>input_sequence_66317
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-------------------------------ATGGA-----------------------------------TCCAAAGAT
GTGATTTTTCTTTTCTTTCTAGTTCTCAGTAAGAAATCTCTGAGTTCTTCCTCTGCTTTTCTCACTG---AATT------
ATATGTGCGTTCTGCA----GCAGCGGCGGGAATGGGATCTGCCGGGCGCCGCCGCTGGAGGCGCTGCTGTTCGACATCG
ACGGCACGATGTGCGTCTCCGACCCGTTCCACCACCGGGCCTTCTCGGAGCTCCTCCAGGGCCTGGGCTACAACGGCGGG
GCGCCCATCACGCCGGAGTTCGGCATGGCGCACATGGCCGGCCGCAGCAACGAGCAGATCGGCCGCTTCCTCTTCCCGGA
CTGGCCGCAGGCCCGCCTCGGCGCCTTCTTCGCCGAGAAGGAGGCCCTCTTCGCGCGGTACGCCGGCGAGGGGCTCCGGG
AGGTGCCCGGGCTGGCGGAGCTGTGCCGGTGGGCGCGGGAGCGCGGGCTGAAGCGGGCGGCAGTCACCAACGCGCCGCGC
GCCAACGCCGAGCTCATGATCGGGATCCTCGGCCTGGCCGACTTCTTCCAGCTCGTCGTCGCCGGCGAGGACTGTGGCGA
GGGACGCTCCAAGCCCTGCCCCGACCCATACCTCCGCGCGCTCGCCCTGCTCGGCGCGTCGGCGGAGCGGTCTCTGGTGT
TCGAGGACTCCGTCGTCGGCGTGCAGGCCGGCGTGGCCGCGGGGATGCCGGTCGTGGCTATCGCGAGTGAGAGCCGGGAG
GCCAAGGTCGTCGCCGCCGGCGCGTCCATGGTCGTCAGGGACTACCGCGACGCCAAGCTCTGGGCCGCGTTGGACGCCGC
CGCCGGAGCTCCCAAGATAGATTCAGAGCTGAGCCTGAGCGCGGTG-------GAGCCTCCTGTTTCCGTTCCCGTGGAG
AATTGTTGA-----------------------------------------------------------------------
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>chr7A_1_TraesCS7A01G027100
AATTAATCTCTAATTTGTTTATGCGGCACATGACCAACTACACGAATTGTAAAAATTATATTCACAATTATGTTTTTTTT
AGCAATTTCAGGAATGCATATAATCTTACTGTAAATTTTATTACCCTGACACCTAACACACAACTAAATAACACTTAACC
GAAAAGTGATTGAGTAAATCATGAGAGGGAATGATCCTAAAGGAAAATGTGAGGGGTCCAAAGGTGTCGCTACCAAAGTC
GGGGCAGCCCAATCCCGCTCCTCCTCATAGTGGGTTTGGTTTCTCTTTTGTTTCAGTGGCAGAGATGTTTGCAGTGTGGT
GTTTTGGTGTGTCTGCTCTGATTGCCAATAAGAATCTCAAACCCTCTATGTTAAGCATGTTTAGGTTGTCTAGTGCTAGG
TTAATGATCATATTATGGTAATCCTAAAGTATCGTGTCTGACACTAAACAACTAATTAGATCCATTGCCC---------T
TTTTAATGACCAAAGAGATTGTATAGCACAATGTTATGCTAGTACGAAGCACAATTGTATACTCTGAGCTTTTAGTGTGA
TACACTTTTGTTTCTTCTTTCTTTCTTGATTTCTACT---AGAGAAGATTGTTGTTAAA-AAGCAAATAAATAACTCCCG
TCTCGGTGACCCAAGATTGTTGTGTTGTTGATGGGACCAAAGAAAATCCCAAAAATTGTTGGGCTTATTACCGACCACGA
CCCTCTTAACCTTGAGAGCTGAGAGATCTCGGCCTG-AAGTTGGA--------TGAAACTCATCTTTCTTAATCTGAAAA
AACATATTGCAATGATGTATACAGTTAGTTGCAATGTGAACTGCTCC-TTGTCTGAAAGGTCAAATGCTGGGACTGGTGA
GATGATGATGATG------------GATTGCCACCAACCGCACTCACAAACAAACCTCACCTA-----------------
-------------------AACTTTCTCTCATTGCCAATATAATCATAGCCATCAAAAGTATCCATCATATCTGCAGATC
AGCAGAGCATCCTCAAGAACACAACATCCCCATGGA-----------------------------------TCCAAAGAT
GTGATTTTTCTTTTCTTTCTAGTTCTCAGTAAGAAATCTCTGAGTTCTTCCTCTGCTTTTCTCACTG---AATT------
ATATGTGCGTTCTGCA----GCAGCGGCGGGAATGGGATCTGCCGGGCGCCGCCGCTGGAGGCGCTGCTGTTCGACATCG
