>input_sequence_66312
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-----------------------------------------------------------ATGGCGCGCCTCCTCGTTCTC
GCCGTCACGGCCACGGTTCTCATGGTGGGAAAGAGC-------------CGGCCATGCATGGCTCAGACATCTACCATAC
ACGACTGAATTTTTGTCTTGTCAAACATTTCATCGGTGCGTGTTTTTGG-CTCT-------ACAGGCTCAATCCGGGCAG
CCGGCGTCTGCTGCGCGGACGTCGCCGGCGGAGGCCTTCTGGCGCGCCGCCCTGCCCGACGCCACCATGCCGGACGCCAT
CCTCGAGCTCCTGCCCCAGGGTGATCACCACGCATCAACGGAACAGGGCGCGTA--------------------------
----------------------------------CATGAATGCAGAGACCGACACACCGGAAGGCGCGGTCGAGGC----
--CGTGGAGGACAAGGACCCGCCGCCGCCCATGAACTTCAACTACGACTACGACGACGCCTTGCCCCGGAGCGAAGCCAC
CAGCGCCCCCTCCCCCGACGTCCTACTAAACCGCGCTGCCGTCGT------------CACGCCGTCGTCGACGGTGTTCT
TCCTCGAGGACGCGGTGCGCGTCGGGGAGAGCCTGCCCTTCCACAGGATCCATCGGGCCACCGCCGCCGCCGAGGCGTCG
GCAGAGCAGCCGCTGGAGCTGTACACCGTCCGCTCCGTGAGGGCGGTCGAGGGGTCCAGTTTCGTCCTGTGCCGGGGAGA
AGCCGGCGAAGGGGCCGTGTACGGGTGCCGCGCCACCGGCCCGGCGAGGGCCTACGTCCTGGCCCTGGCCGGCGAGCGCG
GGGACGCGGCGATGACCGCGGTTGCCGTG---------------TCCCGGTGGGACCCGGAGCACGCCGCCTTCCGGCTC
CTCGGCGTGAAGCCCGGCGGCGCGGCGGTCTGCCACGCCGTGCCGGACGCGCAGGTCCTGCCGGCCATGAACGGGAAGAG
TCCCGCCGCCAACTAA----------------------------------------------------------------
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>chr5D_1_TraesCS5D01G265200
AACCGGCGCCCGCTGTTCTAATGTAGGTGTCAGAGTGGGTTTATTCGTCCGTCATCTCTGTATAATGCCGGCAGGCGGAC
AAACGGGCAGCCGGTTTGGATGTGGTAGATAGTCGTCCCGTTCGGTCAAATCTCTCCGGCATTGAACAGACACGGAGACC
GGGACGCGGAGCGGGCGGCACTTTCGGCCAGCACACCGTTCAATAGCGGCTCCAGTGAACGGTTGTGTCCGCTCTAGTCT
GTCATGAATGCGGCGCGGGGCGGAGGTACATTCGTGAGAGAGAGGGTGTGGGAGAGGTTTTTGGATGGATGGGAATGTCG
GACACATACGTGATGACGGTCCAGACGCCGGAAAGCTCCCTCTGGTTTGCATTGATGGGGTCCATATTTGATGACAAACT
GTGTATGGACAGCTCGGTCTGGACGTTTGCGGGTGTTTTGAGTGTCCGCATTGGAGATACACTAACCTCTTGTGGTTACC
TGTGATTTCCATCCGGACGATATGACATCATCCGGAAGTTTCAGTTCGTAACCGTATCAGTACTGATTCTTTTGATCACT
GCATTTTGCTGAAAAGAAGTTTTTGCACCGTCGAGCGTTGCACATGACATCCTCACGGCAACCGTCGTCACTGAAGATTA
TATTCCGATCGTCCC-GGCCATCGTCGGGTCACTCGGGTGGCGCGCGGTGCCGTCCACCCGATGAGTAGGTCATCATC--
TCGTTTCTTTCCCCAGACCAGACCGGGTGGTGAAGTGCAGAACGCAGAGATCGGAGGCGT----------------CTCC
CGCATGCAACAATCGCCGCCGAGATTATATTCCCAGCTCCGGACGCTTTCCGTTCCACGTCGCCCTCGCCACTCCCGGCG
TACGCGCATGGCAGCCTCTATAAATTCGGCACGATTTCTCTTGGTTTCCACACAAGGAGCAGCAAAGCTTCCTCAAGGTC
GTGTGGGTTACTGGGTTTAACTAGCTTGGCTCGGCCCCTTCCTCCGCGCAACTCCGACGATGGCGCGCCTCCTCGTTCTC
GCCGTCACGGCCACGGTTCTCATGGTGGGAAAGAGC-------------CGGCCATGCATGGCTCAGACATCTACCATAC
ACGACTGAATTTTTGTCTTGTCAAACATTTCATCGGTGCGTGTTTTTGG-CTCT-------ACAGGCTCAATCCGGGCAG
CCGGCGTCTGCTGCGCGGACGTCGCCGGCGGAGGCCTTCTGGCGCGCCGCCCTGCCCGACGCCACCATGCCGGACGCCAT
CCTCGAGCTCCTGCCCCAGGGTGATCACCACGCATCAACGGAACAGGGCGCGTA--------------------------
----------------------------------CATGAATGCAGAGACCGACACACCGGAAGGCGCGGTCGAGGC----
--CGTGGAGGACAAGGACCCGCCGCCGCCCATGAACTTCAACTACGACTACGACGACGCCTTGCCCCGGAGCGAAGCCAC
CAGCGCCCCCTCCCCCGACGTCCTACTAAACCGCGCTGCCGTCGT------------CACGCCGTCGTCGACGGTGTTCT
