGCCTC
TCCTGCCTAGAAGCAGTTTGATAGGTGACGTGGCAGTGGTTTCACATAAGTGGCACAAACTAAACATTTTCTCAATACAT
CACAACAATGGTTAAATAAGGAAAACCGGATAAA---------GGAATTAAAATAATAATGACATATTCAAATTGCAAAG
ATAATCTGTCAATAAAAAATTAAGTAGGG-GAGAAAACAAGTTTAGGAGTATTCACGAAATCTTAGGAATTATTTGTGAG
CACTCTCTATTTTTTCTGGGTTTTCCCTCATACTTATGATTTTATT-TTCTTTTTAATTTCCTTGTTGTATACCACATAT
GGTGTTCCTA-TTTTTTTTCATTTGTATTATAATTTTACTTATATTTTTCTA---CTCCCTCCATATCGTAATAAGTGAT
ATTTTGGGTTTGACGACTAACTTTGAATGTAACATATGTATAAACAACATAAAAATATAAGATTTTAGAAATATTTTTGA
GACAAA--TCTATACTATGGTATTTGCAACTTGGAAAAATTAAAATGATACTCATGGACAAAGTATAT------------
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>chr3A_990
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------------TGACCCCAGCCATGGCAAGCCGAGCTCTCACCACCTTCCAGCTCACGGCCACCCTCCTCGTGGCGCTA
CTGGCAACGTGCCATGCCGGCGGCATCGCCGTGTACTGGGGCCAGAACGACGGCGAGGCATCACTGGCCGAGACGTGCGC
GTCTGGAAACTACGAGTTTGTCATCCTGGCTTTCCTCCCAAAGTTTGGCAAGGGCCAGACGCCACAACTAGACCTCGGCA
GCCACTGCGACGCCTCGTCGGGCGGC---TGCAAAAGCCAGAGCAAAGAAATCCAGTCATGCCAGCGCGGCGGTGTCAAG
GTCCTCCTCTCCATCGGCGGCGGAGACGGCAGCTACGGTCTCTCATCACCCGGTGATGCACGACAAGTTGCCATGTACCT
CTGGAACAACTACCTGGGCGGCACG---TCATCATTCCGCCCTCTCGGCGACGCCATACTCGACGGCATCGACTTCGACA
TCGAGCTCGGCGGTGCCAAATTCTGGAATGATCTCGC-------------------------------------------
------------------------------------------------------CACGGACCTGAAGAACTTAGAAAA--
----GAACGGTGGCAAGACCGTGTTGCTAAGCGCCGCACCGCAGTGCCCCTTCCCGGATGAAT---------GGGACGGC
AACGCGATCAACACGGGGCTGTTCGACTTCGTTTGGGTGCAGTTCTACAACAATCCAGAGTGCCAGTTTAGTGCGGGGCG
TGGAGCGTTCATGGACGCGTGGAAAAGATGGGAGTCGGTGCCGGCAGGAAAGATCTTCCTAGGACTGCCAGCCTCCAAGG
ACGCTGCAGGCACCGGGTTCGTGCCCGCCGGGGAGCTCACTTCACGCGTGCTTCCGCTCATCAAGGGCTCACCCAAGTAC
GGCGGCGTCATGCTGTGGTCAAAGTTCTATGATGATCGCACTGGATATAGCTCCGCCATCAAGAGCTATGTGTGATTCGC
CTGGGTGTGCTAGTATTTGTGTGCCCCACTGTCCCTTG----TCCTGTATCATAGTATCATGCGTTTATTGTTTGAGATG
TCATCATATTGGTAGCTAGTATACTGGTGTACATGAGAAGATATGCATCCATTATTGTAAATATTTATTAAGAATTTTAA
TATACTTTCTTTAATTAAGATAAGTCCCATATACATCATGTACTACACTGTCGATGTTTCTGCAGAG-----AAGTACAA
TTTTTAGTCAATCAGCTAAAGCTTGGGTTCAAC-----------ATTTGAATACC-------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATTATC---------
--------------------------------------------------------------------------------
---------------------------------CTACAAAATGACTCTCGAGTGGTCA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------TATTTTTCTATTCAACTTGAAGAACTTGTTAT------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------TTTTTGG
AACATTATCGATGGACCAAAAACATAACATTCTCAGTTTTTTTGTTGGTTACCTTGAGTGCCTCACCTGGAATTAATTGG
GCATGGCAAAATGGTGAACTATTGCTAGTGGTCAGGTAGTTAGACCAACATATAATGGTTGCTTGTCTACCCACTACTAA
GATCTTGAGAGATAGCTACATCCTCCCATGGTGGCTTAGTTACAGCTTTCCATGGCGGCTCGGTTACATGTATGTGTTGG
TTCTAATGGCGAAATTCTGGCGCTGAACTGAAGTGGAAGCCGATGTTTGCCTGCTCAAACTTCCACAACTTTTCAATTTC
TCCTTCACTGTATTTATTCGAGCAACAATGAAAAGAACGGGGTCAGGGCCCCTAGCTTTGCGCCATTACGACCGTGGAGC
TCGTGCCATCCCACGAGTAGATTGGTAGGGCGCCAGACTTGCTCCTTGTGGTTTAACCTCGAGCTAATCTCACTAACAAT
TTAACTGATGAAACTGATGAAGGAGCAGGCACACAAGACAAATTGATAAGTTTGGCATTCCCAATCCACCAAGTGGTGAT
