>input_sequence_66253
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------ATGGCGCGGACGACGCTCCTCCTCGCCGCACCACCACCACCTGCTCTACCACACGTA------CTGCTCCTCCT
GCTCCTCCTGGGCATGGCCGCCGCCGACACCACCTCCACCACCAGCAGCACGGCCGCCGACACCTT--------------
-------------------CTACACCACCACCAGCAGCAGCGAACCGACGAGCGACCAACAACAGCAGCAAGCGTCGTCG
TCATCATCATCGTCTGCAGCAACACCATCATC---------ATCGTCTCCAGCAGGAGCA--------------------
-ACACCATCATCGCCGTCTCCAGCAGGAGCAGAAGCAGAAGCAACACCATCATCGTCCTATCCAGCAGGAGAAGCAGCAA
CACCATCATCGTCTCCAGCAGGAGA------------AGCACCATCACCGTCTCCAGCGGGAGGAGGAGGAGGAGCAGGA
GCACCACCGCCCCCGCCGGGGCCGGGGTTCTACAAGGGCATGTCCCGCGAGTTCGTGAACGAGCACAACAAGGTGCGCGC
CAAGTATGACGCGCCGACGCTGGCGTGGGACAAGACGCTGGCCTTGTACGCGCGGCGGTGGGCGGCGCAGATACAGCAGG
ACTGCGACCAGGCCCGGCACTCGCCGCAGGCCCATCCGCTGGGCTACGGCGAGTGCTTCTTCGTGGGCAACAACGGCACC
GCGGAGGACGCGCTGTGCAGCTGGGAGAGGGAGGAGTACATCTACGAGAAGGGCACCAAGCACTGCACCTCCGGCCACGA
CTTCCGCGACTGCGGCCACTTCGTCATCATGATCGAGAAGACGTACCACTACGTCGGCTGCGGCCGCGCCCCCTGCCTCA
CCGGCCCCCGCCAGGGCCAGTTCTTCATCTCCTGCAACTACAGCGCCGTTAGGCCCAACGCCACCACCGCCGGCGCCTCC
AACCCCTCCTGA--------------------------------------------------------------------
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>chr1A_1_TraesCS1A01G443800
CCACACCATTAGGGATGAGGTCAGGTGCCATGACCACCACCAGGTTATTTTTTGGGGCATTCTTTATCATCTTAGTGAGG
CTATCAGCATCTAGATTAAAGAGAAAAGGAGAATGG-GGGTCACCTAGACGCACTCCTTTGGCACT--------------
-----------------TTGATGCTAACCGTGCGATTATGGAGAA-TCTGCTTGATCCATCCACACTAGGTATCACTA--
--AATCCTCGGAGTTTGTGACATTCGAGGAGAAAATCCCAATTCACCTTATCATATGCTTTCTCAAAGTCCAATTCCAAC
ACCA-CCCCAATTCTTTTCTTCACATGGGTATAGTTCATGAGTTC------------------ATCCATGATATTTCTTC
CTTTAACAAAGGCATTGTGCCATTCTGGGTAGGGCTAATTAACTTGTCGGCATACTTAGCTACCTGACGATCTAACACCT
TAGTTAACAGCTTATTTGGACAGTGCAACAGGCAAATAGGC-------------------------------------CG
GAATTGTTGAATCCTGCCAGCC----CCGGATATCTTGGGAAGG--AGGGTGATAACGCCATAGTTGAGACGCTGGACAT
CCAGTGTCCCATTATGG------AAGTGCTTGAACAAGGACATAATATGGTCCTTGACAATCTCCCAGCATGCCTGATAA
AAGTCGGCAGGGATATTATCTGGTCCAGGGGCTCTATTAGAGTCCATTGCAAACAAAGCTTCCTTCAC-TTGATTCTCAC
TAAACTCTCTACACAGATCGATATTGTCATCTTCGTTTAACCACTCGATCGTTTCAAGATGAAAATGATTACCAGGAGCC
GGTTATTAGTTGATGGTGATATGGTGTCCAAAATAAGCAAGTTCCGGTTTGTATGT--------CATGCATGCACGTCAA
AAAAAGGTGAGGTAGC----------ATGGACGCCGGCCGGCCAACCAAACTCCTTTCCTTTCCTCTCCACTCCTCCTTT
GGCGGTGATATTATAGGAGGGTATCAAACAGTTGCATCCACGTCCGTACGTCGGCATTGAGATTT--GAGAGAGAGGCCG
GCGGCAATGGCGCGGACGACGCTCCTCCTCGCCGCACCACCACCACCTGCTCTACCACACGTA------CTGCTCCTCCT