TCCTCGAGGACGCGGTGCGCGTCGGGGAGAGCCTGCCCTTCCACAGGATCCATCGGGCCACCGCCGCCGCCGAGGCGTCG
GCAGAGCAGCCGCTGGAGCTGTACACCGTCCGCTCCGTGAGGGCGGTCGAGGGGTCCAGTTTCGTCCTGTGCCGGGGAGA
AGCCGGCGAAGGGGCCGTGTACGGGTGCCGCGCCACCGGCCCGGCGAGGGCCTACGTCCTGGCCCTGGCCGGCGAGCGCG
GGGACGCGGCGATGACCGCGGTTGCCGTG---------------TCCCGGTGGGACCCGGAGCACGCCGCCTTCCGGCTC
CTCGGCGTGAAGCCCGGCGGCGCGGCGGTCTGCCACGCCGTGCCGGACGCGCAGGTCCTGCCGGCCATGAACGGGAAGAG
TCCCGCCGCCAACTAAGTGGCCCCTCGTGTCTGTCGTGTCCGAATCTGTATG-----------ATGGTGAACTCGTGTCT
ATGGGTATAGCTGTTGTATTATCTGTTCCTTCCACTTCCACTGTATGTTGCTAAGCACTCTATAGAGTGATGTATGACTG
TTAAAAATAAAGGATGAATGTTTGAATTTGTTTACAAGATCAATTGTCTCGATTTCGAATTATTTGTGAATTGTCGTGAA
AGAGAACTCTTTTTTTTTTACCTTGGAACTCTTCTTTTTTACCTGTCTGCTCCAGCTTTATGCTCGGCTGATGACCCGCA
AGCTGAGGTCATTCCCACTAGATGCATTCAAAGCCGTTCGATCTTCACTGGAGACCATCGGCACCATACAGTTTGGTGCT
ATTGCCTCCGCAAATGACACATCCCTCTGTTAGAGAGAGCTAGCGAGAGCGAGCGCCCCCTCCTCCCTCCCCGCCGTGCG
CTACTCCGGCGCCGGCGTCCACCTTTCCGCCGCTAGCCGCTCCGGCTACGGCGGCCACCTCTCTCGCTGCCTGCCGCTCC
GGCATCGGCGGCCACCCGTCCTCTGCGCTTGTTGGTGTCGCTCCGTCGAGGTCGCCACATCTGCGTGCTATGGCGGCCAG
TCCGTGCTCCGTCTCCTCCTCATGCCATGGGGAGCGCCCCGTGGTCTCCGGCCTCGGCCTCTCGTCGGCGTCCGAGAGCT
CGGCCGCGGTGGAGGCCCTCTTGGCGGCGTCTTCCCTGCGCATCGTGCGTTGGCAGGAGGCCCCGGTCTCGAAGCTGACC
CTCTGGAAGCGTCGCAGGGAGGCCGGGCAGCCAGAGGTGGCCCCGCGCCGTGCCTCGTCGGGCCGCAGAGAGGTCGCGCT
CCGGCGTGAGGCCGTGGCCAAGGTGGCTAGGAGGACGGTGGTTCCCGGGGGTGGAGATGGTCAGGGTGTTGGGGAACGTA
GCAGAAATTCAAAATTTTCTACGCATCACCAAGATCAATCTATGGAGTAATCTAGCAACGAGGGGAA
>chr5A_368
TGGATCGAT-----------------------------------------------------------------------
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---------------------------------------------------------GGGTCCACATTTGATGACAAACT
ATGTACAGACAGCTTGGTCTGGACATTTGCGGGCGTTTTGAGTGTTCGCGTTGGAGATACACTAACCCCTTGTGGTTACC
TGTGATTTCCAACCAGACAGTAG----TCATCCAGAAGTTTCAGTTCATAATCGTAGGAGTAGTGATTC-TTTCATCACT
ACGTTTTGCTGAAAAGAAGTTTCTGCACCGTCGAGCGTTCCACATGACATCCTCACGGCAACCGTCGTCACTGAAGATTA
TATTCCGATAGTCCCCGACCATCGTCGGGTCACTCGGGTGGCGCACAGTGTCGTCCACCCGATGAGTAGGTCATCGTCGA
TCGTTTCTTTCCCCAGACTAGAAGGGGCGGTGAAGTGCAGAATGCAGAGATCGGAGGCGTCTCGTGTGGCTCTCTGCTCC
CGGATGCAACAATCGCCGCCGAGATTATATTCTCAGCTCCCGACGATTTCCGTTTCACGTCGCCGTCGCCACCC------
-------------CCCTCTATAAATTCGGCACGATCTCTCTTGGTTTCCACACAAGGAGCACCAAGGCTTCCTCAAGGTC
GTGTGGGTC--------TAACTAGCTTGGCTCGGCCCCTACCTCCGTGCAGCTCCGACGATGGCGCGCCTCCTCGTTCTC
GCCGTCACGGCCACGGTTCTCATGGTGCGAAAGAGCTAGCTAGTAGAGCCGGCCATGCATGGCTCAGACATCTACCATAC
ACGACTGAA-TTTTGTCTTGTCAAACATTTCATCGGTGCGTTTTCTTGTCTCTTGAATCCCCCAGGCTCGGTCCGGGCAG
CCGGCGTCCGCTGCGTGGACGTTGCCGGCGGAAGCCTTCTGGCGCGCCACCCTGCCCGACGCCCCCATGCCAGACGCCAT
CCTCGAGCTCCAGCCCCAGTTTGATCACCACACATCAACGGAACAGGGCGCATA--------------------------
----------------------------------CATGAATGCAGAGACTGGCACTCCGGAAGGCGCAGTCGCCGAGGAC
AGCGTGGAGGACAACGACCCGCCGCGGCCCATGAACTTCAACTACGGCTACAACAACGCCTTGCCCCGGAGCGAAGCCAC
CAGCGCCCCCTCCCCCAACGTCCTACTGAACCGCGCCGCCGTCGTCCGCAACGTCGCCACGCCGTCGTCGGCGGTGTTCT
