>input_sequence_66249
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-------------------------ATGTCAAGTGGGACCTCGTTCGCGTCGAGCCAAGGGACCCGGAGCTCCAGGTCTG
CCGAGGATTGCCCGGACCTCCGGGCCCAGATGGAGAAGAGGAGGAAGAGGAGGAAGGAGTCCAACCGGGAGTCGGCACGG
CGATCTAGGGTGCGCAAGCAACAACACCTCGACGACCTCTCCTCGCAGGTTTGTCACACCCTTCCAAGTATGCTATTTAT
ATAGGTGCACATAAGCATAAAGTTTGTACATGTCCATAATTTAATTGTTTAGCTGTCATAAATATTTAAAACATGTTTTT
TTATGAGAGC--GCGCTCAAGCATGTGAAACCAAAAATAGATGAAAACGAAGGCCACCTA-AAATATCTGCTCAGACAAA
ACATAGTTATTGTGATTTCCATGCCCCACCAATTGCCCCCTACCTAACACTTTGAACAACACTACAAATTCATTCATCAT
CATGAGTTGCTTAA--TTTATAACAGGTTGAGTTTTTATCAAACTAGTAGCATAGCGTATCACATCTTCTACATGAAAGA
AAACCTAACAAGAACACGAGAAAAAAAAAGAATCTACATATTGCTAAGAAGAATATATTT-TGTGACAAAAACAGGTGGA
TCAGCTCAAGAACCAGAGCCAACAAATGAACATGGTGCTGGGCATGACCACACAAAACCTTGTGGCGCTGCAAGCACAGA
ACTCGGTGATGCAGACACAGAAGATGGAGCTGGAGAGCAGGCTGTGCGCCCTAGGCGAGATCATCTGCTGCATGAACTCA
ATCACCAACACTGTGAATCCCACCGCCGCCATGGGCGCCACAGCAAGCAGTGCCTACGACGTTTTTGGCGCCGGCAGCGC
ATGGAGCCAGCCCATAGACTTGTACCAGTGCTTCTAG-------------------------------------------
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>chr5D_1_TraesCS5D01G183500
CAGATGCCGCAGAAGATTCCGAGCGCATCTCGCCATCCCTTTCACCTTTCCCGTCCACCACCACCACCACCA---TTACC
AATTTCTTTCGCAATTGTTTCTCTCGCTAAAACCGCCCATTTTTCGGCTATAAATGCCGCCTCTCCACCAAGCTTCAATT
CCCTTTTCCCCACTTCCCCAGCTCCCTTGCTAGGTTTCCTTCCTTCCGCCCCAGCTCCGTTGTGTTGCTGG------CAG
CTTGGGTCTTGGCTGCTGCCTAAACC-CTGTCTGTCCAAGGTGGACACACACAAGCTCGCCACCTCAGCCTCCAACCTCC
AGCCTTTCTTCCCAAATCTTGATC-TTGACTTAGGGAGGCTCTGCCCAAATTTTCTTCCCCGGTCATCCATTTCCAGGGG
AGGTTCTGCCAAAAAATTATCCTCCCATCATCCATTTC------------------------------------------
---CCAGGGGAGGTTCTGCCAAAAATTCCTTCACCGATCATCCATTTCCAGGGGAGGCTCTGCCAAAATTCCATCTGAAC
TTCATTCAATTTCCAAGGGGAGGTTCTGCCGAAATTTGATCTGCGACAGTTTCATTTCCAAGGGGAGGTTCTGGCAAAAA
ATAAAAAT--ATATTTCTTGCCACATAGCACCAAAACTTGTATCTGAAAACAGAACAGATCGATAATATTTCATTTGCAA
GGTAAAGAAAAGAGTTTGTTGTGTTCTTGATGATAGAGACGCAGTAGCAC---GTGTAGATGTTGTTGCTGGTCCTGTTG
GAGTATCCCCTCTCCGGATTTATGGTCGGCGCAGCGATCACTCGCCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTG
GTTCTACGTCTTCTCCCTAACCTCCCTGTAGCTCTGTAGCTGTAGCCGGAGTTCA---TACTAGTAACATAATCAAGCTA
GCTAGCACTGAGTAACAAAGGTACCCAAGTGCTGTTACAAGGTGTGTTTTT-ATACTCAAGATATAAGAGCAAGTGAAAC
TGCTGTGAGTTGTTGAGAGGTGACCATGTCAAGTGGGACCTCGTTCGCGTCGAGCCAAGGGACCCGGAGCTCCAGGTCTG
CCGAGGATTGCCCGGACCTCCGGGCCCAGATGGAGAAGAGGAGGAAGAGGAGGAAGGAGTCCAACCGGGAGTCGGCACGG
CGATCTAGGGTGCGCAAGCAACAACACCTCGACGACCTCTCCTCGCAGGTTTGTCACACCCTTCCAAGTATGCTATTTAT
