>input_sequence_66290
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------ATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCGCCGTCGCAGCTCGCGCC
CAACGGGTGGCGCGTCCTGGCCGGGTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCCTGCCCGTGTTCC
GCCACTTCTTCGCCCTCACGCCGCTCCCCAACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCGTCCCGGCGCTC
TTCACCGGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGCGCGCCCTGGCG
GTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAGCGATGCGGCCGTGGCGT
GCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTGAAGACGTACCTGTCCGAGAGCAACCTCGTCGCCGCCAAGATTAGC
CGCGCCCCGGCGTGTCTCGGTACGTATGGGTGTCACTACTGTATAGGCACATGTGGATAGATGGATGGAGTGGAGAATGT
TCTAATGTTGGATTGTTTCTGTGCGCAGGGACGGGAGCTTCCCAAGGTGCAGCGCCGCCCACGGCCACAGGGAAGAAGAG
AAAGGCGGCTGCTCCTGCTGGTG------------GTGGCGGC---GGCGGCGGCGACGTGCTTCGCTCGGAGCTGCGCG
CGAAGGAGATGGCTCTGTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGGGCAATGCCAAGAAGAGGGAG
CTTGCGGAGGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCGGAAGGCGGCGGGAAGGGAGCGGGGGCCGG
CAAGCGGCGTCGTGGCGCCGAGTGA-------------------------------------------------------
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>chr1A_1_TraesCS1A01G111200
CATCTAAATAATAATACTCAAAATTGTGTACCCACTTACTCGGCAAAACAAACTTTTTTATGGCAATTTAGATGTCGCGA
GAATAAACAAATTTAGTTAGCAAGCCCGACAAATCCTGACAAAAACAAATAAACTGGATGAATTTGCCATGCTTGCCAAC
TAAACTTGCCATCGAAAAAAAAAAATGCCATGCAAATCGTTCACGTGACATGCCTCCTGGTGAACGTTCGAGGGTTATGA
GGGTTTCCTAAAAAAATCTAACCGCACAAACACATTACCTCTGGAAAAGAAAAAAAAACCCTATACAAATCAACATTTCT
TTAAATAGGGTACTATATCCCAGCGCTTGAATGAAGATGGGAGTCACTGTAACGTTCTTGATTAAGTCCAACGCAATCTT
CTCCTGCAGTCGAATCGCTCGCTCATGATCCGTTTCCACTTTCCATAAAACAAGCC--------------AGGAAGCCCC
CACGAACGTTAAAAGTG----GCCCGCCCGTTCGTTCCTCT-------CCCCAGATCCAAACCGCCGCCACCCAGAAATT
CAAGC-------------CTCCCTCCATCGGCCAACCCCGTCCAGATTCCGGACCGCCATGTCGTCGTGGTTTCC-----
---GTCCTCCTACTACGACGAGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTATGGCTACGGCTACG
GCTACGGCGGGGGAGTCGCCGGGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGAGAGCAGGAGCAGGAGCAGGCCGAGGT
GTACATGGACAGGACGATCGGGCGGCGCTCTCTTGGCCGGCGGCTGAGGAGTTCAAGTCGACGCTGCGCACGCAGTAGTC
CCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGCACCTCGCCGGCCCCGCCCAGGCAGCGTGCG
TGCCGCCCCCTCCCGCCGCGCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGCAGGCGTTCGCC
GCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCGCCGTCGCAGCTCGCGCC
CAACGGGTGGCGCGTCCTGGCCGGGTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCCTGCCCGTGTTCC
GCCACTTCTTCGCCCTCACGCCGCTCCCCAACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCGTCCCGGCGCTC
TTCACCGGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGCGCGCCCTGGCG
GTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAGCGATGCGGCCGTGGCGT
GCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTGAAGACGTACCTGTCCGAGAGCAACCTCGTCGCCGCCAAGATTAGC
CGCGCCCCGGCGTGTCTCGGTACGTATGGGTGTCACTACTGTATAGGCACATGTGGATAGATGGATGGAGTGGAGAATGT
TCTAATGTTGGATTGTTTCTGTGCGCAGGGACGGGAGCTTCCCAAGGTGCAGCGCCGCCCACGGCCACAGGGAAGAAGAG
