>input_sequence_66276
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-------------------------------------------------------GAGCATTCCGATCCAGCGCCGCCGC
CGCCAACACCACACCTCGAGAGCCCTCG------TCGCCGGAGAAGTAGCA-GCAAGCAAGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCCGCTCCGTGAAGGCCGGGCTCCAGTTCCCGGTCGGCCGCATCGGGCGCTACCTCAAG
AAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGT
ACGCACAGATGTCCTCCCTCCTCGAGGCTGTTCTGCTCTGTTCTTGCACTGTTCGACGGATGACTGACGGATCTTTCCTG
TCCCCGAGCATCA----GTTCTGCTCTGTTCTTCTTGTGTTCG-ACGGAAAACTTACAGATTTCGTTT----TTGAA-TC
TCAGGTCCTGGAGCTTGCCGGCAACGCGGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCTGCTGCTCGCCG
TCCGCAACGACCAGGAGCTCGGCAGGCTGCTTGCCGGCGTCACCATCGCCCACGGCGGCGTCATCCCCAACATCAACTCC
CGTGCTGCTGCCCAAGAAGTCCCCCGCCGCGGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGACCTCCACCAAGTCCC
CCAAGAAGAAGGTCGCCGCCA---AGGAGTAGAAT---TCCCCATAGCATAGCCATTGTTGCTTAGATCCATTTCTCATG
GAC-AAGATGAGCAGTCTTTTGGTTAGTTAGATGAGTAGTGGTTCTGCCCTTAGATTCGCTGAGAAAGGGTGGCATTATG
TCTGTGATTTCTGTAGGAATGGCTAAATATGCAATCGCTCAGATCTTAATTCTCTTGTTCTATCTGTGGGTGAAATTGAT
CCTG----------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G034800
CAATGATGTCTTAGGAGCTCGGGTGTGGCAATGTAGCTTGGGGACTATGTCAAAGGATAATGCACAATCCACTCCATTTT
CATCTCACAAAGTCACATGAATCACGCTAATCGTTAAAAAGATAACAAA-------AGTAACATTAAACACAAAGTTCAA
CAAATAATAGTAACATCTCATGCGCTGTAAGAGTGAAAAAAAGACAAAGGACCAGAGTAATGAAAGTAGGCAAAAAACAA
ACAAATGAACAGACTAATGAAAATAGGCTCATTAATAACAAGGGTTAACAAAAAATCCACACACAAATGTGTCATATACA
TGTTCACCCAGCTCTTTTTAAACATACCATTGACATTTTTTAGATGCTATATATAGAAACATTTCACGCACCCAAGCAAA
TCAACTTCTTTATTACTCGCATGATTCATGATTGTTTTCCCAATGTGAAACAACTTATGACGACATTGACAATGGCCA--
CAATTGTTATCCTTACCCATCCTTAT-TTTTTCACTCCACAGACTGTACAACGCATATACCTTCCATTTCTTAAACTTCA
AGTTTCTAATCAAAATTTGCCAAATTTGAACATTTTAGTCTATGGAGTGATGAAACTGAATATGGCCAATACCCGATGCT
AAATTGTTGATCCACACATGATGAATGGGCTTACTACCAAAAA---AATGTGATTAGCTACAACAACAAAATAATGTTAT
ACATATAAGCAGATTCGTCTCGGTGAAAAATCAATTGGCTGCAAGATAAGAGTGGAAATTTTTGTACAAATGATGCACAA
AGACAATCATCAAGTGGTAAAAGAAAATCCCTGCTCTCTGATTGGCCGATTAGACCCTCACACGGATCGTGCCCCC-AAA
CTGATCTCGACCGCCCGCACCCTGCAGATCCAACGGCTGGCGCACCGCATCACGCGGATCGCTCCCCCCGCCAGCGGCGC
TCCC-TCCTCCGGATAAAACCCGCGCCCACGCCAGCGTTCCAACACACAAGCTCAGAGCATTCCGATCCAGCGCCGCCGC
CGCCAACACCACACCTCGAGAGCCCTCG------TCGCCGGAGAAGTAGCA-GCAAGCAAGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCCGCTCCGTGAAGGCCGGGCTCCAGTTCCCGGTCGGCCGCATCGGGCGCTACCTCAAG
AAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGT
ACGCACAGATGTCCTCCCTCCTCGAGGCTGTTCTGCTCTGTTCTTGCACTGTTCGACGGATGACTGACGGATCTTTCCTG
TCCCCGAGCATCA----GTTCTGCTCTGTTCTTCTTGTGTTCG-ACGGAAAACTTACAGATTTCGTTT----TTGAA-TC
TCAGGTCCTGGAGCTTGCCGGCAACGCGGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCTGCTGCTCGCCG
TCCGCAACGACCAGGAGCTCGGCAGGCTGCTTGCCGGCGTCACCATCGCCCACGGCGGCGTCATCCCCAACATCAACTCC
CGTGCTGCTGCCCAAGAAGTCCCCCGCCGCGGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGACCTCCACCAAGTCCC
CCAAGAAGAAGGTCGCCGCCA---AGGAGTAGAAT---TCCCCATAGCATAGCCATTGTTGCTTAGATCCATTTCTCATG
GAC-AAGATGAGCAGTCTTTTGGTTAGTTAGATGAGTAGTGGTTCTGCCCTTAGATTCGCTGAGAAAGGGTGGCATTATG