ACGGCACGATGTGCGTCTCCGACCCGTTCCACCACCGGGCCTTCTCGGAGCTCCTCCAGGGCCTGGGCTACAACGGCGGG
GCGCCCATCACGCCGGAGTTCGGCATGGCGCACATGGCCGGCCGCAGCAACGAGCAGATCGGCCGCTTCCTCTTCCCGGA
CTGGCCGCAGGCCCGCCTCGGCGCCTTCTTCGCCGAGAAGGAGGCCCTCTTCGCGCGGTACGCCGGCGAGGGGCTCCGGG
AGGTGCCCGGGCTGGCGGAGCTGTGCCGGTGGGCGCGGGAGCGCGGGCTGAAGCGGGCGGCAGTCACCAACGCGCCGCGC
GCCAACGCCGAGCTCATGATCGGGATCCTCGGCCTGGCCGACTTCTTCCAGCTCGTCGTCGCCGGCGAGGACTGTGGCGA
GGGACGCTCCAAGCCCTGCCCCGACCCATACCTCCGCGCGCTCGCCCTGCTCGGCGCGTCGGCGGAGCGGTCTCTGGTGT
TCGAGGACTCCGTCGTCGGCGTGCAGGCCGGCGTGGCCGCGGGGATGCCGGTCGTGGCTATCGCGAGTGAGAGCCGGGAG
GCCAAGGTCGTCGCCGCCGGCGCGTCCATGGTCGTCAGGGACTACCGCGACGCCAAGCTCTGGGCCGCGTTGGACGCCGC
CGCCGGAGCTCCCAAGATAGATTCAGAGCTGAGCCTGAGCGCGGTG-------GAGCCTCCTGTTTCCGTTCCCGTGGAG
AATTGTTGAGCTAGAATTCCATTTCCTCTTTCCCTGCC--ATAGAAGTGCAGAATCCAGATTCCAAATTCTGTTCAGAAC
CAGAGAAAC--AAATGAAAGTAAACCGTGGTTCAAATTGAGATTTTCGTACAACCAAATCAAGGATTTCTTACAATTTTC
ACTCAATCACTCAACCAAATCCGCCGTCAACGCATGAATAGCCGCGCGCTGCTGGCAGAGGAAGAAGTCGGCTGATCGGA
CATCGACGAGGTGGCGGCCGACACGTCTGCACCGACCGCCATTATCGAGGAAAAGTAGAACACGGGAGGCCGCGCTACTT
GGGGTCCTATGAAGGCCACCGCCGGCGTACACAGCCGGTGTCTTGCCCTCTCACCGGCTTCCATTGTCCCATTACCAAAA
AACCAACCTTGGTGTGCAGCGTAGGGACCCTTCCCCTCCCAGCCGAGCCCCGCATCTCTGGAGCCAAGCCACCCTTGCCG
CCTTGCGCTCTCGTGAGTCGCCAGGCTCGCATGCGGGAGGTCGCCGTTGTGCTGCAGCACCACCGCTGGATCAGGGACCA
GCCCGAGCACCCATCTAGGTCTCCCTACGTAGGAACGCGGTCGAGCATCCGGCGCGCAGGAACTCAAAGTCGTTGCTCAC
CTTGCAGTTGTGCCCTCCTGCCCCAGTCGCATACGTCGGCGTCATCGATTCTAAACAACGGCTCTCCATGAGGAATTTAA
GAGGAAGGGGATAGAACTGACATGTGGGCCCCACATGTTAACGGTCAAAGTAACGGTGCTGACTTTTTTAGTACTGACAA
GTAGGCCCAGTCTGGCATAATCACGTTTAAAACGAATTTGCTGCTGCGGGGGACAGTTGGCGCTCGTACGGCGAGCCGGG
CGACGGGGGACAGGCCAAGTGGCGACGCGGCGGGCAGCACTGGTGTCGATTTTGGCTGAAATCGGCTGGCGGCAGAGTTG
GGCGAGCGGCAGGCGGTCGCGCGGAAGCCGAATGAAGGCACTTGGGCGGTTGG
>chr7D_399
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------------------------------------------------------------------------------GG
CTAATGATCCCATTACGGTAATCCTAAACTGTAAATTCTAACACCAAACAACTAATTAGATTCATTGCAAAGTTACCCAT
TTTTAATGATCCAAGGGATTGTACAGCACAATGTTATGCTAGTACGGAGCACATTTTTATACTTTGAGCTTTTAGTGTGA
TACACTTTTGTTT--TCTTTCTTGCTTGATTTCTAGTACCAGTGAAGATTGCTGTTAGAGAACCAAACAAGTAATTTCCG
TCTCGGTGACCCGAGATTGTTGCGTTGTTGATGGCACCAATGGAAATCCCAAAA-TTGTTGGGCTTATTGATGACCACGA
CCCTCTTAACCTTGA-------GATATCTCTGTCTGTAAGTTGTATGAAACTTTGAAACTCATCTTTCTTAATCTGAAAA
AAAAAGCATAACGTTGGTT--------GTTGCAATGTGAACTGCTCC-TTTTCTGAAAGGTCAAAAGCTGGGACTGGTGA
GATGATGATGATGATGATGATGATGGACTGCCACCAACTGCACCGATAAACAAACCTCATGAGCAGAGACCGGTCAGCTC
