>input_sequence_66243
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---------------------------------------------------------ATGGCGCTCGCCTCCACCTCCGC
CACCGCCTCCGCGGCCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCCAATGCCGCCTCCCTCGGCGCCG
CCAAGCCCGTGACGCGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGAT
GCCGAGTTCATCAACCCGTCCTGGCTCGATGGCTCGTAAGTCTTCCTCGTTCGTAGTATTTCTCTTCGTTCGTCGCCCTG
CATTAATCCCACTCTACGCGAGGGGAGGCCTCCATG----GCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCT
CCCCGGTGACTTCGGCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGA
TCCACGGGCGCTGGGCGATGGCCGCGGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCC
GGAGCGCAGCCTGGCGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGA
GTCCAAGCGGTGGGTCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGA
ACTTCGCCAACTTCACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAG
GACGGCGTCTACATCCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCT
TGCCATGCTCATCTTCTACTTCGAGGCCGGGCAGGGCAAGACGCCGCTCGGCGCGCTCGGCCTATAA-------------
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>chr2D_1_TraesCS2D01G320900
TTGTAGGTGTTTCTCAAAGAAAAAAAGATCTAGCAACTTGCTCTATCGACTGACACACACA--AAAACCTAAAAGATCGC
TCCAAAATTTATACTGT--AAAAACTATCAAAACTTTGACTAAATATGGCAATCTAGAATGAAAAACGTTCTAGCGTTAA
AAGGTCAAAACAGAAGGTAATAACTAAGATTCTCTCTAAATCTAATTATATGCATTCTGCACGAAACTGAAATTTACTCT
AAATCAAATTGTATGCATTTTGCGCTAAATAAAAGGTTAGCTAGGCGTAAGGTCTTCCGTTGAAAGAAAAGGAAAAAAGA
AATCTAGCATGTTATGTTGGATGGCAACACGCATGTGTGAGCTTGTGTTAAGCGCCTTGATGATCTAATGCATATCTCTT
GGAAACGATGAAGAATATGTTTTTATCATAGGACTTGAACTCTGGTGTGTTGAAGATGCCACTGTTCTCCTAATCATTTA
ACCACAGATCGGTTCGCACGATGAAGCATATTTTCATGGTAGAAAACAGTACCATATTGCGTTCTATGTGCCTCAATAAA
AAAGTTGCATTCCATGTGCGGAATGTCATGCCATCTCCAAAGGTGACCGTCATCCTGTGACCG----------GGCAATT
ATAACGCCCGTGAATGGATGGATC-GATCTTCTTTCACTATTCTCCACGGAGATCCTACGACACGGTCCGATTGGCAGCC
AGTCCCCACAGATCACAA-GAGCATCAAAGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATGGC
GCCAGCTCCCCATTGGCCAGCGCTCTATCCATCCTACCACCCCAGGATTTCCCCGCCCACATCTTGTGGCTGCCGTGCGC
CGCAACGCCACGATTTAACATCAAAACCGTCGTGGCATCCTGCAAATCCTGCGCGCTCCAACAGACGTCCT-AGCTGCCA
CTCCGCCGCGCGCGTCAGGGACCTCACCGTCACACCGGCGAAGCAACACCGGCACCCATGGCGCTCGCCTCCACCTCCGC
CACCGCCTCCGCGGCCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCCAATGCCGCCTCCCTCGGCGCCG
CCAAGCCCGTGACGCGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGAT
GCCGAGTTCATCAACCCGTCCTGGCTCGATGGCTCGTAAGTCTTCCTCGTTCGTAGTATTTCTCTTCGTTCGTCGCCCTG
CATTAATCCCACTCTACGCGAGGGGAGGCCTCCATG----GCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCT
CCCCGGTGACTTCGGCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGA
TCCACGGGCGCTGGGCGATGGCCGCGGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCC
GGAGCGCAGCCTGGCGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGA
GTCCAAGCGGTGGGTCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGA
ACTTCGCCAACTTCACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAG
GACGGCGTCTACATCCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCT
TGCCATGCTCATCTTCTACTTCGAGGCCGGGCAGGGCAAGACGCCGCTCGGCGCGCTCGGCCTATAAGACGATTTTTTGG
CTTGCGCGCGTGGTGGGAGAGGGGTTGTTGCATTGCATCAGATCGGACGCATGGATTG-ATGGGATCTGCTGGAGGTCGA
AGAAGCAGCAGCAACGTATCTGTGTCCGTGACTTCTTTCGGGTGGTGTGTGTGAATCGAATGGGGAATCAAGTACTCTTT
CTTTCTCCAGCGTATGTACCATGTAATATATATAGTCTGAGCTCTGTAATTTAAGGCAGAATGAGCAAGGGCATTTGATT
CATCACCTACCAAGTCTTTTACTAGAACATTGCTTGCATATTTAAACAACCCGCAAAAAAAA--------TGCATCAGTT
GAAGGAAGCACGAAAACTAGCAAAGTCTGCACTGCTCAGCGCAAGATAGGGTCACGAGATTCATCTAAAAATAAAGCAAT
GAGTACCAGTCGAACAGGAACAGGTGTTGGCTCTGTAAACG--TTATAATACAGAATATATTAACAGGAGCACGCATTCC
TGAGC---------------------------------------------------------------------------
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-------------------------------------------------CTGAAACAGAGGAAAATTAGGAATAAATAAA
GAAACATAGGTGTTGCATTCCACGTTCGCAGGGTTCTTTGCAAACTTTCCTACAGAGTTCATCTCAAAATTGCCATGTAT
TTACCAAAGGCGAGTGATCTGCGCCGGCGCGCCGGTCCAAAGTTTAGTCCGGTCGCGCCCTAGCTGCAGGATGCCACTAT
TCCTAGCCGTTTGATCTAGCAAAAAAATATATTATTCGCCCCAGATCTTCTTTCTCCTCACGCATCTTACGCTCGCGCAG
CACCCTGCATCTAGCCGTCTCGCGCTGCTCCCCTTCAGTGGACGTCCTCGTCGCCGGTCCCCACCCTCGCCGGCCGTCCT
CGTCGCCAGTCCATACCCTCGCCGTCCGTCCTCGTCGCTGCCTCGACCCATGCAACAGCTCCACCTGTGGTTGCAGCTCT
CAACGGCGACGATTGTAGCTCTGTTTGTAGCTCCGCCGCCGCCCCTCGCTGTTGATGCTCGCTGAACGGAATTGCGTCGA
CG
>chr2A_1
TTGCAGGTGTTTCTCAATGACAAAAAGAACTAGCAGCTTGCTCTATCGACTGACACACACACAAAAACCTAAAGGATCAC
TCCAAAATTTAAACTGTGTAAAAACTATCAACACTTTCACTAAATATGGCAATCTAGAATGAAAAACATTCTAGCGTTAA
AAGGTCAAAACAGAAGGTAATAACTAAGATTCTCTCTAAATCTAGTTATATGCATTCTGCACAAAACTGAAATTTACTCT
ATATCAAATTGTATGCATTTTGCCCTAAATAAAAGGTTAGCTAGGCGTAAGGTCTTTCGTTAAAAACAAGAGGAAAAAGA
AATCCAGCATGTTATGTTGGATGGCAACACACATGTGTGAGCTTGTGTTAAGCGCCTTGATGATCTAATGCATATCTCTT
GGAAACGATGAAGAATATGTTTTTAACATAGGACTTGAACTCTGGTGTGTTGAAGATGCCACTGTTTTTTTAATCATTTA
ACCACAGATCGGTTCGCACGATGAAGGATATTTTGATGGTAGAAAATAGTACCATATTGCGTTCTATGTG--TCTAAAAA
AAAGTTGCATTATATGTGCGGTATGTCATACCATCTCCAAAGGTGACCGTCATCGTGTGCGAAACGACTCCTTGGCAATT
ATAACGCCCGTGGATGGATGGATCGGATCTTCTTTCACTATTCACCACGGAGATCCTACGACACGGTCCGATTGGCAGGC
AGTCCCCACAGATCACAAGGAGCATCAAAGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATGGC
GCCAGCTCCCCATTGGCCAGCGCTCTATCCATCCTACCACCCCAGGATTTCCCAGCCCACATCTTGTGGCTGCCCTGCGC
CGCAACGCCACGATTTAACATCAAAACCGTCGTGGCATCCTGCAAATCCTGCGCGCTCCAACAGACGTCCTTAGCTGCCA
CTCCGCCGCGCGCGTCAGCGACCTCACCGTCACACCGGCGAAGCAAGACCCGCACCCATGGCGCTCGCCTCCACCTCCGC
CACCGCCTCCGCGGCCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCCAATGCCGCCTCCCTCGGCGCCG
CCAAGCCCGTGACGCGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGAT
GCCGAGTTCATCAACCCGTCCTGGCTCGATGGCTCGTAAGTCTTCCTCGTTCGTATTGTTTCTCTTCGTTCGTCGCGCTG
CATTAATCCCACTCTACGCGGGGGGAGGCCTCCATGCATGGCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCT
CCCCGGTGACTTCGGCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGA
TCCACGGGCGCTGGGCGATGGCCGCCGTGCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCC
GGAGCGCAGCCAGGCGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGA
GTCCAAGCGGTGGGTCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACAGCCGAGA
ACTTCGCCAACTTCACCGGCGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAG
GACGGCGTCTACATCCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCT
CGCCATGCTCATCTTCTACTTCGAGGCCGGACAGGGCAAGACGCCGCTCGGCGCGCTCGGCCTATAAGACGATTTTT-GG
CTTGCGCGCGTGGTGGGAGAGGGGTTGTTGCATTGCATCAG----GACGCATGGATTGCATGGGATCGGCTGGAGGTCGA
AGAAGCAGCAGCAATGTATGTGTGTCCGTGACTTCTTTGGGGTAGTGTGTGTAAATCGAATGGGGAATCAAGTACTCTTT
ATTTCTCCAGCGTATGTACCATGTA--ATATATAGTCTGAGCTCTGTAATTTAAGGCAGAATGAGCAAGGGCATTTGATT
CATCACCTACCAAGTCTTTTA---GAACACTGCTGGCATATTTAAACAACCCGCAAAAAGAAGAAAAAATTGCATCAGTT
GAAGGAAGCACGAAAACTAGCAAAGTCTGAACTGCTCAGCGCAAGATAGGATCACGAGATTCATCTAAAAATAATGCAGT
GAGTACCAGTCGAACAGGAACAGGTGTTGGCTCTGAAAACATATTATAACACAGAATATATTAACAGGAGCACTATTCCT
GAA-C---------------------------------------------------------------------------
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-------------------------------------------------CTGAAACAGAGGAAAATTAGGAATAAATAAA
GAAACAGAGGTGTTGCATTCCACGTTCGCAGGGTTCTTTGCAAACTTTCCTACAGAGTTCATCTCAAAATTGCCATGTAT
TTACCAAAAGC---------------------------------------------------------------------
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>chr2B_580
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-----------------------TGTCGTGCCATCTCCAAAGGTGATCATCATCGTATGACCG----------GGCAATT
ATAACGCCCGTGAATGGATCGATC-GATCTTCTTTCACTATTCTCTACGGAGATCCTACGACACGGTCCGATTGGCAGGC
AGTCCCCACAGATCACAAGGAGCATGAAAGCCCAGGATATTGTCCACGCGGCGTCCACCGGCGCAGCAGAATCCGATGGC
GCCAGCTCCCCATTGGCCAGCGCTCTATCCATCCTACCACCCCAGGATTTCCCCGCCCACATCTTGTGGCTGCCGTGCGC
CGCAACGCCACGATTTAACATCAAAACCGTCGTGGCATCCTGCAAATCCTGCGCGCTCCAACAGACGTCC-TAGCTGCCA
CTCCGCCGCGCGCGTCAGCGACCTCACCGTC--ACCGGCGAAGCAACACCGGCACCCATGGCGCTCGCCTCCACCTCCGC
CACCGCCTCCGCGGCCGTGCTCAAGAACCCGTTCCTCGGCGCGAGGCGCGCGCTCGCTAATGCCGCCTCCCTCGGCGCCG
CCAAGCCCGTGACGCGCCGCGTGGTGGTCGTCGCCGCGGCCGTCGGCAAGAAGTCGTGGATCCCCGCGGTCAAGAGCGAT
GCCGAGTTCATCAACCCGTCTTGGCTCGATGGCTCGTAAGGCTTCCTCGTTC---GTATTTCTCTTCGTTCGTCGCCCTG
CATTAATCCCACTCTACGCGAGGGGAGGCCTCCATG----GCAGCAACTCTGAGACTCACTCAACGCGTACGTGCAGGCT
CCCCGGTGACTTCGGCTTCGACCCGCTGGGGCTTGGCAAGGACCCGGCGTTCCTCAAGTGGTACAGGGAGGCCGAGCTGA
TCCACGGGCGGTGGGCGATGGCCGCGGTCCTGGGCATCTTCATCGGGCAGGCGTACAGCGGCGTGCCGTGGTTCGAGGCC
GGGGCGCAGCCTGGCGCGGTGGCGCCCTTCTCCTTCGGGTCGCTCCTGGGCACCCAGCTGCTGCTCATGGGGTGGGTGGA
GTCCAAGCGGTGGGTCGACTTCTTCAACCCGGACTCCCAGTCGGTGGAGTGGGCCACGCCGTGGTCGCGCACGGCCGAGA
ACTTCGCCAACTTCACCGGTGAGCAAGGGTACCCGGGCGGCAAGTTCTTCGACCCGCTCGGCCTCGGTGGCGAGACCAAG
GACGGCGTCTACATCCCCGACACCGAGAAGCTCGAGCGGCTCAAGGTGGCCGAGATCAAGCACTCGCGCCTCGCCATGCT
TGCCATGCTCATCTTCTACTTCGAGGCCGGACAGGGCAAGACGCCACTCGGCGCGCTCGGCCTATAAGACGATTTTT-GG
CTTGCGCGCGTGGTGGGAGAGGGGTTGTTGCATTGCATCAGATCGGACGCACGGATTGCATGGGATCGGCTGGAGGTCGA