ATAGGTGCACATAAGCATAAAGTTTGTACATGTCCATAATTTAATTGTTTAGCTGTCATAAATATTTAAAACATGTTTTT
TTATGAGAGC--GCGCTCAAGCATGTGAAACCAAAAATAGATGAAAACGAAGGCCACCTA-AAATATCTGCTCAGACAAA
ACATAGTTATTGTGATTTCCATGCCCCACCAATTGCCCCCTACCTAACACTTTGAACAACACTACAAATTCATTCATCAT
CATGAGTTGCTTAA--TTTATAACAGGTTGAGTTTTTATCAAACTAGTAGCATAGCGTATCACATCTTCTACATGAAAGA
AAACCTAACAAGAACACGAGAAAAAAAAAGAATCTACATATTGCTAAGAAGAATATATTT-TGTGACAAAAACAGGTGGA
TCAGCTCAAGAACCAGAGCCAACAAATGAACATGGTGCTGGGCATGACCACACAAAACCTTGTGGCGCTGCAAGCACAGA
ACTCGGTGATGCAGACACAGAAGATGGAGCTGGAGAGCAGGCTGTGCGCCCTAGGCGAGATCATCTGCTGCATGAACTCA
ATCACCAACACTGTGAATCCCACCGCCGCCATGGGCGCCACAGCAAGCAGTGCCTACGACGTTTTTGGCGCCGGCAGCGC
ATGGAGCCAGCCCATAGACTTGTACCAGTGCTTCTAGGG---AAGAAGAATGGATGGTTGATGTTGTCATAGCTGGTAGG
GTCTCTATGAAGGCATCAGGTTCTGTATCAATCATGTAGGGCCTTCGTGTCACCATTGATGCGTGCCCCTCTCTCTC---
---------------------------TTTATTGTTTATTATGTGAGGTTGGGTTGTAATGGTTGGTGAGGGAGGGTAGG
AGGGGAATTGATGGCCCATTTTGTCAA--AGAGAGAGAGAGAGAGGCTAGGGATTTTCTACTGGCTCCTGATGGTGATGT
CTAGCTAGTAAGATGTGAAATTGGTACCTCTTGATATATAGTATATGCAAAGTGCTTCTTCATCTTCATGTACTCCCTGA
CTTTATACTAAATCAGCGACACTTATTTTAGGACGAAGGGAGTATATAATTATCCCCGCCTAGATCCTTCTCTTATCGCA
CGTGTCTCCTTTCCTCTTGGTTAGGCTCAAGTATTGT-------------------------------------------
----------------GCTCCAACATTTTTGAGATGTGAAGCTAGGTAGGTTTTTGCCCATAAGTTATATTTTGCAG--T
GGTGTAGATGTAAGTACAGAAGCATGCAAAA-TTTACGGACAAAAGTTGAATATTGCTCTATTGCCATTGCGACAAGGCA
AGGTGACTCAAGAAAGAAGTATGCAAGCAAGATACCTAATTAATCAGAATAATTCATGGAGGCTGGGAATAAATCCATAA
ATCTCACTAAATACCTAATGCACACCAACG--TGTGTAAATGTGAGCGCTAGGATTTGAACCGTAATGGACACTGTCGTG
CCTCAACAACTGTACCAACCCACCAAAAGGTGGGTTCTCTGCCTCTGCATTGTTCAATGTACAGGGCCTCAACTTACTAC
AGAGCCGTGCAAAATCCTCATGATAGCCCATAGCTAAACACAAGGGGAGGGAAAACAAAGTCCCGGCCAAAACAGGATAA
AGCACAAACCCACCTAAGGAGAGAGCATACAAGAGATTATAATCTGCAAGGGGGTCAGCAATTTTCTGCTTACAAAAACA
TCATTGCCACAAAGTC
>chr5B_1
CAGATGCCACAGAAGATTCCGAGCACACCTCGCCATCCCTTTCACCTTTCCCGTCCACCACCACCA---------TTACC
AATTTCCTCCGCGATTGTTTCTCTCGCTAAAACCGCCCATTTTTCGGCTATAAATGCCGCCTCTCCACCAAGCTTCAATT
CCCTTTTCCCCTCTTCCCCAGCTCCCTTGCTGGCAAACAGCAG-------------------------AGCAGAGCACAG
TCTGTTTCCTGGCTGCTGCCTAGCCC-GTCCACAGTGGG----------CAAAAGCCTGCCACCTCAGCCAAATCC----
-----TTCTTCCCAAATCTTAGGTTTTGACTTGGGGAGGCTCTGCCCAAATTTGTTTCTCCGCTCATCCATTTCCAGGGG
AGGTTCTGCCAAAAAATTCTCCCCTCATCATCCATTTT------------------------------------------
---CCAGGGGAGGCTCTGCCAAAAATTCCTTCTCCCATCGTCCATTTCCAGGGGAGGCTCTGCCAAAATTCCCTCTGCAG
TTCACTCCATCTCCAAGGGGAGGTTCTGCCCAAATTTGATCTGCACCCGTTTCATTTCCAAGGGGAGCTTCTGGCAAAAA