TCCTCGAGGACGCG------------------------------------------------------------------
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>chr5B_377
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--------------------------------------------------------GGGGTCCACATTTGATGACAAACT
ATGTATAGACAACTTGGT-TGGACGTTTGCGGGTGTTTTGAATGTCCGCGGTGGAGATACACCAACCCCTTGTTGTTACC
TGTGTTTTGCAACCAGACGATATGACATCATCCGGAAGTTTCAGTTCGTAACCGTAGCAGTAGTGATTC-TTTGATCACT
GCATTTTGC---------------------------------------------------ACCGTCGTCACTGAAGATTA
TATTCCGATCGTG-CCGGCCACCGTCGGGTCACTCGGGTGGCGCGACGTGCCGTGGAGACGATGAGTAGGTCATCGTCGA
TCGTTTCTTTCCACAGACCAGACCGGGTGGTGAAGTGCAGAATGCAGAGATCGGAGGCGTCTC----------------C
CGCATGCAACAATCGCCGCCGAGATTATATTCCCAGCTCTGGACGCTTTCCGTTTCACGTCGCCGTCGCCACTCCCGGCT
TACGCGCGTGGCACCCTCTATAAATTCGGCACGATTTCTCTTGGTTTCCACACAAGGAGCAGCAAAGCTTCCTCAAGGTC
GTGTGGGTTACTGGGTTTAACTAGCTTGGCTCGGCCGCTTCCTCCGCGCAGCTCCGACGATGGCGCGCCTCCTCGTTCTC
GCCGTCACGGCCACGGTTCTCATGGTGCGAAAGAGCTAGCTAGTAGAGCCGGCCATGCATGGCACAGATACCTATCATAC
ACGACTGAA-TTTTGTCTTGTCAAACATTTCATCGGTGCGTTTTTTTTGTCTCT-------CCAGGCTCAATCCGGGCAG
CCGGCGTCTGCTGCGCG-----------------------------CCGCCCTGCCCGACGCCCCCATGCCGGACGCCAT
CCTCGAGCTCCTGCCCCAGTTTGATCACCACGCATCAACGGAACAGGGTACTGATTTTGTGGCCATCTTCCGATGGAAGG
CCGTCTCTCTCTAGCTCACCCACGTGCCTTGCTGCATGAATGCAGAGAAAGACACTCCGGAAGGCGCGGTCGAGGA----
--CGTGGAGGACAAGGACCCGCCGCCGCCCATGAACTTCAACTACGACTACGATGACGCCTTGCCCCGGAGCGAAACCAC
CAGCGCCCCCTCCCCCGACGTCCTACTGAACCGCGCCGCCGTCGTCCGCAACGTCGCCACGCCGTCGTCGGCGGTGTTCT
TCCTCGAGGACGCGGTGCGCGTCCGGGAGAGCCTGCCCTTCCACAGGATCCATCGGGCCACCGGCGCTGCCGAGGCGTCG
GCAGAACAGCCGCTGGAGCTGTACACTGTGCACTCCGTGAGGGCGGTCGAGGGGTCCAATTTCATCCTGTGCCGGGGTGA
AGCCGGCGAAGGGGCCGTGTACGGGTGCCGCGCAACCGGCCCGGCGAGGGCCTACGTCCTGGCCCTGGCCGGCGAGCGCG
GGGACGTGACGATGACCGCGGTTGCCGTGTGCCGCACCGACGCATCCCGATGGGACCCGGAGCACGCCGCCTTCCGGCTC
CTGGGCGTGAAGCCCGGCGGCGCGGCGGTCTGCCACGCGGTGCGGGACGCGCAGCTCCTGCCGGCCATGAACGGGAAGAG
CCCCGTCGCCAACTAAGTGGCCCCTCGTGTCTGTCGTGTCCGACTCTGTATGATCGTATCCATATGGTGAACCCGTGTCT
ATGGGTATAGCTGTTGTATTATCTGTTCCTTCCACTTCCACTGTATGTTGCTAAGCACTCTATGGAGTGATGTATGACTG
TTAAAAATAAAGGATGCACGTTTCAATTTCTTTACAAGATCAATTGTCTCGATTTCGAATTATTTGTGAGTTGTTGCGAA
AGAGAACTCTTCTTTTTTACCTA--------------------TGTCTGCTCCAACTTTATGCTCGGCTGATGACCCGCA
CGCTGAGGTCATTCCCACTAGATGCATTCAAAGCCGTTCGATCTTCACTGGAGACCATCTGTACCATTCAGTTTG-----
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>chr5A_1487
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----CGAGAACGCGGTGCGCGTCGGGGAAAGCCTGCCCTTCCACAGGAT-CATCGGGCCGCTGCCGCTGCCGAGGCGTCG
ACAGAAAAGCCGCTGGAGCTGTACGCCTTCCGCTCCGTGAGGGTGGTCGAGGGGTCCAGTTTCGTCGTGTGCCGGGGAGA
AGCCGGCGAAGGGGCCGTGTACGGCTGCCGCGCCACCGGCCCGGTGAGGGCCTACGTCCTGGCCCTGGATGGCAAGCGCC
GGGACGTGGCGATGACCGCGGTTGCCGTGTGCCGCACCGACGCGTCCCAGTGGGACCCGGAGCATGCCACCTTCCCGCTC
CTCGGCGTGAAGCCCGGCGGCGCGGCGGTCTGCCACGTGGTGCCGGAAGCGCAGGTCCTGCCGGCCATGAACGGGAAGAG
CCCCGCCACCAACTAAGTGGCCC-TCGTGCCTGTCGTGTCCGGCTCTCTATGATCGTATCCATATCTTGAACTCGTGTCT