AGACTC----TCACCAACCAACTTTCTCTCATTGTCAATATAATCATAGCCATCAAAGGTATCCATCCAATCTGCAGATC
AGCAGAGCATCCTCAAGAACACAGCAGCCCCATGGA-----------------------------------TCCAAAGAT
GTGATTTTTCTTTTCTTTCTGGTTCTCAGTA----ATCTCTGAGTTCCTCGTCTGTTTTTCTCACTCTGAAATCTGAATC
ATGTGTGCGTTCTGCAATCTGCAGCGGTGGGAATGGGATCTCCCGGGCGGCGCCGCTGGAGGCGCTGCTGTTCGACATCG
ACGGCACCATGTGCGTCTCCGACCCGTTCCACCACCGCGCCTTCTCGGAGCTCCTCCAGAACCTGGGCTACAACGGCGGG
GCGCCCATCACGCCGGAGTTCGGCATGGCGCACATGGCCGGCCGCAGCAACGAGCAGATCGGCCGCTTCCTCTTCCCGGA
CTGGCCGCAGGCCCGGCTCGACGCCTTCTTCGCCGAGAAGGAGGCGCTCTTCGCGCGGTACGCCGGGGAGGGGCTCCGGG
AGGTGCCCGGGCTGGCGGAGCTGTGCCGGTGGGCGCGGGAGCGCGGGCTGAAGCGGGCCGCCGTCACCAACGCGCCCCGC
GCCAACGCCGAGCTCATGATCGGGATCCTCGGCCTGGCCGACTTCTTCCAGCTCGTCGTCGCCGGCGAGGACTGCGGCGA
GGGCCGTTCCAAGCCCTGCCCCGACCCCTACCTCCGCGCGCTTGACCTGCTCGGCGCGTCGGCGGAGCGGTCTCTGGTGT
TCGAGGACTCCGTCGTCGGCGTGCAGGCCGGCGTGGCCGCGGGGATGCCCGTCGTGGCTGTCGCGAGCGAGAGCCGGGAG
GCCAAGGTCGTCGCCGCCGGCGCGTCCATGGTCGTCAGGGACTACCGCGACGCCGAGCTCTGGGCCGCGTTGGAGGCTGC
TGCCGGAGCTCCCAAGATTGATTCAGAGCCGAGCGCGGTGGACGCCAAGCTCTGAGCCTCTTGTTTCCGTT-----GGAG
AATTGAGTAGCTGGAATCCCGTTTCCTTTTCCTTGTCGTTATACTAGTGCAGAATCCAGATTCCAAATTCAGTTCAGAAC
CAGAG--AAAGAAATGAAAGTAAACCGTGGTTCAAATTGAGATTTTCGTACAACCAAATCAAGCATTTCTTACAATTTTC
ATTCAATCA-----------------------------------------------------------------------
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>chr4A_571
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-------------------TCTTTCTTGATTTCTACCGGTGGCAGCGATTGCTGTTAGAGAACCAAACAAGTAATTTCCG
TCTCGGTGACCCGAGATTGTCGCGTTGTTGATGGCACCAATGCAAATTCCAAAT-TTGTTGGGCTTATTGCTGACCACGG
CCCTCTTAACCTTGA-------GAGATCTCTCTCTG-AAGTTGTATGAAACATTGAAACTCATCTTTCTTAATCTGA---
-AAAAGCATAACGTTGGTG--------GTTGCAATGTGAACTGCTCCGTTTTCTGAAAGGTCAAAAGCTGGGATTGGTGA
GATGATGATGATG------------GATTGCCACCAACCGCACTGCTAAACAAACCACACGAGCAGAGGCAGGTCAGCTC
AGACCTTTCTTCACCAACCAACTTTCTCTCATTGCCAATAAAAACACAGCCATCAAAAGTATCCATCCTATCTGCAGATC
AGCAGAGCATCCTCAAGAACACAACATCCCCCATGGAAAGGTAATCTCTGAGTTCTTCTCTAGTAAGCAGGTCCAAAGAT
GTGATTTCTCTTTTCTTTCTGGTTCTCAGTA----ATCTCCGAGTTCTTCCTCTGTTTTTCTCTCTG---AATCTGAATC
ATGTGTGCGTTCTGCA----GCCGCGGCGGGAATGGGATCTGCCGGGCGGCGCCGCTGGAGGCGCTGCTGTTCGACATCG
ACGGCACCATGTGCGTCTCCGACCCCTTCCACCACCGCGCCTTCTCGGAGCTCCTCCAGAACCTGGGCTACGACGGCGGC
GCGCCCATCACGCCGGAGTTCGGGATGGCGCACATGGCCGGCCGCAGCAACGAGCAGATCGGCCGCTTCCTCTTCCCGGA
CTGGCCGCAGGCGCGGCTCGACGCCTTCTTCGCCGAGAAGGAGGCCCTCTTCGCGCGGTACGCCGGCGAGGGGCTCCGGG
AGGTGCCCGGGCTGGCGGAGCTGTGCCGGTGGGCGCGGGAGCGCGGGCTGAAGCGGGCGGCAGTCACCAACGCGCCCCGC