TCTGTGATTTCTGTAGGAATGGCTAAATATGCAATCGCTCAGATCTTAATTCTCTTGTTCTATCTGTGGGTGAAATTGAT
CCTGTTAATCCTTGCTTCCTGTGCTGTTTTATCCTAGTACTAAATTCTCACTTATATCGGCTGAAAAATCCCCCAATTCT
TTGCTCTCTGAATTATGGTGCTCAATTGCAAACACTGATTGTAAATTCCTTATGAAGATCAACACAATCATATTACTATT
GAGCTGCAGAGAAAAAATTCGCACCTCATGATCAGCTTTCTGTCAGTCAGCACCACCATCTTAGACTTGCTCAAGCATGT
ACCAACGAACCACAAAAGCCATGCCAAGACATTCCTGCAGTTAATTTCGCCTTGATCTTTCCCTCTGTAGTTGAGTTCTT
TACATGTTGTATTCACAGGCCAAACAAATTCTTCCGGTTGGAGTTGAGCCGGCCGTATGCAAACTGAAGTTTGGGGAGTC
AGGACTCAGGTGTATGTAACAAACCACAAACCAGATTTATGATTTATGAGCCACTAGCCAGATAAGGTACTAATTTAGAT
TGACCTAAAGCAGAAACAAACATTGAGGAATTAAGATAGCAACCATGCTCATGTAAGAAAACTGATATAGTGATGTTTCA
CTTCGTTCCATCAATAAAAAAATATTTTTCTGAAAGTAAAATTGGTAACCACCATGGAAATACAACAGGTACAAATCTCA
GTAAAAAA-ACTTTGAATTGAACACATTGATTCTC---------------CGCTAAATCGCTTGCAACCAAAACTAGTAC
CGAGTCCATGGAAGGTCTTGTGCTAAGGATATAGGTTTTGTGTACGCTTCTCTTGTTTTTCATGCTGTTTTCGAGGGTTT
ATATCGTTTTTTCCATTATATTTTTCTGTTTGTTACATTTTTCTTTTGCTGAATTCCATTTTATTGTTTCATTTTTTATT
TTTCCTCTGTTGTCTCTATTTATTTTTCCTATTCGTCTTCTTTCAAAGTTTTCCCTTTTTACTTTTTCGTCGACTTTCTC
TTAT-TTGTTTTTGTTTTGTCTCGGATTTTTAGTACTTTTTATAAATATATTTTTTAAAAT
>chr6D_7
------TGTCTTAGGAGCTCGGGTGTGGCAATGTAACTTGGGGACTATGTCAAAGGATAATGCACAATCTGCTCCATTTT
CATCTCACAAAGTCACATGAATCACACTAATCATTAAAAAGATAACAAAATACAAAAGTAACATTAAACACAAAGTTCAA
CAGATAATAGTAACATGTCATGC---GTAAGAGTGAAAAACAGACAAATGGCCAGAGTAATGAAAATAGGCGAAAAACAA
ACAAATGAACAGAGTAATGAAAA--GGCTCGTTAATAACAAGGGTTAACAAAAAATCCACACACAAAAGTGTCATATACA
TGTTCACACAGCTCTTTTTAAACATACCATTGACATTTTTTAGATGCC----ATAGAAACATTTCACGCACCCAAGCAAA
GAACCTTCTATATTACTCGCATGATTCATGATTGTTTTCCCAATGTGAAACAACTTGCGACGACATTGACAATGGCCATA
CAGTTCTTATCCTTACCCATCCTTATATTTTTCACTCCACAGGCTGTACAACGCATATACCTTCCATTTCTTAAACTTCA
AGTTTCTAATCAAAATTTGCCAAA-TTGAACATTTTAGTCTATGGAGTGATGAAAATGAATATGGCCAATACCCGATGCT
AAATTGTTGATCCACACATGATGAATGGGCTTACAACCAAAAATAAAATGTGATTAACTAGAACAACAAAC-AATGTTAT
ACATATAAGCAGATTCGTCTCAGTGAAAAATCAATTGGCTGCAAGATAAGAGTGGAATTTTTTGTACAAATGATGCACAA
AGACAATCATCAAGTGGTAACAAAAAATCCCTGCTCTCTGATTGGCCGATTAGACCCTCCCACGGATCGTGCCCCC-AAA
CTGATCTCCGCCGCCCGCTCCACACAGATCCAACGGCTGGCGCACCGCATCACGCGGATCGCCCCCCCCGCCAGCGACGC
TCCC-GCCTCCCAATAAAACCCCCGCCCTCGCCGCCGTCCAAACACACAAGCTCGGAGCATTCCGATCCAGACCAGCCGC
CCCCG---------CATCTCGAGTAGTTTCCAGCTCGCCGGAGAAGC----AGCAAGCAGGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGTCGGTGACCAGGTCCGTCAAGGCTGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAG
AAGGGCCGCTACGCGCAGCGCGTCGGCTCTGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGT
ACGCACAGAT--------------------------------------------------------------CTCTCCCC
TCCCCGAGCACCT----CTTCTTCTCTGTTCTTCTTGTGTTCG-ACGGATAACTGACAGATTTCGTTT----TTGAA-TC
GCAGGTGTTGGAGCTGGCCGGCAACGCTGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCTGCTGCTCGCCG
TCCGCAACGACCAGGAGCTCGGCAGGCTGCTCGCCGGCGTCACCATCGCCCACGGCGGCGTGATCCCCAACATCAACT-C
CGTGCTTCTCCCCAAGAAGTCCCCCGCCGCCGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGACCACCACCAAGTCCC
CCAAGAAGAAGGTCGCCACCA---AGGAGTAGAAT---TCCGCATAGCATAGCCATTGTTGCTTAGATCCATTTCTCATG
GAC-AAGATGAGCAGTCTTTTGGTTAGTTAGACGAGTAGTGGTTCTGTCCTTAGATTCGCTGAGCAAGGGTGACATTGTG