TTTGAGCAGCTATTTGACGAAATGAGCTATTCATTTACATAGTACGGGAAGCTGAAATAGACCTAGGAATTTAGCATGGG
GATTGCCGTAATTCACATATATAATGTATATAAAAGGTAGCTATAATAAATAAGTTCAAAATTTGTAAAATGACACTACA
AATAGTATAATTTCTTGTAAACAACATTAGAATTATGAGAAATAGTCTTAAAACAACATTAAAGTGCTAGATAATTAGTG
TTAGTCATATACTGTAAACTATTTTGCATTTTTAGAGGGGGCGTCCATGGCTCATCTTCATTTATGAAAACATTCACGTG
TATGCCACTTCCACAAGTTGCAATGTCCGTTAGCCCCTGTTCAAATAACAAAAGTACCTTCACAATTGAAAAGGGAAAAC
CTTGTGATGACAATGACAGGGATCTGTTCTACACCTCAACAACCGTCACAATAAGAAGGGGGGAGGATGCTTTTGGGATG
CGGCATGGGAATGTGCAACGACTTGGCAACATGGCTCTACCAATCTCTAATAGGGAAAAATAGTGTCTTCATGATGCTCC
TTAGTGAAATGCACGTGTCCGTCAAATTGACTAGATGGAAGGCATTTTCCACTCATGGATTGCATTAAA----------G
AATGCTCGACACACATCGTCCATCAAAGAAGAATGGGAAAAA---TCATGATGTCATTGACCATGCTTTACTCTTGAGAA
ATTTGGAAGAAATTACCGTGAGT-GTCTTCCGCAACATCCCTACGCTCCACACCTTGTTTTAGCAT---GTAATAAAATT
GACACAACAAATCTGGTTTTCTCGGCCGCTAGATACTTGGGGTCATATTTGGAGGGAGAGTACACCTCTATTGTTTCATG
TTGTAATATACTCTTTCTTATTAAATGAATGAAGGCTAATTTTTGCCCGCTTTTATTCTTCTTCTTCAAGAAAACTATGA
GAACCGACCTCAAAAAAGGGAGGACTCGTTCCTACCTTGCTAGCATATACTCTCTCCGTTCTAAAATAGATGACTCAACT
TTGTTAGTACAAAGTTGAGTCATCTATTTTGAAACTGAGGGAGTAGATCTCTAAGGCGAGCCTGGGTTGTTAGGGCTCCA
ATTTAACTAAAGAATTGCGTGTAATATGCCAAGTATAATT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TTAACCATCGTTGAGGTAGCTTCGAGCCGCAAA-TTACCGTGTCACAATAAACTATT
AGTACGAGTATAAGACTT--------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------TGCATATGTGC
TCTGCCTGGTACTCTTCTGCAGTAGAAAACAGAGGAGAAGGCCCAGTTTTTATGGCACGTATTGTTGATATTTTGGTTGA
ACACGGCAGGGCGTTTGTGATCTTAACGCACTCTCTTC-ACTAATCGTTTATCAACTGCTGATCAGTCTGAGTAAATTAA
GCAAGGAAAATACTAACTTCAAACGGAACGTGAAACATTGCCGGTAAAT--------TTAGATGCAGGAGCGGACAAGCG
ACGGCAGGAACGTCACT-AAAAATCGTTCATGATGCTCCCTCAAGACACTATAAAAATTCAGACATACCCAATATCCATC
ACAGCTAAAAACACAGAGCGCTACTATACCAGCTAGCCAGGTACGCTCCGCTTGATC--CCAGCCATGGCAAGCCGAGCT
CTCACTCTCCTCCAGCTCACTGCCACCCTCCTCGTGGCGCTACTCGCGACTTGCCATGCCGGCAGCATCGCCGTGTACTG
GGGCCAGAACGACGGTGAGGCGTCGCTGGCTGAGACGTGCGCGTCTGGAAACTACGAGTTCGTCATCCTGGCTTTCCTCC
CAAAGTTCGGTAAGGGCCAGACGCCACAGCTGGACCTTGGCAGCCATTGCGACGCCTCGTCGGGCGGCTGCAAAAGCCAG
AGCACGGACATCCACTCTTGCCAGCGCGGCGGTGTCAAGGTCCTACTCTCCATCGGTGGTGGAGATGGCAGCTACGGCCT
CTCATCACCTGGTGATGCACGACAAGTTGCCATGTACCTCTGGAACAACTATTTGGGCGGCACGTCATCATTCCGCCCTC
TCGGCGAGGCGGTACTCGATGGCATTGACTTCGACATCGAGCTCGGTGGTGCCAAATTTTGGAATGATCTCGCCACAGAC
CTGAAGAAATTGGGAAAAAACGGAGGCAAGGCCGTGCTACTGAGCGCGGCACCGCAGTGCCCATTCCCGGACGAGTGGGA
CAGCAATGCGATCAACACGGGTCTGTTCGATTTCGTTTGGGTACAGTTCTACAACAACCCAGAGTGCCAGTTCAGTGCGG
GGCGTGGAGCGTTCATGGACGCATGGAAAAGATGGGAGTCGGTGCCGGCAGGGAAGATCTTCCTAGGACTGCCGGCCTCC
AAGGACGCCGCGGGCACCGGGTTCGTGCCTGCCGTTGAGCTCACATCACGCGTGCTTCCACTCATCAAGGGCTCGCCCAA
GTACGGCGGCGTCATGCTTTGGTCAAAATTCTATGATGATCGCACTGGATACAGCTCCGCCATCAAGAGCCATGTGTGAT
TCTCCTTGGT
>chr3B_990
--------------------------------------------------------------------------------
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------------TGATCCCAACAATGGCGAGCCGTTCTCTCACCCCTTTCCAGCTCACTGCCACCCTCTTCGTGGCACTC
CTTGCCACCTGCCACGCGGGCAGCATCGCCGTGTACTGGGGCCAGAACGACGGCGAGGCGTCGCTGGCTGAGACGTGCGC