ATGGGTATAGATGTTGTATTATCTTCTCCTTCCACTACCACTATATGTGGCTAAGCACTCTATAGAGTGATGTATGACTG
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---------------
S-----S-------S----------------------------------S-----------------S------------
-----------S--S-----------------------------------------S-----S------S----------
----------------------S----------------S----------------------------------------
----------------------------------------------S----------------------------S----
------------------------------------------S-------------------------------------
------------------------------------------------------S---------S--------------S
-------S-----S------------------------------------------------------------------
--------------------------------------------------S-----------------------------
---------------------------S----------------------------------------------------
---------S-------------------------------S-------------------S------------------
----------------------S---------S------------------------------S----------------
-------------------SS------------------------------S----------------------------
-------------------------------------------------S-----S-------------------S----
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---------------------------S--------S---------------------------------S---------
-------------------------------------------------------------------S------------
-----S--------------------------------------------------------------------------
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------S-------------------------------------------------------------------------
--------------------------------------S-----------------------------------------
S------------------------------------------S------------------------------------
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----------------S-S----S-----S---------------------------------------S----S-S---
-----------S------SS-SSSSSSSSSSSSSSSSSSSSSS-----------S-------------------------
S----------------------------------------------------------S-S-----S-------SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_127
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---------------------------GATAGTCGTCCCGTTCGGTC---------------------------------
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>reverse_1301
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--------------------GTGATCACCACGCATCAACG----------------------------------------
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>forward_368
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----------------------------CGGAAAGCTCCCTCTGGTTT--------------------------------
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>reverse_2404
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---GCCTCCGCAAATGACACATC---------------------------------------------------------
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