GCTCCTCCTGGGCATGGCCGCCGCCGACACCACCTCCACCACCAGCAGCACGGCCGCCGACACCTT--------------
-------------------CTACACCACCACCAGCAGCAGCGAACCGACGAGCGACCAACAACAGCAGCAAGCGTCGTCG
TCATCATCATCGTCTGCAGCAACACCATCATC---------ATCGTCTCCAGCAGGAGCA--------------------
-ACACCATCATCGCCGTCTCCAGCAGGAGCAGAAGCAGAAGCAACACCATCATCGTCCTATCCAGCAGGAGAAGCAGCAA
CACCATCATCGTCTCCAGCAGGAGA------------AGCACCATCACCGTCTCCAGCGGGAGGAGGAGGAGGAGCAGGA
GCACCACCGCCCCCGCCGGGGCCGGGGTTCTACAAGGGCATGTCCCGCGAGTTCGTGAACGAGCACAACAAGGTGCGCGC
CAAGTATGACGCGCCGACGCTGGCGTGGGACAAGACGCTGGCCTTGTACGCGCGGCGGTGGGCGGCGCAGATACAGCAGG
ACTGCGACCAGGCCCGGCACTCGCCGCAGGCCCATCCGCTGGGCTACGGCGAGTGCTTCTTCGTGGGCAACAACGGCACC
GCGGAGGACGCGCTGTGCAGCTGGGAGAGGGAGGAGTACATCTACGAGAAGGGCACCAAGCACTGCACCTCCGGCCACGA
CTTCCGCGACTGCGGCCACTTCGTCATCATGATCGAGAAGACGTACCACTACGTCGGCTGCGGCCGCGCCCCCTGCCTCA
CCGGCCCCCGCCAGGGCCAGTTCTTCATCTCCTGCAACTACAGCGCCGTTAGGCCCAACGCCACCACCGCCGGCGCCTCC
AACCCCTCCTGAACCACCACCGGAGCCGGAC------------------CACCATCATCCACCTTTTTTTACCTACCTTT
---------------TCTATCTATCTAGATATCTGCTCTACTGTATTATATATTACCCTTCCTTCCTTCCTCCCTCCCTC
CCTCCCTCCCTCACATGCAATGCATTGCAATGCAAATGTGTATCATCTACACACATACATAGTGTATATTTACTACGGAG
TACCTGTGTAAAAAATCGATTTCAATTTCCTTTG---------GGCGATTTCTCTTCTCTGCTGCCAACTAAATGGATCA
TCATAATATCAATGTAGCTTCCAACATC-AATTGCCTACTTCAT------------TCATTCATTCATTACTTACGTGCA
CAGAGATGCATGTATCACTCT--CTCATACAAGAACATGACCGGTCCATCGACGCAGCAAACCCTGTTTTTTTTCATCAT
ACAAGGGTCCATGATATGAGATATGAGATATGAGTGAGCGATCAATCGATTAACCTACGGTACAGATTGACTGAGCAACA
TCAGCTCCGGCTTGCGCGATCAGGATCAGATCGATAGAACATTTCATCATCTTCAGTGGATGACTGGCTTGAGGGGCTGC
GCTCTCAGCTTCGACATGTCCAGCGCCGCGTCCAGCTCCTCGTCCACCTCACCCACCACGCCTCTGCATACGCAGTCAAC
AAACAACTCCATTTTTACATACATACATACA--------AA-----AAATTCAGTTAATGCATACATGT----ACAGAAG
TGAAAGGGGC---ACGCACATGTTATCACCCCTGATGATGTACAGACCAAGGACAAGCTGCTGTACTCCCTCCTGCAACA
CAACACGGCGTCTGTCAGCAGGGAGATTGACAGGGAGGGT------------ATAAAACTCAACAAGAAG----AGTCAG
TGTCCAAGGAACTAGTACGTATAATTTATT----TA------------TGCAAGAAAGACAGCAAGTCTTGTAGGATTTC
CATATG--AAAACCT----TGATGATTACAAAAAGGAGCCTAACAGAAATACCGAAACTGGAAAACCAATCACCGCATGG
GCAGACA
>chr1B_1
CCACACCATTAGGGATGAGGTCAGGTGCCATGCCCACCACCAGG-TATTTTTTTGGGCATTCTTTATCATCTTAGTGAGG
CAATCAACAACTAGATTAAAGAGAAAAGGAGAATGGTGGGTCACCCTGACGCACTCCTTTGGCACTTTGAAAATATGGAC
CTACACAATTGTTAAGCTTGATGCTAACCGTGCCATTATGGAGAAATCTGCTTGATCCATCCACACCAGGTATCACTA--
--AATCCTCGGAGTTCATGACAATCGAGGAGAAAATCCCAATTCACCTTATCATATGCTTTCCCAAAGTCCAATTCTAAC
ACCACCCCCAATTCTTTTCTTCACATGGGTATAGTTCAGGAGTTCATGCAGAGATAGCACACCATCCATGATATTTCTTC