AAAGGCGGCTGCTCCTGCTGGTG------------GTGGCGGC---GGCGGCGGCGACGTGCTTCGCTCGGAGCTGCGCG
CGAAGGAGATGGCTCTGTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGGGCAATGCCAAGAAGAGGGAG
CTTGCGGAGGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCGGAAGGCGGCGGGAAGGGAGCGGGGGCCGG
CAAGCGGCGTCGTGGCGCCGAGTGATCACGTACGTCGTGACCAACGGTGGGCCGAGTGCACTCGGCTGCTGGGTCGAGGT
TTTTAGCAAACGTAGTTATGTTTGAGTTGGCTGCCGA-GTCGCGTTGCAACAAATTACGAACTTAGAAATTTGTGGACTT
CTGCA--AAAAAATTATTGAAATCTGCCTTGAGGTT-GAGTTGGTTGATGATTCTCACATTGGTAGCAAAAAAGTAGTTA
ACATTTTGATACGGAGGTAATATTTTCTTTCTTCAATTCAACCTGAAATGTTTCACCACATTTTAATCACCACTAGCCTA
ATTGAAGTTCGGAAATTCCCCTTCATTCCAAAATAATTGTCATATTTAAACTAAAACCACGAAGGATATACTTAGCATAG
ATGTGCATTTTTAAAGAACTATTCGATCCAGCCAGTAGCCATCTTGTCCCTAGGCTTGATAATTCAGGGGTCTGGGGACG
AAATAAGAACCCACAGCGCATCAATATAAATATATGGAAACATGTACTCTTTTTAGTCTGCATAACCTCTACGCTTTCCT
GGGGCTGCCATACCTATATTTGTTCTCTGGCACTACAAGAATTGGTCGTAAATCTACGACCATTTAAGACCAATTGGTCA
AAAGCTGTTCGAGGAGCTCTAACCATTTTGGTCAGAAATGTCGCAATTTTTTTACACGAAATGGTCGTAAAGCAGACTGC
ACTGGTCCTCGAACATGGATGCATTGATATGACTGGACGCCACATCATCAATTCCGCCTACGTGTCGTGTCATTTTTGCT
TATGTGTCACTTTTAGCAA-TTGGTTTGACCACTCACATATTTT------------------------------------
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----------------AGCAAAAAGTGGCTCCCGTGGGACTCGAACCGGCAACGTCTAAGTCTTGTTTAGAGAAGCAAAC
AACCAGGCTACCACCACTTTGTTGATTGGGTAGCGCGCGCGGCCTACTTAAGGCTTCTCTTCGACTGGGCTTGGGCCTTG
TTCGGACGAGGCCACCTCCTATTTTTTTTTCTTTTAACATTT
>chr1D_353
GAAGATGA------------------------------------------------------------------------
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-----------------------------------------AGTCACTGTAACGTTCTTGATAAAGTCCAACGCAATCTT
CTGCTGCAGTCGAATCGCTCGCTCATGATCCGTTTCCACTTTCCATAAAACAAGCCAACCTTCCACCGGAAGGAAGCCCC
CACGAACGTTAAAAGTG----GCCCGCCCGTTCCTTCCTCTCCCCACACCCCAGATCCAAACCGCCGCCACCCAGAAATT
CAAGCACCCCTCCCACGCCTCCCTCCATCGGCCAACCCCGTCCAGGTTCCGGACCGCCATGTCGTCGTGGTTTCC-----
---GTCCTCCTACTACGACGAGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTAT------GGCTACG
GCTACGGCGGGGGAGTCGCCGGGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGGGAGCAGGAGCAGGAGCAGGCCGAGGT
GTACATGGACAGGACGATCGGGCGGCGCTCTCTTGGCCGGCGGCCGAGGAGTTCAAGTCGACGCTGCGCACGCAGGAGTC
CCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGCACCTCGCCGGCCCCGCCCAGGCAGTGTGCG
CGCCGCCCCCTCCCGCCGCTCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGCAGGCGTTCGCC
GCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCCCCGTCGCAGCTCGCGCC
CAACGGGTGGCGCGTCCTGGCCGGCTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCTTGCCGGTGTTCC
GCCACTTCTTCGCCCTCACGCCGCTCCCCAACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCGTCCCGTCGCTC
TTCACCGGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGCGCGCCCTGGAA
GTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAACGATGCGGCCGTGGCGT
GCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTTAAGACCTACCTCTCCGAGAGCAACCTCGTCGCCGCCAAGATTAGC
CGCGCCCCGGCGTGTGTCGGTACGTATGCGTGTCATTACTG--TAGGCACATGTGGATAGATGGATGGAGTGGAGAATGT
TT-AACGTTGGATTGTTTCTGTGCGCAGGGACGGGAGCTTCCCAAGGCGCAGCGCCACCGACGGCCTCAGGGAAGAAGAG