AGAAGCAGCAGCAATGTATCTGTGTCCGTGTCTTCTTTGGGGTGGTGTGTGTAAATCGAATGGGGAATCAAGTACTCTTT
CTTTCTCCAGCGTATGTACCATGTA--ATATATAGTCTGAGCTCTGTAATTTAAGGCAGAATGAGCAAGGGCATTTGATT
CATCACCTACCAAGTCTTTTACTAGAACATTGCTTGCATATTTAAACAACCCGCAAAA-----AAAAAATTGCATCAGTT
GAAGGAAGCACGAAAACTAGTAAAGTCTGCACTGCTCAGCGCAAGATAGGGTCACGAGATTCATCTAAAAATAATGCAGT
GAGTACCAGTCGAACA-GAACAGGTGTTGGCTCTGAAAACG--TTATAATACAGAATATATTAACAGGAGCACGCATTCC
TGAGCCTGAGGCCCTGTTTGGTTCATAAGTCTTAGGACTTTTTTTAATCCCAACTTATAAGTCTCAAGTCTCTAAAAAGT
CCTTACCTGTTTGGTTCCTGGGACTTATAAGTCCCTATAAGACCACATTACAACTATAAGTTCCTGTAAGACTCTCCTTG
AGAGTCTTATTTCATAAGTCCCAAATGCCCACTTTAAGTCTCTATAAGTCCCTCCTGTTTAGTTTAGATGTGACTTATAG
GGACTTTTTTAAGTCCCTAAACCAATAAGTCCATGGAAACAAACACCCTCTGAAACAGAGGAAAATTAGGAATAAATAAA
GAAACAGAGGTGTTGCATTCCACGTTCGCAGGGTTCTTTGCAAACTTTCCTACATAGTTCATCTC---------------
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>SNPs
---S-------------S--S-------S------S-------------------------------------S----S-
-----------S-------------------S-----S-----------------------------S------------
--------------------------------------------S-----------------S-----------------
-S---------------------S--------------------------------S----S---SS--SS-S-------
----S-------------------------S-------------------------------------------------
-------------------------S----------------------------------------S-SS----------
--------------------------S-------S-----------S-----------------------SS--S-S---
-----------SS--------S--------------------------------S-------------------------
------------------------------------------------------------------------------S-
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------------------S-------------------------------------------------------------
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------------------------------S----------------------------------------------S--
-------------------------------------------------------------------S------------
--------------S-----------------------S-------------S---------------------------
-------------------------SS-----------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------S---S-
-----------------------------------S--------------------------------------------
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------S-------------------------------------------------------------------------
--------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS
>forward_302
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------------------------------------------AGGCGTAAGGTCTTCCGTTG------------------
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>reverse_1988
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-------------------------------------------------------------------TGCTGGAGGTCGA
AGAAGC--------------------------------------------------------------------------
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--