CTTTAAAAAAGGCAC--------TCTGTGTAGGGCTAATTAACTTGTTGGTATACTTAGCTACCTGACAATCTAACGCCT
TAGTTAACAGCTTATATGAACAACGCAACAGACAAATAGGC-------------------------------------CA
GAATTGCTGAATCCTATCAGCT----CCAGATATCTTGGGAAGG--AGGGTGATAACACCATAGTTGAGACGCTGGACAT
CCAGTGTCCCATTATGATTATGAAAGTGCTTGAACAAGGACATAATATCGTCCTTGACAATCTCCCAGCATGCCTGATAA
AACTCAGCAGGGATATTATCTGGTCCAGGGGCTCTATTAGAGTCCATTGCAAACAAAGCTTCCTTCGCTTTGCGTCTCAC
TAAACTCTCTACACAGATCGATATTGTCATCTTCGTTTAACCTC----TCGTTTCAAGATGAAAATGTTTACCAGGAGCC
GGTTGTTAGTTGATGGTGATATGGTGTCCAAAATAAGCAAGTTCCGGTTTGTATGTCATGCATGCATGCATGCACGTCAA
AAAAAGGTGAGGTAGC----------ATGGACGCCGGCCGGCCAACCAACCTCCTTTCCTCTCCTCTCCACTCCTCCTTT
GGTGGTGATATAGTAGC----TATCAAACAGTTGCATCCACGTCCGTACGTCGGCATTGAGATTTGAGAGAGAGAGGCCG
GCGGCAATGGCGCGGATGACGCTCCTCCTC------------------------------------CTCCTGCTGCTCCT
CCTCCTCCTGGGCACGGCCGCCGCCGACACCACCTCCACTACCAGCAGCACGGCCGCCGACACCATG-------------
--------------------TACACCACCACCAGCAGCAGCGAACCGACGAGCGACCAACAGCAGCAGCAGGCGTCGTCG
CCATCATCATCA---------------------TCATCATCATCCTCTCCAGCAGGAGCAGGAGCAGAAGCAGAAGCAGC
AACACCATCATCATCGTCTCCAACAGGA------GCAGAAGCAACACCATCATCGTCCTATCCAGCAGGAGAAGCAGCAA
CACCATCATCGTCTCCAGCAGGAGA------------AGCACCATCACCGTCTCCAGCGGGAGGAGGAGGAGGAGCAGGA
GCACCACCGCCCCCGCCGGGGGCGGGGTTCTACAAGGGCATGTCCCGCGAGTTCGTGAACGAGCACAACAAGGTGCGCGC
CAAGTACGACGCGCCGACGCTGGCGTGGGACAAGACGCTGGCCCTGTACGCGCGGCGGTGGGCGGCGCAGATACAGCAGG
ACTGCGACCAGGCCCGGCACTCGCCGCAGGCCCATCCGCTGGGGTACGGCGAGTGCTTCTTCGTGGGCAACAATGGCACC
GCGGAGGACGCGCTGTGCAGCTGGGAGAGGGAGGAGTACATCTACGAGAAGGGCACCAAGCACTGCACCTCCGGCCACGA
CTTCCGCGACTGCGGCCACTTCGTCATCATGATCGAGAAGACGTACCACTACGTCGGCTGCGGCCGCGCCCCCTGCCTCA
CCGGCCCCCGTCAGGGCCAGTTCTTCATCTCCTGCAACTACAGCGCCGTTAGGCCCAACACCACCACCGCCTCCGCCTCC
AACCCCACCTGAACCGCCACCGGAGCCGGAGCCGGAGCCGGAGCCGGAGCACCATCATCCACCTTTTTTTACCTACCTAC
CAACCTATCTATCTATCTATCTATCTAGATATCTGCTCTAC---------------------------------------
--------------ATGCAATGCAA------GCAAATGTATATCATCTACACACATACATAGTGTATATTTACTACGGAG
TACCTGTGTAAAAAATCGATTTGAATTTCCTTTGGACGATTTCGGCAATTTCTCTTCTCTGCTGTCAACTAAATGGATCA
TCACAATATCAATGTAGCTTCAAACATTTAATTGCCTACTTCAT------------TCATTCATT----ACTTACGCGCA
CAGAGATGCATGTATCTCTCTCTCTCATACAAGAACATGACCGGTCCATCGACGCAGCAAACCGCGTTTTTTTTCATCAT
ACAAGGGTCCATGATATGAGATATGAGATATGAGTGAGCGATCAATCGATTAACCTACGGTACAGATTGACTGAACAACA
TCAGCTTCGGCTTGTGCGATCAGGATCAGATCGATAGAACATTTCATCATCTTCAGTGGATGACCGGCTTGAGGGGCTGC
GCTCTCAGCTTGGACATGTCCAGCGCCGCGTCCAGCTCCTCGTCCACCTCACCCACCACGCCTCTGCACACGCCGTCAAC