GTCCGGGAACTACGAGTTCGTCATCCTCGCTTTTCTCCCAAAATTCGGCAAGGGCCAGACGCCGCAGCTGAACCTTGCCA
GCCACTGCGACCCTTCCTCCGGTGGT---TGCAGAGGCCAGAGCAAGGACATCAAAGAGTGCCAGAGCCGCGGCGTGAAA
GTCCTGCTCTCTATCGGCGGCGGCGACGGTAGTTACGGCCTCTCGTCCCCCGGCGACGCACAGCAGGTTGCCAGGTATCT
CTGGAACAACTACCTTGGCGGCACG---TCCTCGTCCGGTCCCCTCGGTGACGTCGTGCTCGACGGCATTGACTTTGACA
TCGAGCAAGGCAGCGCCAAGTTCTGGAACGATCTGGC-------------------------------------------
------------------------------------------------------CGCGGACCTGAAGAACTTAGGAAA--
----GAACGGAGGCAAGACCGTGTTGCTGAGCGTGGCACCGCAATGCCCGTTCCCAGATGAAT---------GGGACGGC
GGTGCGATCAGCACGGGATTGTTTGACTTTGTGTGGGTGCAGTTCTACAACAATGAGGAATGCCAGTTCAGTGCGGGACG
CGGGGCATTCATGGACGCGTGGAAGAAGTGGGAGTCGGTGCCGGCCGGGAAGATCTTCCTGGGGCTGCCGGCCTCCAAGG
ACGCGGCAGGCACGGGGTTCGTCCCTGCCGGAGAGCTCACCTCACGTGTGCTGCCGCTCATCAAGGGCTCTCCAAAGTAC
GGTGGTGTCATGCTATGGTCCAAGTTCTATGACGATCGCACGGGC-----------------------------------
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-------------------------------------------------TACAGCTCGGCCATCAAGAGCGATGTGTGAT
TCTC------
>chr3D_990
--------------------------------------------------------------------------------
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------------TGAACCCAGCCATGGCAAGCCGACCTCTCACTACCTTCCAGCTCACTGCCACTCTCCTCGTGGCGCTT
CTCGCTACGTGCCATGCCGGCAGCATCGCCGTGTACTGGGGCCAGAACGACGGCGAGGCGTCACTGGCCGAGACATGCGC
GTCAGGGAACTACGAGTTCGTCATCCTCGCTTTCCTCCCCAAGTTCGGCAAGGGCCAGACGCCGGAGCTGAACCTGGCCA
GCCACTGCGACCCTTCGTCGGGTGGT---TGTAGAAGCCAGAGCAAGGACATCAAAGCGTGCCAGCGACGCGGCGTCAAA
GTCCTGCTCTCCATCGGCGGTGGCGACGGGAGCTACGGCCTCTCGTCCCCAGGAGACGCCCGGCAGGTTGCCATGTACCT
CTGGAACAACTACCTCGGCGGCGCG---TCGTCGTCCGGTCCCCTCGGCAACGTCGCGCTCGACGGCATCGACTTCGACA
TCGAGCTCGGCAGTGCCAAGTTCTGGAACAACCTGGCCAGGTAAGCTGGAGCAACTAGCTCACACCCGCGCGCCGTTCGA
ACTAGTCGTCGTGTATCGACGTGTACGTGCTCATGTATATTGGCGCCATGTGCACAGGGACCTCAAGGACTTGGGCAA--
----AAACGGCGGCAAGACGGTGCTCTTGAGCGCGGCGCCGCAGTGCCCGTTCCCCGACGAGT---------GGGACGGC
GGTGCGATCAGCACGGGGCTGTTCGACTTCGTATGGGTGCAGTTCTACAACAACGAGGAATGCCAGTTCAGTGCGGGGCG
TAAGGCATTCATGGACGCGTGGAAGAAGTGGGAGTCGGTGCCGGCGGGGAAGATCTTCCTGGGGCTGCCGGCCTCCAAGG
ACGCGGCGGGCACCGGGTTCGTCCCTGCCAGCGAGCTCACTTCACGTGTGTTGCCGCTCATCAAGGGCTCTCCAAAGTAC
GGTGGTGTCATGCTGTGGTCCAAGTTCTATGACGACCGCACGGGC-----------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------TACAGCTCCGCCATCAAGAGCGACGTGTGAT
TCTC------
>chr3D_1073
--------------------------------------------------------------------------------
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---------------GCGGGCGGCATCGCGATCTACTGGGGCCAGAACGGCAACGAGGGCACGCTGGCGCAGGCGTGCGC
GACGGGAAACTACAAGTTCGTCAACGTGGCCTTCCTCTTCACCTTCGGCAAGGGCCAGAAGCCGCTGCTGAACCTGGCCG
GGCACTGCGACCCGGCGACCAGCGGCTCGTGCACCTTCGTGGGCGCCGACGTCAAGTCCTGCCAGAGCCGCGGCATCAAG
GTCCTGCTCTCCATCGGCGGCGGCGTCGGCAGCTACGGCCTCTCGTCCGCCGCCGACGCCAAGCAGGTCGCGGAGTACCT
CTGGGAGAACTACCTCGGCGGCACG---TCGACGACGAGGCCCCTCGGCGACGCGGTCCTCGACGGCGTCGACTTCGACA
TCGAGAGCGGCGGGAGCGCGCACTGGGACGACCTGGC-------------------------------------------
------------------------------------------------------GCGGGAGCTCAAGAAGTACTCGGGGA