TCTGTGATTTCTGTAGGAATGGCTAAATATGCAATCGTTCAGATCTTGATTCTCTTGTTCTATCAGTGGATGCAATTGAT
CTTGTTAATCCTCGCTACCTATGCTGTTTT------GTACCAAATTCTCACTTCTATCATCTGAAAAATTCCCCAATTCC
TTGCTCTCTAAATTATGGCGCTCAATTTCAAACACTGATTGTAAATTCCTTATGAAGATCCACACAATCATATTACTATT
GAGCTGCAAAG-AAAAATTTGCACCTGATGACCAGCTTTCTGTCAGTCAGCATCACCATCTTAGACTTGCTCAAGCATGT
ACCAGCGAACCACAAAAGCCATGCCAAGACATTCCGGCAGTTAATTTCAGCTTGATCTTTCCCTCAGTAGTTGAGTTCTT
TACATGTTGTATTCACAGCCCAAACAAATTCTTCCGGTTGGAGTTGAGCCGGCCGTATGCAAAGTGAAGTTTGGGGAGTC
AGG-------TGTACGTAACAAACCACAAACCAGATTTATGATTTATGAGCCACTAGCCAGATAAGGTACTAATTTAGAT
TGACCTAAAG-AGAAACAAACATTGAGAAATTAAGATAGCAACCATGCTCATGTAAGAAAACTGATATAGCGATGTTTCA
CTTCGTTCCATCAACAAAAATATA-TTTTCTGAAAGTAAAATTGGTAACCACCATGGAAATACAACAGGTACAAATCTCA
GTAAAAAACACTTGGAATTGAACACATCGATTCTATTACAACCGATTCTTCGCTAAATCACTTGCAACCAAAACTAGTAC
CGAGTCCGGGGAAGGTCTTGTGCTAAGGATATAGTTTTTGTGTACGCTTCTCTTGTTTTTCATGCTGTTTTCGTGGATTT
ATATGGTTTTTCCAC-TATATTTTTCTGTTTGTTACATTTTTCTTTTGCTGAATTC---TTTATTGTTTCATTTTTTATT
TTTCCTCTGTTGTCTCTATTTATTTTTCCCATTGTCGTCTTTTGAAG--TTTTCCTTTTTACTTTTTCGTCGACTTTCTC
ATATCTTGTTTTTGTTTTGTCTCAGATTTTTAGTACTTTTTAGAAATAT------------
>chr6D_796
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--------ATCAAGTGCTAAAACAAAATCTCTGCGCTCTGATTGGTCGGTAGGACCGTCCCACGGATCGCGCCCCCCATA
CTAATCTCCACCGTCCACTACGCCAAGATCCAACGGCGAGCGCAGCATGTCACGCGGATCGCTCCCACCTCT--------
-----GCTTCCCGATAAAACCCGCGCCCACGCCGCCGTTCCAACTCACAAACTCAGAGCATTCCGATCCAGCACAACCGC
CGCCAACACAACACCTCGAGAGTCCTCG------CCGCCGGAGAAGT----CGCAAGCAAGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCCGCTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGTTACCTCAAG
AAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTTTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCGGAGGT
ATGCACAGAT--------------------------------------------------------------CTTTCCTC
TCCCCGAGCACCT----GCTCTGCTCTGTTCTTCTCGTTTTCG-ATGGATTGCTGAC-----------------------
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>chr6A_812
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------------------------AAATCTCTGCTCTCTGATTGGCCCATCTGGAGCTCCCACGGATCACCCCCCCTGCC
CGCCA----------CGCTCCCCTCAGATCCAACGGTGGGCGCAGCACGTCACGCGGATCGCTCCCCCCTCCCGCGACGC
TCCC-GCCTC-CAATAAAAGCCGCGCCCTCGCCGCCGTCCAGAAGCACAAACTCAGAGCATCCCGATCTAGCGCAACCGC
CGCCAACACCACACCTCGAGAGCCCTCA------TCGCCGGAGAAGCAGCAAGCAAGCAAGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCCGCTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGCCGCTACCTCAAG
AAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGT
GCGCACAGAT--------------------------------------------------------------CTTTCCTG
TCCCCGAGCATCT----GTCCTGCTCTGTTCTTCTTGTGTTCG-ACAGATAACTGAC-----------------------
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>chr6A_814
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--------------------------ATCCCCGCGTTCTGATTGGCCGATCCGACCCTCCCACGGATCACCACCCCCAGA
CCAATCCCCGCCGCCCGCTCCCCTCAGATCCAACGGTGCGCACACCCGGTCACGCGGATCGATCCCCCCTCCCGCGACGC
TCCT-GACTC-CGATAAAAGCCGCGTCCTCGCCTTCCTTCCAACCCACAAGCTCAGAGCATTCCGATCCAGCGCCACCGC