AAACAACTTCATTTTTACATACATACATACATACATACATACATACAAATTCAGTTAATGCATAGTACATATCACAGAAG
TGAAAGGGGCACTACGCACATGTTGTCGCCCCTGATGATGTACAGTCCGAGGACAAGCTGCTGTACTCCCTCCTGCAACA
CAACACAGTGTCTGTCAGCAGGGAGATTGACAGGGAGGGAGGGAGGGTATAAATAAAACTCAACAAGAAGAGTCAGTCAG
TGTCCAAGGAACTAGTACGTATAATTTATT----TATTTATTTATTTATGCAAGAAAGACAGCAAGTCTTGTAGGATTTC
CATATGCCAAAACCTTGTATGATGATTACAAAAAGGAGCCTAGCAGAAACAGCGAAACTGGA------------------
-------
>chr1D_1
CCACACCATTAGGGATGAGGTCAGGTGCCATGCCCACCACCAGGTTA-TTTTTTGGGCATTCTTTATCATCTTAGTGAGG
CAATCAGCAGCTAGATTAAAGAGCAAAGGAGAATGG-GGGTCACCCTGACGCGCTCCTTTGGCACTTTAAAAATATGGCC
CCACACAATTGTTAAGCTTGATGCTAACCGTGCAATTATGGAG-AATCAGCTTGATCCATCCGCACCAGGTATCACTAGC
TAAATCCTCGGAGTTTACGACATTCGAGGAGAAAATCCCAAT--------------------------------------
--------------------------------------------CATACAGAGATAGCACACCGTCCATGATATTTCTTC
CTTTAGCAAAGGCA--------TTCTGGGTAGGGCTAATTAACTTGTCGGCATACTTAGCTAGCTGTCGATCTAACGCCT
TAGTTAACAGCTTATATGGACAACGCAACGCCTTAGTTAACAGCTTAGTTAACAGCTTATACTTAGCTAGATTGTCAACG
GAATTGCTGAATCCTATCAGCCCCGGCCGGATATCTTGGGAAGGCGAGGGTGATAACGCCATAGTTGAGACGCTGGACAT
CCAGTGTCCCATTATGA------AAGTGCTTGAACAAGGACATAATATCGTCCTTGACAATCTCCGAGCATGCCTGATAA
AACCCAGCATGGATATTAGCTGGTCCAGGGGCTCTATTAGAGTCCATTGCAAACAAAGCTTCCTTCGC-TTGCGTCTCAC
TAAACTCTCTACACAGATCGATATTGTCATCTTCGTTTAACCTC----TCGTTTCAAGATGAAAATGTTTACCAGGAGCC
GGTTATTAGTTGATGGTGATATGGTGTCCAAAATAAGCAAGTTCCGGTTTGTATGT----CATGCATGCATGCACGTCAA
AAAAAGGTGAGGTAGCTAGCAATAGCATGGACGCCGGCCGGCCAACCAACCTCCTTTCCTCTCCTCTCCACTCCTCCTTT
GGTGGTGATATAGTAGC----TATCAAACAGTTGCATCCACATCCGTACGTCGGCATTGGGATTTGAG--AGAGAGGCCG
GCGGCAATGGCGCGGACGACGCTCCTCCTCGCCGCACCACCACCACCTGCTCTACCACACGTACTGCTCCTCCTCCTCCT
CCTCCTCCTGGGCACGGCCGCCGCCGACACCACCTCCACCACCAGCAGCACGGCCGCCGACACCACCTCCACCACCACCA
GCACGGCCGCCGACACCACCTCCACCACCACCAGCAGCAGCGAACCGACGAGCGACCAACAACAGCAGCAGGCATCGTCG
CCATCATCATCGTCTCCAGCAACACCATCATCGTCATCATCGTCCTATCTAGCAGGAGCAGGAGCAGCAGCAA-------
-----CACCAGCATCGTCTCCAGCAGGA------GCAGG------------------------AGCAGGAGCAGCAGCAA
CACCATCATCGTCTCCAGCAGGAGCAGAAGCAGGAGCAGGACCAACATCGTCTCCAGC------------AGGAGCAGGA
GCACCACCACCCCCGCCGGGGGCGGGGTTCTACAAGGGCATGTCCCGCGAGTTTGTGAACGAGCACAACAAGGTGCGCGC
CAAGTACGACGCGCCGACGCTGGCGTGGGACAAGACGCTGGCCCTGTACGCGCGGCGGTGGGCGGCGCAGATACAGCAGG
ACTGCGACCAGGCCCGGCACTCGCCGCAGGCCCATCCGCTGGGCTACGGCGAGTGCTTCTTCGTGGGCAACAACGGCACC
GCGGAGGACGCGCTGTGCAGCTGGGAGAGGGAGGAGTACATCTACGAGAAGGGCACCAAGCACTGCACCTCCGGCCACGA
CTTCCGCGACTGCGGCCACTTTGTCATCATGATCGAGAAGACGTACCACTTCGTCGGCTGCGGCCGCGCCCCCTGCCTTA