AAAGGTGGCTGCTCCTGCTGGTGCTGCTGTTGCTGGCGGCGGCGGCGGCGTCGGCGACGTGCTTCGTTCGGAGCTGCGCG
CGAAGGAGATGGCCCTCTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGGGCGATGCCAAGAAGAGGGAG
CTTGCCGAGGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCGGAAGGCGGCGGGAAGGGCGCGGGGGCCGG
CAAGCGGCGTCGTGGCGCCCAGTGATCACGTACGTCGTGACCAACGGTGGGCCGAGTGCAGTCGGCTGCTGGGTCGAGGT
TTTTAGCAGACGTAGTTATGTTTGAGTTGGCTGCTGAGGTCGCGTTGCAACAAATTACGAACTTAGAAATTTGTGGAGTT
CTGCAAGAAAAAAATGTTGAAATCTGC-------------TTGGTTGATGATTCTCACGTTGTTAGCAAAAGT-------
ACATTTTGATACGTAGGTAATATGTATTTTCTTCAT----ACCCGAAATGTTTCACCACATTTTAATCACCACTAGCCTA
ATTGAAGCTCAGAAATTCCCCTTCATTCCAAAATACTTGTCATACTTAAACTAAAACCACG-------------------
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>chr1B_372
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---------------------------------------------------ACGTTCTTGATCAAGTCCAACGCAATCTT
CTCCTGCAGTCTAATCGCTCGCTCATGATCCGTTTCCACTTTCCATAAAACAAGCCAATCTTCCACCGGAAGGAAGCCCT
CACGAACGTTAAAAGTGAGTGGCCCGCCCGTTCCTTCCTCT-------CCCCAGATCCAAACCGCCGCCACCCAGAAATT
CAAGCACCCCTCCCACGTCTCCCTCCATCGGCCAACCCCATCCAGATTCCGGACCGCCATGTCGTCGTGGTTTCAGACTT
TCAGTCCTCCTACTACGACGGGGATGACGTCAAGCCGGCGGTGACGACGCATTGGCGCCGTGACTAT------GGCTATG
GCTACGGCGGGGGAGCTGCCGCGGAGGACGTCAAGCCGCGTCCGGGTCCTCCGGGAGCAGGAGCAGGAGCAGGCCGAGGT
GTACATGGACAGGACGATCGGGCGGCGTTCTCTTGGCCGGCGGCCGAGGAGTTCAAGTCGACGCTGCGCACGCAGGAGTC
CCTCGCCGGCCTCCGCACCAGGTACGGCATCCCGGAGGGGTTCGGCCTGTACCTCGCCGGCCCCGCCCAGGCAGCGTGCG
CGCCGCCCCCTCCCGCCGCTCGCGGAGCCCGAGGCGGCGCCGCGGCGGTGCCGATCTGCGTGCACACGCAGGCGTTCGTC
GCGGGCATGCGCCTGCCGCTGCACCCCTTCTTCAGCGACGCGCTCGCGCACTTCGGCATCGCGCCGTCGCAGCTCGCGCC
CAACGGGTGGCGCGTCCTGGCCGGCTTCGCGGTGCTCTGCCACTTCCGCGGCGCCGGCGCGCCCTCCCTGCCGGTGTTCC
GCCACTTCTTCGCCCTCACGCCGCTCCCCCACGGGAAGGGCTGGTTCTCCTTCCGCTCCAGGGAGAGCGTCCCAGCGCTC
TTCACCCGGCTCCCCACGTCCGTCAAGGGGTGGAAGGAGGAGTTCCTGCTCGTGTCGCCTCCGCCGGGCGCGCCGTGGCG
GTGCCCCGTGCGGTGGGGCTCCCCGACGAAGGAGGCGACGAGCGACCCCATGCTCACCGGCAGCGATGCGGCCGTGGCGC
GCCGGCTGTCGCAGGGGCAGGGCGTCGTCGACCTTAAGACGTACCTGTCCGAGAGCAACCTCGTCGCCGCCAAGATTAGC
CGCGCTCCGGCGTGTCTCGGTACGTATGCGTGTCATTACTG--TAGGCACATGTGGATAGATGGATGGGGTGGAGAATGT
TTTAACGTTGGATTGTTTGTGTGCGCAGGGACGGGAGCTTCCCAAGGTGCAGCGCCGCCCACGGCCACAGGGAAGAAGAG
AAAGGTGGCTGCTCCTGCTGGTGCTACTGCTGCTGGTGGCGGC---GGGGGCGGCGACGTGCTTCGTTCGGAGCTGCGCG
CGAAGGAGATGGCTCTCTCCAAGGCCAAGGGCGAGATCAGCCAGCTGAAGAAGGAGCTGAGCGATGCCAAGAAGAGGGAG
CTCGCCGACGCGCAGCAGGCACTGGCCTACGCGGCGCAGGTGCTCAAGCCCGAAGGCAGCGGCAAGGGCGCTGGGGCCGG
CAAGCGGCGGCGTGGCGCCCAGTGATCACGTACGTCGTGACTCGTGACCCAGTGATCGC-------------GTCGATGT
TTTTAGCAAACTTAGTTCTATGTTTG-TGTCTGGTGA-GTCGCGTTGCAACCAATGACGTGCTTAGAAATATGTGGATTT
CTGCA--AATC-ATTATTGAAATCTGGCTTGAGGTTTGAGTTGGTTGATGATTCTCGCCTTGTTAGCAAAAGT-------
AGT-----------------TACGTTTTTTCTTCAATTCAACCCGAAATGTTTCACCGCATTTTAGTCACCAGTAGCCTA
ATTAAAGTTCGGAAATTC--------------------------------------------------------------
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>chr2B_2587
AACAG---------------------------------------------------------------------------