ATAAAAATATATATTTCTTGCCACACAGCACCAAAACTTGCATCTGAAAACAGAACACATCGGTA--ATTTCATTTGCAA
GGTAAAGAAAAGAGTCTGTTGTGTTCTTGATGATAGAACCGCAGTAGCAC---GTGTAGATGTTGTTGCTGGTCCTGTCG
GAGCATCTCCTCTCCGGATTTATGGTCGGCGCAGCGATCACTCGCCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTG
GTTCTACGTCTTCTCCCTAACCTCCCTGTAGCTCTGTAGCTGTAGCTGGAGTTCATACTACTAGTAACATAATCAAGCTA
GCTAGCACTGAGTAACAAAGGTACCCAAGTGCTGTTACAAGGTGTGTTTTT-ATACTCTAGATATAAGAGCAAGTGAAAC
TGCTGTAAGTTGTTGAGAGGTGACCATGTCAAGTGGGACCTCGTTCGCGTCGAGCCAAGGGACCCGGAGCTCTAGGTCCG
CTGAGGATTGCCCGGACCTCCGGGCCCAGATGGAGAAGAGGAGGAAGAGGAGGAAGGAGTCCAACCGGGAGTCGGCACGC
CGATCTAGGGTGCG-AAGCAACAACACCTCGACGACCTCTCCTCGCAGGTTTGTTACACCCTTCCAAGCATGCTATTTAT
ATAAGTGCACATAAGCATAAAGTTTGTACATGTCCATAATTTAATTGTTTAGTTGTCATTAATATTTAAAAGATGTTTTT
TTTTGAGAGCATGCACCCAAGCATGTGAAAACAAAAATCGATGAAAACGAAGGCCCGCCTGAAATATCTGCTCAGACAAA
ACATAGTTATTGTGATTTCCATGCCCCACCAGTTGCCCCCTACCTAACACTTTGAACAACACCACAAATTCATCCATCAT
CATGAGCTGCTTATAGTTTGCAATAGGTTGAG-TTTCATCAAACTAGCAGC-------ATCACATCTTCTACATGAAAGA
AAACCTAACAAGAACATGAG-GAAAAAAAGAATCTACATATTGCTAAGAAGAAAATATTTTTGTGACAAAAACAGGTGGA
TCAGCTGAAGAACCAGAGCCAGCAACTGAGCATGGTGCTGGGCATGACCACCCAAAACCTTGTGGCACTGCAAGCACAGA
ACTCGGTGATGCAGACACAGAAGATGGAGCTGGAGAGCAGGCTGTGCGCCCTGGGCGAGATCATCTGCTGCATGAACTCA
ATCACCAACGCCGCGAACCCCGCCGCCGCCATGGGCGCCACGGCAAGCGGTGCCTACGACATTTTTGGCGCCGGCAGCAC
ATGGAGCCAGCCCATAGACTTGTACCAGTGCTTCTAGGGAAGAAGAAGAATGGATGGTTGATGTTGTCATAGCTGGTAGG
GCCTCTGTGAAGGCATCAGGTTCTGTATCAATCATGTAGGGCCTTCGTGTCACCATTGATGCGTGCCCCCCTCTCTC---
---------------------------TTGATTGTTTATTTTGTGAGGTTGGGTTGTAATGGTTGGTGAGGGAGGGTAGG
AGGGGAATTGATGGGCCATTTTGTCAA--AGA----GAGAGAGAGGCTAGGGATTTTCTACTGGCTCCTGATGGTGATGT
CTAGCTAGTAAGATGTGGAATTGGTACCTCTTGATATATAGTATATGCAAAGTGCTTCTCCATCTTCATGTACTCCCTGA
CTTTGTACTAAATCAGCGACACTTATTTTGGGACGAAGGGAGTATATAATTATCTCCGCCTAGATCCTTCTCTTATTGCA
CGTGTCTCTTTTCCTCTTGGTTAGGTTCAAGTATTGTGCTCCAACATTTTTGAGATGTGAAGCTAGGTAGGTTTTTGCCA
TAATTTCAAGTATTGTGCTCCAACATTTTTGAGATGTGAAGCTAGGTAGGTTTTTG-CCATAATTTCTATTTTGCAGATT
GGTGTAGATTTGGTATAGAAGCATTGCAACATTTTACGGATAAAAGTCGAATATTACTCTATTGTCATCGCAACAAGGCA
ATGTGACTCATGAAAGAAGTATGCAAGCCAGATACCTAATTAATCAGAATAATTAATGGAGGCCGGGAATAAATCCATAA
AT-TCACTAAATTCCTAATGCACGCCAACTCTTGTGTAAATGTGAGTGCTAGAATTTGAACCCTAATGGATACTGTCGTG
CCTCAACAACTCTACCAACCCACCAAAAGGTGGGTTCTCTGCCTCTGCATTGTTCAATGTACAGAGCCTCAACTTACTAG
AGAACCTTGCAAAATCCTCATGATAGCCCATAGCTAAACACTAGGGGAGGGAAA-CAAAGTCCAGGCCAAAACAGGATAA
AGCACAAACCGACCTAAGGATAGAGCATGCAAGAGATTATAATCTACAAGGGGGTCAACAATTTTCTGCTTACAAAAACA
TCATAGCCACAAAGTC
>chr5A_1