GCGGCCCCCGCCAGGGCCAGTTCTTCATCTCCTGCAACTACAGCGCCGTTAGGCCCAACGCCACCACCGCTGGCGCCTCC
AACCCCTCCTGAACCACCACCGG------------AGCCGGAGCCGGAGCACCATCATCCACCTTTTTTTACCTA--TAC
CTACCTATCTATCTATCGACTAGAT---ATATCTGCTCACATGCAATGCA------------------------------
--------------ATGCAATGCAA------GCAAATGTGTATCATCTACACACATACATAGTGTATATTTACTACGGAG
TACCTGTGTAAAAAATTGATTTCAATTTCCTTTCGA---------CGATTTCTCTTCTCTGCTGTCAACTAAATGGATCA
TCATAATATCAATGTAGCTTCCAACATC-AATTGCCTACTTCATTCATTCATTCATTCATTCATTCATTACTTACGTGCA
CAGAGATGCATGTATCTCTCTCTCTCATACAAGAACATGACCGGTCCATCGACGCAGCAAACCCTG-TTTTTTTCATCAT
ACAAGGGTCCATGATATGAGATATGAG--ATGAGTGAGCGATCAATCGATTAACCTACGGTACAGATTGACTGAACAACA
TCAGCTTCGGCTTGCGCGATCAGGATCAGATCGATAGAACATTTCATCATCTTCAGTGGATGACCGGCTTGAGGGGCTGC
GCTCTCAGCTTGGACATGTCCAGCGCCGCGTCCAGCTCCTCGTCCACCTCACCCACCACGCCTCTGCATACGCCGTCAAC
AAACAGCTTCATTTTTACATACATACATACATACATACAAA-----AAATGCAGTTAATGCATAGTACATATCACACAAG
TGAAAGGGGCACTACGCACATGTTGTCGCCCCTGATGATGTACAGTCCGAGGACAAGCTGCTGTACTCCCTCCTGCAACA
CAACACAGTGTCTGTCAGCAGGGAGATTGACAGGGA--------GGGTATAAATAAAACTCAACAAGAAGAGTCAGTGC-
---CCAAGGAACTAGCTAGTATAATTTATTTATTTA------------TGCAAGAAAGACAGCAAGTCTTGTAGGATTTC
CATATGCCAAAACCT----TGGTGGTTACAAAAAGGAGCCTAACAGAAACACCGAAACTGGGAAACCGATCACCACATTG
GCAAACA
>SNPs
--------------------------------S--------------------S--------------------------
-S-------S-----------------------------------SS---------------------------------
---------------------------------S--------------------------------S-------------
----------------S---------------------------------------------S-------------S---
--------------------------------------S-----------------------------------------
--------------SSSSSSSS------------------------------------------------------S---
---------------S------SS-------S------------------------------------------------
------S--------SS---------------------------------------------------------------
----------------S-------------------------------S-------------------------------
--S--S------------------------------------------------------------S-----SS------
------------------------------------------S-SSSS-------------------S------------
--------------------------------------------------------------------------------
-------------------------------------------------S----------S-------------------
--S--------SS---SSSSS-----------------------------------------------------------
--------------------------------------------------------------------------------
S-------------S-------------------------------------------------S---------------
----------------------------------------------------------------------S---------
S--------------S----------------------------S-----------------------------------
------------SS--------------SSSSSS----------------------------------------------
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---------------------S----------------------------------------------------------
------S------------------------------------S------------------------------------
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------------------------------S-----------------------------------------------SS
-------------------------------------------S-S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS----------SSSSSSS-------------------------------------------------
----------------------------------------------------------------S---------------
--------------------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------S-----
------S---------------------------------------------------------S---------------
-----------S-------------------------------------------------------------S------
--------S-------------------------------------------------------SSSSS-----------
------------------------S--S-----------------S--S-------------------------------
------S-S------------------------------S----------------------------------------
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-------------------------------------------------S-----------------S------S---S-
---S---
>forward_126
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--------------------------AAGGAGAATGGGGGTCACCT----------------------------------
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>reverse_1469
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----------------------------GCAGAAGCAGAAGCAACACC--------------------------------
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>forward_1201
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-------------------------------------------------------------CACACGTACTGCTCCTCCT
G-------------------------------------------------------------------------------
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>reverse_2219
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----------------------------------------------------------TTCCTTCCTTCCTCCCTCCC--
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