GCCAACGCCGAGCTCATGATCGGGATCCTCGGGCTGGCCGACTTCTTCCAGCTCGTCGTCGCCGGCGAGGACTGCGGGGA
GGGCCGCTCCAAGCCCTGCCCCGACCCCTACCTCCGCGCGCTCGCCCTGCTCGGCGCGTCGGCGGAGCGGTCTCTGGTGT
TCGAGGACTCTGTCGTGGGCGTCCAGGCCGGCGTGGCCGCGGGGATGCCGGTCGTGGCCGTCGCGAGTGAGAGCCGGGAG
GCCAAGGTCGTCGCCGCCGGCGCGTCCATGGTTGTCAGGGACTACCGCGACGCCAAGCTCTGGGCCGCGCTGGAGGCCGC
CGCCGGAGCTCCCGAGATTGATTCAGAGGTCAACGCGGTGGACGCCAAGCTCTGAGCCTGTTGCTTCCGTTCCCGTGGAG
AATTGAGTGGCTGGAATCCCATTTCCTTTTTCCTTGTC--ATACTAGTACAGAATCCAGATTCCAAATTCAGTTTAGATC
CAGAGAAAAAAAAGTGAATATATATTGTGGTTCAAATGAGATTTTTCGTATAAACAAATCAAGCATTTCTTACAATGTTC
A-------------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
S--------SS----S------------S-S-SSSS---S----S----------------S------SS----------
---------S-S---S-------S----------------------S------S--S------S----------------
-------------SS---------------------------S--------S-----S----S----S--S---S-S---
------------S---------S-----------S-----S-S-----------S--------------S-S--------
---------------SSSSSSS--------S-S----------S------------------------------------
--S-SSSSSS-SSSSS--SSSSSSSSS-----------------------S--------------S--------------
--------------------------------------------S-S-------------SSS-----------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------S----------SSSS--------------------S-----------------S------
--S----------------------------------------------S------------------------------
-------S-----------------------------S---------------------SS-------------------
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---------------S----S-----------------------------------------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------S-----
---S-----------------------S----------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------S-----
------------------S---------------SS-SSS-SS-SS--------------S-------------------
-----SSS----S----S---------S-----S---------SS-------------------------S---------
--------S------------------------------------------------------S----------------
-S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_235
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-------------------------------------------------------GTCCAAAGGTGTCGCTACCA-----
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>reverse_2273
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--------------------------------CGACCGCCATTATCGAGGAA----------------------------
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