CAGATGCCGCAGAAGATTCCGAGCGCATCTCGCCATCCCTTTCACCTTTCCCGTCCACCACCACCACCACCACCATTACC
AATTTCTCTCGCAATTGTTTCTCTCGCCAAACCCGCCCGTTTCCCGGCTATAAATGCCGCCTCTGCACCAAGCTTCAATT
CCCTTTTCCCCTCTTCCCCAGCTCCCTTGCTAGGTTTCCTTCCGCTCCGCCGTGAGAGCACGCCAAACAGCAGAGCACAA
TCTGTTTCTTGGCTGCTGTCCAGCCCCGTCCACAGTGGC----------CAAAAGCCCGCCACCTCAGCCAAATCC----
-----TTCTTCCCAAATCTTAGGTTTTGACTTGGGGAGGCTCTGCCCAAATTTTCTTCCCCGGTCGTCCATTTCCAGGGG
AGGTTCTGCCAAAAAATTCTCCCCTCATCATCCATTTCCCAGGGAAGGCTCTGCCAAAAATTCCTTCACTGATCATCCAT
TTCCCAGGGGAGGCTCTGCCAAAAATTCCTTCGCCGATCATCCATTTCCAGGGGAGGCTCTGCCAAAATTCCATCTGAAC
TTCATTCAATTTCCAAGGGGAGGTTCTGCCGAAATTTGATCTGCGACCGTTTCATTTCCAAGGGGAGGTTCTGGCAAAAA
ATAAAAA-ATATTTTTCTTGCCGCACAGCACCAAAACTTGCATCTGAAAACAGAACAGATCGATAATTTCA---TTGGAA
GGTAAAGAAAAGAGTCTGTTGTGTTCTTGATGATAGAGCCGCAGTAGCACCAGGTGTAGATGTTGTTGCTGGTTCTGTTG
GAGCATCCCCTTTCCGGATTTATGGTCGGCGCAGCGATCACTCGCCTCGTCCAGTCCTTCTCCGTCGTCTTCCTCTACTG
GTTCTACGTCTTCTCCCTAACCACCCTGTAGCTCTGTAGCTGTAGCTGGAGTTCA---TACTAGTAACATAATCAAGCTA
GCTAGCACTGAGTAACGAAGGTACCCAAGTGCTGTTACAAGGTGTGTTTTTTATACTCAAGATATAAGAGGAAGTGAAAC
TGTTGTAAGTTGTTGGGAGGTGACCATGTCAAGTGGGACCTCGTTCACGTCGAGCCAAGGGACCCGGAGCTCCAGGTCCG
CCGAGGATTGCCCGGACCTCCGGGCCCAGATGGAGAAGAGGAGGAAGAGGAGGAAAGAGTCCAACCGGGAGTCGGCACGC
CGATCTAGGGTGCGCAAGCAACAACACCTCGACGACCTCTCCTTGCAGGTTTGTTACACCCTTCCAAGCATGCTATTTAT
ATAGGTGCACATAAGCATAAAGTTTGTACATGTCCATAATTTAATTGTGTAGTTGTCATAAATATTTAAAACATGTTTTT
TTGTGAGAGCATGCGCCCAAGCATGCGAAAACAAAAATTGATGAAAACGAAGCCCCACCCGAAATATCTGCTCAGACAAA
ACACAGTTATTGTGATTTCCATGCCCCACCAATTGCCCCCTACCTAACACTTTGAGCAACACCACAAATTCATCCATCAT
CATGAGCTGCTTATAGTTTGCAATAGGTTGAG-TTTCATCAAACTAGCTGC-------ATCACATCTTCTACATGAAAGA
AAACCTAACAAGAGCATGAG-AAAAAAATGAATCTACATATTGCTAAGAAGAATATATTTTTGTGACAAAAACAGGTGGA
TCAGCTCAAGAACCAGAGCCAACAAATGAACATGGTGCTGGGCATGACCACCCAAAACCTTGTGGCGCTGCAAGCACAGA
ACTCGGTGATGCAGACACAGAAGATGGAGCTGGAGAGCAGGCTGTGCGCCCTGGGCGAGATCATCTGCTGCATGAACTCT
ATCACTAGCACAGCGAACCCCGTCGCCGCCATGGGCGCCACAACAAGCAGTGCCTATGACATTTTTGGCGCCGGCAGCAC
ATGGAGCCAGCCCATAGACTTGTACCAGTGCTTCTAAGGAAGAAGAAGAATGGATGGTTGATGTTGTCATAGCTGGTAGG
GCCTCTATGAAGGCATCAGGTTCTGTATCAATCATGTAGGGCCTTCGTGTCACCATTGATGCGTGCCCCCCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTTGATTGTTTATTTTGTGAGGTTGGGTTGTAATGGTTGGTGAGGGAGGGTAGG
AGGGGAATTGATGGGCCATTTTGTCAAAGAGA----GAGAGAGAGGCTAGGGATTTTCTACTGGCTCCTGATGGTGATGT
CTAGCTAGTAAGATGTGGAATTGGTACCTCTTGATATATAGTATATGCAAAGTGCTTCTCCATCTTCATGTACTCCCTAA
GTTTATACTAAATCAGTGACACTTATTTTGGGACGAA---------TAATTATCTCCGCCTAAATCCTTCTCTTATCGCA