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----------------GGATGCATTGATATGACTGGACGCCACATCATCAATTCCTCCTACGTGTCATGTCATTTTTGCT
TATGTGTCACTTCTAGCAATTTGGTTTGACCACTCACATATTTACTAAAATGATCTGTGGACCTACCACTGACATGCGGG
GCTAACTAACACAATTTCAATGACATGTGGGACCCGTTGTCCACTCACATATTAATTTGTTGAGCACTGACATGTGAGGC
CTACTACTGACAAGCAGGACCAACTAATACAATAAGTATGACCTGTGGGACCGTCCTCCCCTAGAATAAAGGACCTGCAA
ATTGACGAATAAACGCAGCAAAAAATGGCTCCCGTGGGACTCGAACTGACAACGTCTCAGTCTAGTTTAGAGAAGCAAAT
CACCAGGCTACCACCACGTTGGAGATTGGGTAGCGCGCATGGCCTACTTAAGGCTTCTCTTCGACTAGGCCTGGGCCTTG
TTCGGACGAGGCCACCTCCTA-TTTTTTTTCTTTTAACATTT
>SNPs
S-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S-----------------
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-------------------------------------------------------------------SSSSSS-------
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--------------------------------------------S------------------------------S----
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S------------------S------------------------------------------------------------
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------------------------S-----------------------------------------------S-------
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----------------------------------S---------------------------------------------
----------------------------S------S-----SS-------------------------------------
-S---S--------------------------------------------------------------------------
-----S------------------------------------------------------------S-------------
----------------S---------------------------------------------S-----------------
-----S--------------------------------------------------------------S-----------
-------------------S----------------------------------------S-------------------
----------------------------------S------------------------------------------S--
----------------------------------------------------------S---S--------SSSSSSSSS
-------------S---------S--S----------------S------------------------------------
-----------------------------------S--------S----------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS---------------------------------------S----------S-------------
------------S------------------------------S------------------------------------
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------------------------S---------------------S-S--------S-----S---------------S
S----------------S---SS---------------SS--------------------------S---S---------
---------------------S--------------------
>forward_224
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--------------------------------------------GTGACATGCCTCCTGGTGAA----------------
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>reverse_2035
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----------------------------------CGAGTCGCGTTGCAACAAAT--------------------------
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