CGCCAACACCACAACATCTCGAGTAGTTTCCAGCTCGCCGGAGAAGT----AGCAAGCAAGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCAGGTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAG
AAGGGCCGCTACGCGCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCTGCCGAGGT
ACGCGCCGAT--------------------------------------------------------------CTTTCCCG
TCCTCCGGTGTTCCTTCCTTCTGCCCTGCTCTTCACTTGCTCG-CCGGATAACTGACAGAT-------------------
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>chr6A_886
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--------------------CCCTCAGATCCAACGGCTGGCGCACCGCATCACGCGGATCGCTCCCCCCGCCAGCGACGC
TCCC-GCCTCCCGATAAAACCCGCGCCCACGCCAGCGTTCCAACACACAAGCTCAGAGCATTCCGATCTAGCACCGCCGC
CGCAAACACCACACCTCGAGAGTCCTCG------TCGCCGGAGAAGTAGC-AGCAAGCAAGATGGCCGGAAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCAGGTCCGTCAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAG
AAGGGCCGCTACGCGCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCAGAGGT
ATGCGCCGAT--------------------------------------------------------------CTTCCCCG
TCCTTGAACATCT----GTTCTGCTCTGTTCTTCCCGTGCTCGGACAGTTAACTGACAGATTTCGTTT----TTGAATGC
GCAGGTCCTGGAGCTCGCCGGCAATGCTGCCAAGGACAACAAGAAGACCCGCATCATCCCGCGCCACCTGCTCCTCGCCG
TCCGCAATGACCAGGAGCTCCGCAGGCTGCTCGCCGGCGTCACCATCGCCCACGGTGGCGTGATCCCCAACATCAACT-C
CGTGCTGCTCCCCAAGAAGTCCCCCGCCGCCGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGACGGCCGCCAAGTCCC
CCAAGAAGAAGACCGCCGCCACCAAGGAGTAGCCGTCGTCCCCATAGCCTAGCCATTGTTGCTTAGATCCATTTCTCATG
GACTACGATGAGATCCTGTATGTAGTGTCTTGTAGTCTTCTGT--GCCCATCAGATTCGTCGAGCATGGGTGACATTGTA
CCTGTGATTTCTGTGACAATGGCGAAAGATGCAATCACTTCAATCTTAACTCTCTTGTTCTACTCT--------------
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>chr6B_886
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--------------------CCCTCAGATCCAACGGTGGGCGCAGCACGTCACGCGGATCGCTCCCCCCTCCCGCGAAGC
TCCCCGCCTC-CAATAAAATCCGCGCCCCCGCCGCCGTCCAAACCCACAAACTCAGAGCACTCCGATCCACCACCGCCGC
CGCACAGACCACAACATCTCGAGTAGTTTCCAGCTCGCCGGA-AAGC----AGCAAGCAAGATGGCCGGCAGGAAGGGCG
GCGACAGGAAGAAGGCGGTGACCCGCTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCGGGCGCTACCTCAAG
AAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGT
ATGCGCCGAT--------------------------------------------------------------CTCTCCAC
TCCTCGAGCCTCT----GT--TACTCTGTTCTTGCCCTGTTCG-ACGGATGGCTGACCGATCTGGTTCCTGGTTGAATTC
TCAGGTGCTGGAGCTCGCCGGCAACGCGGCCAAGGATAACAAGAAGACCCGCATCATCCCGCGCCACCTGCTGCTCGCCG
TCCGCAACGACCAGGAGCTCGGCAGGCTGCTCGCCGGCGTGACCATCGCCCACGGCGGCGTGATCCCCAACATCAACT-C
CGTGCTGCTCCCCAAGAAGTCCCCCGCCGCCGCCGAGAAGGAGGCCAAGTCGCCCAAGAAGAAGAGCACCACCAAGTCCC
CAAAGAAGAAGGTCGCCGCCA---AGGAGTAGCCG---TCCCCATAGCCTAGCCAGTGTTGCTTAGATCCAATTCTCATG
GACTAAGATGAGATCCTGTATGTAATGCCTGGTAGTCTGTAGT--TCCCGTCAGATTCGTCGAGCAAGTATGACATTGTA
TCTGTGATTTCTGTGACAATGTCGAAAGATGCAATC--------------------------------------------
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>SNPs
SSSSSS-----------------------------S---------------------------------SS---------
-------------------------S------S-----------------------------------------------
--S-------------S------SSS--------------S-------S-S--------------S-----S--------