CGTGTCTCTTTTCCTCTTGGTTAGGCTCAAGTATTGCGCTCCAACAT---------------------------------
-------------------------TTTTTGAGATGTGAAGCTAGGTAGGTTTTTGCCCATAAGTTATATTTTGCAGATC
AGTGTAGATGTAAGTTCAGAAGCATGCAACA-TTTACGGATAAAAGTCGAATATTGCTCTATTGCCATCGCGACAAGGCA
AGGTGACTCAAGAAAGAAGTATGCAAGCAAGATACCTAATTAATCAGAATAATTCATGGAGGCTGGGAATAAATCCATAA
ATCTCACTAAATACCTAATGCACACCAACG--TGTGTAAAG------GCTAGGATTTGAACCCTAATGGATACTGTCATG
CCTCAACAACTCTACTAACCCACCAAAAGGTGGGTTCTCTACCTCTGCATTGTTCAATGTACAGAGCCCCAGCTCACTAC
AGAGCCTTGCAAAATCCTTATGATAGCCCATAGCTAAACACTAGGGGAGGGAAAACAAAGTCCCGGCCAAAACAGGATAA
TGCACAAACCCACCTAAGGATAGAGCATGCAAGAGATTA-----------------------------------------
----------------
>SNPs
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-----------S-------------------------------SSS-SS--SS-SSSSSSS-SSSSS-S-S---------
SS--SS----------------SS---S-SSSSSSSSSSSSSSSSSSSS--S----S-------------SSSSS-SSSS
SSSSS---------------SSSS--------S-----------------------------------------------
------------------S---S-S-------------------------------------------------------
-------------S------------------S-----------------------------------------------
-----------------------------------------------S--------------------------------
-------------------------S--------------S---------------------------------------
---------------S----------------------S-----------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------S---------------------------------
--------------------------------------------------------------------------------
------S-----------------------------------------------------------------------S-
-------------------------------------------------------------------------------S
------------------------------------------------------S-------------S-----------
----------------------------------------------------S---------------------------
--S-------------S-------------S-------S----------------SS-SS--------------------
--------------------------------------------------------------S----------S------
------S------S-----SS--S--------S---S----------S---SSSSSSS----------------------
----------------S---S-----------------------------------------------------------
---------------------------------------------------S----------------------------
----------------------------------------------------S---------------------------
-----------S-S---S---S--------------------------------------S-----------------S-
--------------------------------------------------------------------------------
-S-------------------------------------------------------------------S----------
-----------------------------S----------S---------------------------------------
--------------S-----------------SSSS--------------------------------------------
-----------------S-----------------------------------------S--------------------
-----------------------------S------------------------S-------------------------
--------S-----------------------------------------------------------------------
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---------------S-------------S----------S------S--------------------S-----------
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----------------------------------------------S---------------S-------S---------
-----------S----------------------------------------------------S---------------
------S----------------------------------S--------------------------------------
--------------------S-------S----------------S-----------S----------------------
----S-----------
>forward_274
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--------------TGCTGCCTAAACCCTGTCTG----------------------------------------------
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>reverse_1813
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----------------------------------------------------AGGCGAGATCATCTGCTGC---------
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>forward_275
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---------------GCTGCCTAAACCCTGTCTGT---------------------------------------------
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>reverse_1919
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------------------------------------------------------------------------------GC
ATGGAGCCAGCCCATAG---------------------------------------------------------------
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>forward_804
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----------------------------------------------------------------GTTGCTGGTCCTGTTG
GAGT----------------------------------------------------------------------------
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>reverse_2783
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--------------------------------------------------------------GTAATGGACACTGTCGTG
CC------------------------------------------------------------------------------
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----------------