AGGGAAGCGCCTACAAGCCGGTGTACCTGGCGGCGGCGCCGCAGTGCCCGTTCCCGGACGCGATGCTCGGCGGGCTCGGC
GGCGCGCTCGGCACGGGGCTGTTCGACTACGTGTGGGTGCAGTTCTACAACAACCCG-----------------------
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----------
>SNPs
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
----------S--------S----S--------S----------------------------------------------
-S------------------------S-------------------------------------------S---------
--------------------------------------------------------------------------------
------------S--S------------------------------S---------------------------------
--------------------S-------------------------------------S--------------SS---S-
S---------------------------------S----SSSSSSS--------------------------S--S----
SS-------------------S--S--------------------------------SS-------------------SS
---SSSSSSSSSSSSSSSSSSSSSSS---S------S---------------------------------S--SSS-SSS
S--------------S-S---S---------------SS---------------------S-------------------
-------------------------------------------------S-----------------------SS----S
-----------------------------------------S-------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------S---------------------------------------------------------S--------------
-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------S
--------------S---------------------------------------------S-------------S----S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------S------------------------S------------------------------------------------
------------------------------------------------------------S-----S-----S-------
----------------------------------------S-----------SS---S------------S---------
S-----------------------------------S--S----------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------S-------------------
----S---------------------------------------------------------------------------
----------------------------------SSSSSSSSS-----S----------------S---------S----
---S-----S---------S----S----S-------------------------------------------------S
-------------S------------S---------------S---S-------S-------------------------
----------S------------S------------------------SSSSSSS-------------S-----------
--------------S-------------------------------S---------------------------------
------SS----------S-------------------S-----------------------------------------
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>forward_265
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-----TATGTTATGTGCCCCCTGCC-------------------------------------------------------
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>reverse_2221
--------------------------------------------------------------------------------
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------------------------------------------------------------GCCGCCTTGTCCTAATCACT
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----------