-------------S---------SS-----S------------------------------------S------------
-------S---------------------------------------SSSSS----------------------------
SS-S-----S----------------------------------------------SS----------------------
--S--S------------------------------------S-------------------------------------
------------------------S------------------------------S------------------------
----------------------------------S---------------------S---S---------SS--------
---------------------S-----------------------------------S----------------------
----------------------S------------------------------------S--------------------
--------S---------S---SS----------------------------------------------------S---
-----S-----S--------------------------------------------------------------------
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----------------------------------------------------S---------------------------
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----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
------------S------------------------------------S----S-------------------------
---------------S----------------------------------------------------------------
-------------------------------S-----------------------------S----------------S-
---------S--------------------S------------------------------------S------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S-------S----S--
----------------------------------------------------------------S----S--S-------
-S----------S---S---S---------SSSSSS----S------------S----SS---------S---------S
---------S--------S--------S--------------------------------S-------------------
--------S--S-------S------S----S--------------------S---------------------------
----S------------------------------S------------SS---------------S--------------
------------------S--------------------------------------------S----------------
---SSSSSSS----S-----------------------------------------------------------------
----------S----------------S------------------------------------------S---------
--------------S-----S---S-------------------------------------------------------
-------------S-------------S------S------------------------S--------------------
-------SS-------------------------S--------------------------------------S--S---
----S------S-SSS----------------------------------------SSS---------------------
-----------------------------S---SSSS-SS---S--SSS---S---------------------------
S----------------------S------------------S------SSSSSSSSSSSS
>forward_404
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----------------------------------------------------------------CACGCACCCAAGCAAA
TCAA----------------------------------------------------------------------------
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>reverse_2165
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----ACGAACCACAAAAGCCATGC--------------------------------------------------------
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